Wall clock time and date at job start Tue Mar 31 2020 11:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46947 * 110.99613 * 169.99842 * 13 12 10 15 15 C 1.53426 * 109.88148 * 52.91773 * 14 13 12 16 16 N 1.46527 * 108.13802 * 50.05533 * 15 14 13 17 17 C 1.37410 * 123.35432 * 343.55282 * 16 15 14 18 18 C 1.33661 * 107.05968 * 179.78616 * 17 16 15 19 19 N 1.34500 * 107.79069 * 0.08480 * 18 17 16 20 20 C 1.30872 * 109.33638 * 359.97438 * 19 18 17 21 21 C 1.50702 * 125.73832 * 179.97438 * 20 19 18 22 22 F 1.39892 * 109.47584 * 14.98068 * 21 20 19 23 23 F 1.39907 * 109.46765 * 134.97477 * 21 20 19 24 24 F 1.39894 * 109.47257 * 254.97007 * 21 20 19 25 25 C 1.47426 * 111.00145 * 294.28303 * 13 12 10 26 26 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.09003 * 109.39787 * 173.04544 * 14 13 12 31 31 H 1.09001 * 109.40471 * 292.78576 * 14 13 12 32 32 H 1.09000 * 109.72752 * 169.71494 * 15 14 13 33 33 H 1.08999 * 109.73207 * 290.34549 * 15 14 13 34 34 H 1.07998 * 126.10351 * 180.08740 * 18 17 16 35 35 H 1.08994 * 109.77235 * 45.53533 * 25 13 12 36 36 H 1.09003 * 109.76747 * 166.31958 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 7.5001 -3.8011 -0.2345 15 6 8.2211 -2.8827 0.7608 16 7 7.7362 -3.1989 2.1069 17 6 6.5866 -3.9121 2.3477 18 6 6.4585 -4.0133 3.6743 19 7 7.5012 -3.3772 4.2375 20 6 8.2689 -2.8872 3.2977 21 6 9.5381 -2.1047 3.5167 22 9 9.9618 -2.2642 4.8404 23 9 10.5308 -2.5742 2.6498 24 9 9.3003 -0.7497 3.2631 25 6 5.6922 -4.4419 1.2569 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3630 0.0007 28 1 5.9249 -1.8559 -0.8873 29 1 5.9236 -1.8566 0.8927 30 1 7.8556 -4.8236 -0.1068 31 1 7.7114 -3.4700 -1.2513 32 1 9.2962 -3.0540 0.7073 33 1 8.0024 -1.8411 0.5254 34 1 5.6603 -4.5161 4.2000 35 1 4.6501 -4.2391 1.5035 36 1 5.8431 -5.5157 1.1454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932586055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:23 Heat of formation + Delta-G solvation = -117.293783 kcal Electronic energy + Delta-G solvation = -27476.563107 eV Core-core repulsion = 22967.901057 eV Total energy + Delta-G solvation = -4508.662049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.44374 -48.97779 -48.92396 -43.87992 -40.60736 -38.71307 -36.03072 -34.83004 -33.77473 -32.60900 -30.76376 -29.73329 -27.41422 -26.27688 -25.65607 -23.47883 -22.71040 -21.55160 -20.89468 -20.01796 -19.86163 -19.42449 -19.29231 -18.11618 -17.36365 -17.17589 -16.76171 -16.48073 -16.14198 -15.78849 -15.72806 -15.56167 -15.35956 -15.30394 -15.12830 -15.05935 -15.01952 -14.94369 -14.45442 -14.26663 -13.98369 -13.77579 -13.68027 -13.10307 -13.00583 -12.67579 -12.45231 -12.39397 -12.01123 -11.53680 -11.49786 -10.89816 -10.45345 -10.24935 -9.83323 -9.57442 -8.41802 -6.02065 0.37560 0.83233 1.28011 1.32609 1.41300 1.48613 1.58075 1.92294 2.20751 2.23731 2.48792 2.79408 3.05051 3.07052 3.14911 3.29983 3.47773 3.74871 3.81512 4.00103 4.11414 4.19596 4.31646 4.36901 4.43918 4.57213 4.63893 4.80477 4.97009 5.34105 5.49766 5.61152 5.68750 5.86955 5.97520 6.46261 6.57466 6.87403 7.38217 7.93224 8.75525 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.004007 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.946371 B = 6985.896796 C = 7636.409115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.958 3.042 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.238 1.238 7 C -0.324 4.324 8 H 0.061 0.939 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.598 6.598 12 C 0.051 3.949 13 N -0.521 5.521 14 C 0.049 3.951 15 C 0.042 3.958 16 N -0.422 5.422 17 C -0.012 4.012 18 C -0.024 4.024 19 N -0.465 5.465 20 C 0.093 3.907 21 C 0.575 3.425 22 F -0.157 7.157 23 F -0.160 7.160 24 F -0.166 7.166 25 C 0.129 3.871 26 H 0.279 0.721 27 H 0.387 0.613 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.196 0.804 35 H 0.094 0.906 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.612 -2.538 1.423 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.779 3.221 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.162 1.162 7 C -0.453 4.453 8 H 0.079 0.921 9 N -0.233 5.233 10 C 0.240 3.760 11 O -0.482 6.482 12 C -0.080 4.080 13 N -0.242 5.242 14 C -0.079 4.079 15 C -0.080 4.080 16 N -0.106 5.106 17 C -0.131 4.131 18 C -0.173 4.173 19 N -0.186 5.186 20 C -0.168 4.168 21 C 0.518 3.482 22 F -0.138 7.138 23 F -0.141 7.141 24 F -0.147 7.147 25 C 0.000 4.000 26 H 0.088 0.912 27 H 0.222 0.778 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.213 0.787 35 H 0.112 0.888 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 24.071 -3.223 1.703 24.346 hybrid contribution 0.002 1.447 0.217 1.464 sum 24.073 -1.776 1.920 24.215 Atomic orbital electron populations 1.69788 1.08014 1.29153 1.50346 1.26018 0.96367 1.02427 0.96245 0.85459 0.79306 0.77357 0.80004 1.17781 1.20247 1.16177 1.18997 0.81297 0.94988 1.50052 0.92106 1.42055 1.05943 1.07556 1.67796 1.20677 0.90446 0.83452 0.81396 1.90533 1.71008 1.32172 1.54505 1.21886 0.91121 0.91124 1.03861 1.61879 1.13862 1.14361 1.34115 1.22851 0.83824 1.01137 1.00076 1.23444 1.03198 1.03527 0.77812 1.45191 1.18606 1.39415 1.07391 1.22606 0.90772 1.01221 0.98489 1.22329 0.99259 1.04761 0.90987 1.70359 1.04646 1.12108 1.31450 1.22423 1.00601 1.10360 0.83404 1.16360 0.80448 0.76581 0.74792 1.93248 1.90305 1.95298 1.34956 1.93236 1.63013 1.88293 1.69567 1.93273 1.94365 1.33220 1.93873 1.21200 0.97128 0.99712 0.82003 0.91185 0.77823 0.84928 0.92403 0.87777 0.84469 0.85259 0.87399 0.78664 0.88812 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.96 21.66 0.30 -55.02 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 3 Si 0.96 38.29 27.74 68.60 1.90 40.19 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.24 -8.17 6.52 99.48 0.65 -7.52 16 7 C -0.32 -18.37 10.16 84.04 0.85 -17.51 16 8 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 9 N -0.59 -26.71 5.09 -306.98 -1.56 -28.27 16 10 C 0.45 18.87 7.37 87.66 0.65 19.52 16 11 O -0.60 -30.21 14.01 -3.07 -0.04 -30.26 16 12 C 0.05 1.38 4.50 85.56 0.38 1.76 16 13 N -0.52 -12.45 4.70 -902.95 -4.25 -16.70 16 14 C 0.05 0.66 5.93 86.44 0.51 1.17 16 15 C 0.04 0.57 5.92 86.52 0.51 1.08 16 16 N -0.42 -9.17 2.88 -499.91 -1.44 -10.60 16 17 C -0.01 -0.30 5.89 40.64 0.24 -0.06 16 18 C -0.02 -0.66 11.85 83.24 0.99 0.33 16 19 N -0.47 -13.68 11.08 -189.01 -2.10 -15.77 16 20 C 0.09 2.33 7.26 138.31 1.00 3.33 16 21 C 0.57 12.22 3.38 71.24 0.24 12.46 16 22 F -0.16 -3.67 17.16 44.97 0.77 -2.90 16 23 F -0.16 -2.75 15.87 44.97 0.71 -2.04 16 24 F -0.17 -3.52 17.30 44.97 0.78 -2.74 16 25 C 0.13 3.34 5.77 85.45 0.49 3.83 16 26 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 28 H 0.13 2.64 8.08 -2.39 -0.02 2.62 16 29 H 0.06 1.50 6.25 -2.39 -0.01 1.49 16 30 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 31 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 1.16 6.97 -2.39 -0.02 1.15 16 33 H 0.11 1.27 7.20 -2.39 -0.02 1.26 16 34 H 0.20 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.09 3.21 5.81 -2.39 -0.01 3.20 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -75.37 312.21 2.00 -73.38 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.57 Total: 24.99 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 6.34 Total: 25.75 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -9.04 Total: -126.37 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.04 Total: -30.26 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 2.26 Total: -7.68 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -75.37 2.00 -73.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932586055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.915 kcal (2) G-P(sol) polarization free energy of solvation -75.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds