Wall clock time and date at job start Tue Mar 31 2020 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47357 * 85.01495 * 3 2 1 5 5 H 1.48499 * 109.47206 * 205.01445 * 3 2 1 6 6 H 1.48494 * 109.47172 * 325.01392 * 3 2 1 7 7 C 1.38815 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99395 * 187.32197 * 7 2 1 9 9 N 1.36929 * 120.00214 * 7.32913 * 7 2 1 10 10 C 1.47020 * 125.64817 * 5.85300 * 9 7 2 11 11 C 1.54321 * 107.27348 * 181.02587 * 10 9 7 12 12 C 1.55157 * 102.93981 * 22.19198 * 11 10 9 13 13 H 1.09004 * 111.00165 * 82.61426 * 12 11 10 14 14 N 1.46497 * 111.00779 * 206.42160 * 12 11 10 15 15 C 1.34770 * 120.00637 * 205.00634 * 14 12 11 16 16 O 1.21576 * 119.99950 * 359.97438 * 15 14 12 17 17 C 1.47710 * 120.00343 * 180.02562 * 15 14 12 18 18 N 1.31806 * 126.51915 * 0.02562 * 17 15 14 19 19 N 1.28467 * 110.07456 * 179.97438 * 18 17 15 20 20 H 0.97003 * 124.88463 * 180.02562 * 19 18 17 21 21 C 1.35041 * 110.23228 * 0.02562 * 19 18 17 22 22 C 1.35364 * 107.22340 * 359.76171 * 21 19 18 23 23 C 1.50704 * 127.24375 * 180.24383 * 22 21 19 24 24 F 1.39897 * 109.47413 * 0.14125 * 23 22 21 25 25 F 1.39896 * 109.47187 * 120.14402 * 23 22 21 26 26 F 1.39903 * 109.46884 * 240.13964 * 23 22 21 27 27 C 1.47423 * 125.64794 * 185.55075 * 9 7 2 28 28 H 0.97003 * 119.99469 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.88680 * 300.44631 * 10 9 7 30 30 H 1.09009 * 109.88068 * 61.45571 * 10 9 7 31 31 H 1.08998 * 110.72391 * 140.56194 * 11 10 9 32 32 H 1.09001 * 110.72383 * 263.83278 * 11 10 9 33 33 H 0.97010 * 119.99532 * 25.00151 * 14 12 11 34 34 H 1.07998 * 126.38716 * 180.02562 * 21 19 18 35 35 H 1.08998 * 110.36579 * 274.74042 * 27 9 7 36 36 H 1.09002 * 110.36870 * 37.06928 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1197 9 7 1.3339 -2.3833 -0.1502 10 6 -0.1008 -2.5179 -0.4415 11 6 -0.4175 -4.0273 -0.4966 12 6 0.7389 -4.6552 0.3255 13 1 0.5283 -4.6092 1.3940 14 7 0.9953 -6.0342 -0.0973 15 6 1.5613 -6.9075 0.7591 16 8 1.8595 -6.5508 1.8824 17 6 1.8204 -8.2977 0.3326 18 7 1.5520 -8.8190 -0.8479 19 7 1.9079 -10.0530 -0.8763 20 1 1.8089 -10.6415 -1.6411 21 6 2.4398 -10.4131 0.3115 22 6 2.4085 -9.3219 1.1120 23 6 2.8953 -9.2201 2.5346 24 9 3.4112 -10.4555 2.9406 25 9 3.8970 -8.2469 2.6162 26 9 1.8295 -8.8633 3.3677 27 6 1.9252 -3.7303 -0.0535 28 1 -0.4849 0.8401 0.0004 29 1 -0.6854 -2.0452 0.3478 30 1 -0.3296 -2.0535 -1.4008 31 1 -1.3802 -4.2367 -0.0304 32 1 -0.3994 -4.3879 -1.5251 33 1 0.7577 -6.3188 -0.9937 34 1 2.8231 -11.3884 0.5726 35 1 2.3498 -4.0278 -1.0123 36 1 2.6883 -3.7547 0.7244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014678005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:54 Heat of formation + Delta-G solvation = -103.880962 kcal Electronic energy + Delta-G solvation = -26810.057757 eV Core-core repulsion = 22301.977331 eV Total energy + Delta-G solvation = -4508.080426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.00560 -48.56047 -48.47832 -43.99268 -40.78832 -38.87075 -35.69734 -33.96166 -33.59346 -32.42531 -30.97149 -28.95825 -27.19488 -26.61485 -25.12833 -22.58827 -22.16254 -21.84084 -21.34345 -20.16865 -19.37220 -19.10982 -19.00305 -18.27909 -17.76762 -17.33778 -16.98553 -16.68600 -16.00663 -15.58027 -15.51128 -15.39126 -15.34984 -14.92202 -14.87583 -14.67108 -14.64810 -14.33464 -14.16027 -13.93402 -13.75528 -13.46358 -12.95386 -12.75410 -12.43929 -12.27394 -12.12789 -12.02983 -11.82580 -11.62169 -11.34460 -10.84225 -10.73594 -10.68213 -10.15284 -8.90952 -7.84293 -5.23627 0.21599 0.60201 1.46236 1.48157 1.49861 1.57698 1.80732 2.09044 2.13683 2.50663 2.73879 3.03935 3.31517 3.38508 3.49873 3.66679 3.75671 3.85883 4.00329 4.03253 4.19938 4.38360 4.56954 4.63083 4.71858 4.87014 4.96773 5.04122 5.39360 5.47059 5.59288 5.76958 5.86088 6.20292 6.34295 6.60303 7.06480 7.09330 7.74297 8.38119 9.23331 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.003061 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.023564 B = 9146.312080 C = 9736.378389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.177 3.823 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.080 0.920 14 N -0.685 5.685 15 C 0.587 3.413 16 O -0.555 6.555 17 C 0.018 3.982 18 N -0.245 5.245 19 N -0.347 5.347 20 H 0.478 0.522 21 C 0.099 3.901 22 C -0.290 4.290 23 C 0.546 3.454 24 F -0.170 7.170 25 F -0.185 7.185 26 F -0.183 7.183 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.031 0.969 30 H 0.007 0.993 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.418 0.582 34 H 0.251 0.749 35 H 0.034 0.966 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -29.189 -3.895 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.052 3.948 11 C -0.164 4.164 12 C 0.039 3.961 13 H 0.098 0.902 14 N -0.337 5.337 15 C 0.371 3.629 16 O -0.431 6.431 17 C -0.144 4.144 18 N -0.081 5.081 19 N -0.063 5.063 20 H 0.330 0.670 21 C -0.049 4.049 22 C -0.303 4.303 23 C 0.491 3.509 24 F -0.152 7.152 25 F -0.166 7.166 26 F -0.165 7.165 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.025 0.975 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.256 0.744 34 H 0.267 0.733 35 H 0.052 0.948 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.382 -28.424 -4.125 28.821 hybrid contribution 0.616 0.842 0.477 1.148 sum 2.998 -27.582 -3.647 27.983 Atomic orbital electron populations 1.70156 1.06200 1.25435 1.57643 1.25656 0.96651 1.00953 1.02227 0.85053 0.77787 0.79061 0.77356 1.21388 1.19490 1.21518 1.19422 0.91381 0.83969 1.43031 0.90517 1.44670 1.06172 1.00676 1.83560 1.21039 0.84393 0.91572 0.97796 1.22976 0.97651 0.95124 1.00688 1.21961 0.95557 0.79352 0.99233 0.90167 1.45561 1.61284 1.09796 1.17027 1.17281 0.77531 0.83441 0.84617 1.90871 1.52602 1.78517 1.21062 1.21448 1.06021 0.94913 0.92042 1.73623 1.18906 0.95793 1.19762 1.43468 1.41442 1.07421 1.13946 0.67011 1.23324 0.96627 1.00679 0.84281 1.20342 1.16487 0.97450 0.95995 1.17173 0.74886 0.73353 0.85482 1.93170 1.87388 1.42579 1.92028 1.93210 1.62318 1.64295 1.96801 1.93205 1.56852 1.91969 1.74458 1.21978 0.94959 0.85219 0.97698 0.94185 0.95064 0.97464 0.89132 0.89000 0.74387 0.73287 0.94832 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 10.45 21.65 0.23 -57.42 16 2 C -0.06 -3.59 5.45 84.86 0.46 -3.13 16 3 Si 0.98 46.99 29.56 68.60 2.03 49.02 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 7 C -0.25 -14.65 10.26 84.04 0.86 -13.79 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 9 N -0.62 -33.64 3.39 -691.56 -2.35 -35.98 16 10 C 0.18 8.79 5.45 86.73 0.47 9.26 16 11 C -0.13 -4.46 6.60 31.78 0.21 -4.25 16 12 C 0.15 5.42 3.44 46.46 0.16 5.58 16 13 H 0.08 3.39 7.54 -2.38 -0.02 3.37 16 14 N -0.69 -20.43 5.19 -438.59 -2.28 -22.71 16 15 C 0.59 18.95 7.82 86.75 0.68 19.63 16 16 O -0.55 -22.43 14.12 -3.96 -0.06 -22.49 16 17 C 0.02 0.43 7.13 42.46 0.30 0.73 16 18 N -0.25 -4.11 11.92 -48.18 -0.57 -4.68 16 19 N -0.35 -2.32 6.83 -57.51 -0.39 -2.71 16 20 H 0.48 -1.49 8.96 -219.99 -1.97 -3.46 16 21 C 0.10 0.77 11.49 83.54 0.96 1.73 16 22 C -0.29 -5.85 5.66 -19.72 -0.11 -5.96 16 23 C 0.55 13.62 2.85 71.24 0.20 13.83 16 24 F -0.17 -3.22 16.87 44.97 0.76 -2.46 16 25 F -0.18 -5.73 16.42 44.97 0.74 -4.99 16 26 F -0.18 -5.52 16.41 44.97 0.74 -4.78 16 27 C 0.13 5.74 6.93 86.93 0.60 6.34 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.03 1.76 6.88 -2.39 -0.02 1.74 16 30 H 0.01 0.39 7.97 -2.38 -0.02 0.37 16 31 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.09 2.73 8.00 -2.39 -0.02 2.71 16 33 H 0.42 9.93 8.29 -92.70 -0.77 9.16 16 34 H 0.25 -0.67 8.02 -2.91 -0.02 -0.69 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -81.94 321.82 2.08 -79.86 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -1.57 Total: -0.64 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: 4.80 Total: 29.98 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.36 Total: -123.50 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 2.23 Total: -12.23 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -81.94 2.08 -79.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014678005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.021 kcal (2) G-P(sol) polarization free energy of solvation -81.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds