Wall clock time and date at job start Tue Mar 31 2020 12:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48499 * 109.47413 * 240.00400 * 3 2 1 5 5 H 1.48502 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47257 * 120.00372 * 3 2 1 7 7 C 1.38816 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64791 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27098 * 178.95874 * 10 9 7 12 12 C 1.55158 * 102.94273 * 337.80590 * 11 10 9 13 13 H 1.08998 * 111.00321 * 277.39055 * 12 11 10 14 14 N 1.46502 * 111.00293 * 153.57401 * 12 11 10 15 15 C 1.34778 * 119.99778 * 154.99871 * 14 12 11 16 16 O 1.21567 * 120.00014 * 0.02562 * 15 14 12 17 17 C 1.47709 * 120.00082 * 180.02562 * 15 14 12 18 18 N 1.31808 * 126.51426 * 0.02562 * 17 15 14 19 19 N 1.28473 * 110.06906 * 179.72024 * 18 17 15 20 20 H 0.96998 * 124.88393 * 180.29532 * 19 18 17 21 21 C 1.35032 * 110.23186 * 0.46182 * 19 18 17 22 22 C 1.35367 * 107.22544 * 359.54546 * 21 19 18 23 23 C 1.50700 * 127.24691 * 180.23980 * 22 21 19 24 24 F 1.39904 * 109.47032 * 0.02760 * 23 22 21 25 25 F 1.39895 * 109.47403 * 120.03112 * 23 22 21 26 26 F 1.39902 * 109.47140 * 240.03305 * 23 22 21 27 27 C 1.47420 * 125.64911 * 180.02562 * 9 7 2 28 28 H 0.97000 * 120.00164 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.88454 * 59.54154 * 10 9 7 30 30 H 1.09005 * 109.88438 * 298.37440 * 10 9 7 31 31 H 1.08996 * 110.72288 * 219.43813 * 11 10 9 32 32 H 1.09000 * 110.86885 * 96.24023 * 11 10 9 33 33 H 0.96993 * 120.00192 * 335.00272 * 14 12 11 34 34 H 1.08002 * 126.38962 * 179.81581 * 21 19 18 35 35 H 1.08996 * 110.37290 * 85.26908 * 27 9 7 36 36 H 1.09003 * 110.36564 * 322.94591 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0267 12 6 0.8515 -4.6559 -0.6127 13 1 0.8553 -4.5962 -1.7010 14 7 1.0291 -6.0394 -0.1648 15 6 1.7587 -6.8986 -0.9037 16 8 2.2698 -6.5253 -1.9416 17 6 1.9373 -8.2937 -0.4525 18 7 1.4434 -8.8325 0.6443 19 7 1.7896 -10.0672 0.7235 20 1 1.5400 -10.6683 1.4426 21 6 2.5540 -10.4067 -0.3366 22 6 2.6709 -9.3057 -1.1155 23 6 3.4244 -9.1835 -2.4149 24 9 4.0154 -10.4122 -2.7286 25 9 2.5393 -8.8178 -3.4347 26 9 4.4182 -8.2071 -2.2876 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0518 -0.8824 30 1 -0.5537 -2.0849 0.9030 31 1 -1.2990 -4.2513 -0.6760 32 1 -0.6325 -4.4209 0.9794 33 1 0.6215 -6.3372 0.6635 34 1 2.9873 -11.3769 -0.5296 35 1 2.1667 -4.0421 1.0178 36 1 2.8329 -3.7404 -0.6163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014678006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:00 Heat of formation + Delta-G solvation = -76.752522 kcal Electronic energy + Delta-G solvation = -26805.372504 eV Core-core repulsion = 22298.468456 eV Total energy + Delta-G solvation = -4506.904048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03506 -47.62710 -47.41742 -43.29396 -39.44065 -37.18191 -34.08642 -32.93352 -32.17350 -31.38357 -29.12701 -27.27440 -26.27503 -24.89693 -23.82675 -21.74671 -20.59448 -20.33858 -19.86850 -19.38563 -18.37447 -18.17999 -17.42609 -17.03068 -16.73803 -16.22740 -15.83105 -14.61765 -14.52066 -14.45311 -14.35037 -14.28044 -14.06515 -13.91311 -13.74630 -13.61811 -13.58978 -12.81867 -12.57802 -12.38807 -12.19653 -11.77252 -11.49879 -11.00034 -10.88750 -10.71445 -10.41639 -10.11501 -10.07421 -10.00015 -9.95535 -9.86677 -9.66434 -8.75381 -8.55597 -6.80333 -5.67524 -3.00977 1.13985 1.21168 2.11710 2.72728 3.16553 3.25561 3.45536 3.49270 3.50825 3.60810 3.88883 4.22187 4.42652 4.47747 4.54886 4.71667 5.05391 5.29919 5.43572 5.48821 5.64457 5.77689 5.82552 6.20246 6.28231 6.34832 6.45503 6.58564 6.73020 6.96476 7.14838 7.56848 7.61291 7.67935 7.85039 8.25278 8.30520 9.25675 9.85524 10.50454 11.44363 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.003061 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.495185 B = 9145.751503 C = 9768.001969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.101 0.899 14 N -0.697 5.697 15 C 0.590 3.410 16 O -0.512 6.512 17 C 0.048 3.952 18 N -0.247 5.247 19 N -0.375 5.375 20 H 0.455 0.545 21 C 0.057 3.943 22 C -0.259 4.259 23 C 0.551 3.449 24 F -0.185 7.185 25 F -0.165 7.165 26 F -0.164 7.164 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.201 0.799 35 H 0.020 0.980 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -26.283 1.537 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.119 0.881 14 N -0.347 5.347 15 C 0.372 3.628 16 O -0.385 6.385 17 C -0.115 4.115 18 N -0.082 5.082 19 N -0.087 5.087 20 H 0.301 0.699 21 C -0.090 4.090 22 C -0.271 4.271 23 C 0.495 3.505 24 F -0.167 7.167 25 F -0.146 7.146 26 F -0.145 7.145 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.218 0.782 35 H 0.038 0.962 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.673 -25.452 1.671 25.562 hybrid contribution 0.708 0.068 0.050 0.713 sum 2.381 -25.384 1.721 25.553 Atomic orbital electron populations 1.69935 1.04868 1.25158 1.57207 1.24795 0.95744 0.97650 1.02233 0.86171 0.78430 0.83068 0.77937 1.21095 1.21616 1.21209 1.19040 0.90505 0.82265 1.43718 0.90392 1.44380 1.01630 0.99764 1.87272 1.21150 0.84519 0.87358 1.01512 1.23193 0.95781 0.99992 0.99827 1.22433 0.97173 0.77929 1.00323 0.88089 1.45827 1.51711 1.11410 1.25757 1.16815 0.79759 0.82084 0.84175 1.90892 1.47782 1.76720 1.23133 1.22009 1.00495 0.96198 0.92831 1.73713 1.20920 0.93690 1.19839 1.43339 1.36713 1.08532 1.20090 0.69866 1.22704 0.97146 1.00517 0.88645 1.20328 1.10722 0.96029 1.00014 1.16939 0.77167 0.73458 0.82939 1.93155 1.85099 1.44419 1.93992 1.93245 1.68309 1.91486 1.61585 1.93260 1.62336 1.62974 1.95921 1.21831 0.94822 0.86108 0.97073 0.93707 0.93153 0.93555 0.91498 0.91963 0.76137 0.78229 0.96195 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.31 55.49 0.57 -26.74 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.82 3.39 -170.05 -0.58 -16.40 16 10 C 0.18 4.35 5.37 -3.06 -0.02 4.33 16 11 C -0.15 -2.71 6.60 -24.90 -0.16 -2.88 16 12 C 0.13 2.34 3.42 -65.76 -0.23 2.11 16 13 H 0.10 2.04 7.54 -51.93 -0.39 1.65 16 14 N -0.70 -10.68 5.19 -52.70 -0.27 -10.95 16 15 C 0.59 9.52 7.82 -12.39 -0.10 9.43 16 16 O -0.51 -9.96 14.12 5.31 0.07 -9.89 16 17 C 0.05 0.62 7.13 -82.77 -0.59 0.03 16 18 N -0.25 -2.47 11.92 33.42 0.40 -2.07 16 19 N -0.37 -2.12 6.83 30.47 0.21 -1.91 16 20 H 0.46 0.53 8.96 -190.44 -1.71 -1.18 16 21 C 0.06 0.36 11.48 -17.17 -0.20 0.16 16 22 C -0.26 -2.87 5.66 -104.41 -0.59 -3.46 16 23 C 0.55 7.01 2.85 36.01 0.10 7.11 16 24 F -0.19 -1.92 16.87 2.25 0.04 -1.88 16 25 F -0.17 -2.43 16.41 2.25 0.04 -2.39 16 26 F -0.16 -2.47 16.42 2.25 0.04 -2.44 16 27 C 0.13 2.84 6.93 -2.52 -0.02 2.82 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 30 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.01 8.00 -51.93 -0.42 0.60 16 33 H 0.40 5.23 8.29 -40.82 -0.34 4.89 16 34 H 0.20 0.39 8.02 -52.49 -0.42 -0.04 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -35.22 321.65 -6.57 -41.79 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.86 Total: -2.12 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -2.05 Total: 12.67 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.33 Total: -58.07 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.22 -6.57 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014678006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.959 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds