Wall clock time and date at job start Tue Mar 31 2020 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47357 * 85.01495 * 3 2 1 5 5 H 1.48499 * 109.47206 * 205.01445 * 3 2 1 6 6 H 1.48494 * 109.47172 * 325.01392 * 3 2 1 7 7 C 1.38815 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99395 * 187.32197 * 7 2 1 9 9 N 1.36929 * 120.00214 * 7.32913 * 7 2 1 10 10 C 1.47020 * 125.64817 * 5.85300 * 9 7 2 11 11 C 1.54321 * 107.27348 * 181.02587 * 10 9 7 12 12 C 1.55157 * 102.93981 * 22.19198 * 11 10 9 13 13 H 1.09004 * 111.00165 * 82.61426 * 12 11 10 14 14 N 1.46497 * 111.00779 * 206.42160 * 12 11 10 15 15 C 1.34770 * 120.00637 * 205.00634 * 14 12 11 16 16 O 1.21576 * 119.99950 * 359.97438 * 15 14 12 17 17 C 1.47710 * 120.00343 * 180.02562 * 15 14 12 18 18 N 1.31806 * 126.51915 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.07456 * 179.97438 * 18 17 15 20 20 H 0.97003 * 124.88463 * 180.02562 * 19 18 17 21 21 C 1.35041 * 110.23228 * 0.02562 * 19 18 17 22 22 C 1.35364 * 107.22340 * 359.76171 * 21 19 18 23 23 C 1.50704 * 127.24375 * 180.24383 * 22 21 19 24 24 F 1.39897 * 109.47413 * 0.14125 * 23 22 21 25 25 F 1.39896 * 109.47187 * 120.14402 * 23 22 21 26 26 F 1.39903 * 109.46884 * 240.13964 * 23 22 21 27 27 C 1.47423 * 125.64794 * 185.55075 * 9 7 2 28 28 H 0.97003 * 119.99469 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.88680 * 300.44631 * 10 9 7 30 30 H 1.09009 * 109.88068 * 61.45571 * 10 9 7 31 31 H 1.08998 * 110.72391 * 140.56194 * 11 10 9 32 32 H 1.09001 * 110.72383 * 263.83278 * 11 10 9 33 33 H 0.97010 * 119.99532 * 25.00151 * 14 12 11 34 34 H 1.07998 * 126.38716 * 180.02562 * 21 19 18 35 35 H 1.08998 * 110.36579 * 274.74042 * 27 9 7 36 36 H 1.09002 * 110.36870 * 37.06928 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1197 9 7 1.3339 -2.3833 -0.1502 10 6 -0.1008 -2.5179 -0.4415 11 6 -0.4175 -4.0273 -0.4966 12 6 0.7389 -4.6552 0.3255 13 1 0.5283 -4.6092 1.3940 14 7 0.9953 -6.0342 -0.0973 15 6 1.5613 -6.9075 0.7591 16 8 1.8595 -6.5508 1.8824 17 6 1.8204 -8.2977 0.3326 18 7 1.5520 -8.8190 -0.8479 19 7 1.9079 -10.0530 -0.8763 20 1 1.8089 -10.6415 -1.6411 21 6 2.4398 -10.4131 0.3115 22 6 2.4085 -9.3219 1.1120 23 6 2.8953 -9.2201 2.5346 24 9 3.4112 -10.4555 2.9406 25 9 3.8970 -8.2469 2.6162 26 9 1.8295 -8.8633 3.3677 27 6 1.9252 -3.7303 -0.0535 28 1 -0.4849 0.8401 0.0004 29 1 -0.6854 -2.0452 0.3478 30 1 -0.3296 -2.0535 -1.4008 31 1 -1.3802 -4.2367 -0.0304 32 1 -0.3994 -4.3879 -1.5251 33 1 0.7577 -6.3188 -0.9937 34 1 2.8231 -11.3884 0.5726 35 1 2.3498 -4.0278 -1.0123 36 1 2.6883 -3.7547 0.7244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014678005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:54 Heat of formation + Delta-G solvation = -77.110306 kcal Electronic energy + Delta-G solvation = -26808.896894 eV Core-core repulsion = 22301.977331 eV Total energy + Delta-G solvation = -4506.919563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.03149 -47.62395 -47.41283 -43.29198 -39.43300 -37.17670 -34.08338 -32.93075 -32.17278 -31.38567 -29.13205 -27.27300 -26.27245 -24.89672 -23.82349 -21.74423 -20.59334 -20.33826 -19.87735 -19.38427 -18.37042 -18.17658 -17.42357 -17.02862 -16.73771 -16.22607 -15.82037 -14.61585 -14.51916 -14.45061 -14.34649 -14.28795 -14.05261 -13.90862 -13.75088 -13.61363 -13.58788 -12.80857 -12.57413 -12.41265 -12.20163 -11.80335 -11.49743 -11.03547 -10.82418 -10.73895 -10.39544 -10.09349 -10.06986 -9.99839 -9.98098 -9.86029 -9.67398 -8.74663 -8.58166 -6.79269 -5.66457 -3.02578 1.14132 1.21408 2.11837 2.73018 3.16793 3.26025 3.44294 3.49545 3.51763 3.61105 3.89201 4.22368 4.42887 4.48089 4.54680 4.71852 5.05643 5.29951 5.43334 5.48557 5.63814 5.78010 5.81748 6.19970 6.28323 6.35431 6.45313 6.58107 6.73453 6.96551 7.14987 7.46610 7.67637 7.68174 7.84971 8.26047 8.31356 9.24480 9.85228 10.50246 11.43145 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.003061 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.023564 B = 9146.312080 C = 9736.378389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.173 3.827 11 C -0.148 4.148 12 C 0.126 3.874 13 H 0.102 0.898 14 N -0.697 5.697 15 C 0.590 3.410 16 O -0.512 6.512 17 C 0.048 3.952 18 N -0.248 5.248 19 N -0.375 5.375 20 H 0.455 0.545 21 C 0.057 3.943 22 C -0.258 4.258 23 C 0.551 3.449 24 F -0.185 7.185 25 F -0.164 7.164 26 F -0.165 7.165 27 C 0.129 3.871 28 H 0.252 0.748 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.201 0.799 35 H 0.021 0.979 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -26.242 -2.254 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.022 3.978 13 H 0.120 0.880 14 N -0.347 5.347 15 C 0.371 3.629 16 O -0.385 6.385 17 C -0.115 4.115 18 N -0.082 5.082 19 N -0.087 5.087 20 H 0.301 0.699 21 C -0.090 4.090 22 C -0.271 4.271 23 C 0.495 3.505 24 F -0.167 7.167 25 F -0.145 7.145 26 F -0.146 7.146 27 C 0.001 3.999 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.218 0.782 35 H 0.039 0.961 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.989 -25.414 -2.428 25.607 hybrid contribution 0.690 0.069 -0.016 0.694 sum 2.679 -25.345 -2.443 25.603 Atomic orbital electron populations 1.69943 1.04919 1.25004 1.56969 1.24809 0.95687 0.97712 1.02251 0.86091 0.78659 0.83462 0.77517 1.21589 1.20651 1.21682 1.19074 0.90981 0.82483 1.42980 0.90386 1.44388 1.05174 0.99787 1.83528 1.21233 0.85667 0.87765 1.00587 1.23158 0.97022 0.99782 0.98682 1.22487 0.97091 0.77960 1.00299 0.88019 1.45834 1.61222 1.11377 1.16294 1.16816 0.78721 0.82025 0.85291 1.90897 1.51040 1.77313 1.19243 1.22014 1.03034 0.96200 0.90275 1.73707 1.19194 0.94051 1.21228 1.43339 1.43617 1.08553 1.13176 0.69870 1.22705 0.99923 1.00507 0.85885 1.20332 1.14309 0.95990 0.96451 1.16940 0.75634 0.73415 0.84520 1.93153 1.87630 1.43876 1.92006 1.93259 1.61435 1.63164 1.96625 1.93248 1.56041 1.91697 1.73640 1.21889 0.94143 0.86034 0.97819 0.93781 0.91513 0.94963 0.91422 0.92063 0.76166 0.78231 0.96144 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.45 55.49 0.58 -26.66 16 2 C -0.01 -0.24 5.45 -17.43 -0.09 -0.34 16 3 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.60 -15.77 3.39 -169.94 -0.58 -16.35 16 10 C 0.17 4.17 5.45 -3.07 -0.02 4.15 16 11 C -0.15 -2.68 6.60 -24.90 -0.16 -2.85 16 12 C 0.13 2.35 3.44 -65.66 -0.23 2.13 16 13 H 0.10 2.08 7.54 -51.93 -0.39 1.69 16 14 N -0.70 -10.69 5.19 -52.60 -0.27 -10.96 16 15 C 0.59 9.54 7.82 -12.39 -0.10 9.45 16 16 O -0.51 -10.00 14.12 5.30 0.07 -9.92 16 17 C 0.05 0.62 7.13 -82.77 -0.59 0.03 16 18 N -0.25 -2.47 11.92 33.42 0.40 -2.07 16 19 N -0.37 -2.12 6.83 30.47 0.21 -1.91 16 20 H 0.46 0.52 8.96 -190.44 -1.71 -1.18 16 21 C 0.06 0.36 11.49 -17.16 -0.20 0.16 16 22 C -0.26 -2.88 5.66 -104.40 -0.59 -3.47 16 23 C 0.55 7.03 2.85 36.01 0.10 7.14 16 24 F -0.19 -1.92 16.87 2.25 0.04 -1.89 16 25 F -0.16 -2.48 16.42 2.25 0.04 -2.44 16 26 F -0.17 -2.44 16.41 2.25 0.04 -2.40 16 27 C 0.13 2.82 6.93 -2.41 -0.02 2.81 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.07 1.80 6.88 -51.93 -0.36 1.44 16 30 H 0.03 0.84 7.97 -51.92 -0.41 0.42 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 33 H 0.40 5.22 8.29 -40.82 -0.34 4.88 16 34 H 0.20 0.39 8.02 -52.49 -0.42 -0.03 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -35.26 321.82 -6.56 -41.82 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.86 Total: -2.07 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -2.05 Total: 12.56 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.34 Total: -57.95 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.26 -6.56 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014678005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.293 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds