Wall clock time and date at job start Tue Mar 31 2020 12:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48499 * 109.47413 * 240.00400 * 3 2 1 5 5 H 1.48502 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47257 * 120.00372 * 3 2 1 7 7 C 1.38816 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00313 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64791 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27098 * 178.95874 * 10 9 7 12 12 C 1.55158 * 102.94273 * 337.80590 * 11 10 9 13 13 H 1.08998 * 111.00321 * 277.39055 * 12 11 10 14 14 N 1.46502 * 111.00293 * 153.57401 * 12 11 10 15 15 C 1.34778 * 119.99778 * 154.99871 * 14 12 11 16 16 O 1.21567 * 120.00014 * 0.02562 * 15 14 12 17 17 C 1.47709 * 120.00082 * 180.02562 * 15 14 12 18 18 N 1.31808 * 126.51426 * 0.02562 * 17 15 14 19 19 N 1.28473 * 110.06906 * 179.72024 * 18 17 15 20 20 H 0.96998 * 124.88393 * 180.29532 * 19 18 17 21 21 C 1.35032 * 110.23186 * 0.46182 * 19 18 17 22 22 C 1.35367 * 107.22544 * 359.54546 * 21 19 18 23 23 C 1.50700 * 127.24691 * 180.23980 * 22 21 19 24 24 F 1.39904 * 109.47032 * 0.02760 * 23 22 21 25 25 F 1.39895 * 109.47403 * 120.03112 * 23 22 21 26 26 F 1.39902 * 109.47140 * 240.03305 * 23 22 21 27 27 C 1.47420 * 125.64911 * 180.02562 * 9 7 2 28 28 H 0.97000 * 120.00164 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.88454 * 59.54154 * 10 9 7 30 30 H 1.09005 * 109.88438 * 298.37440 * 10 9 7 31 31 H 1.08996 * 110.72288 * 219.43813 * 11 10 9 32 32 H 1.09000 * 110.86885 * 96.24023 * 11 10 9 33 33 H 0.96993 * 120.00192 * 335.00272 * 14 12 11 34 34 H 1.08002 * 126.38962 * 179.81581 * 21 19 18 35 35 H 1.08996 * 110.37290 * 85.26908 * 27 9 7 36 36 H 1.09003 * 110.36564 * 322.94591 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0267 12 6 0.8515 -4.6559 -0.6127 13 1 0.8553 -4.5962 -1.7010 14 7 1.0291 -6.0394 -0.1648 15 6 1.7587 -6.8986 -0.9037 16 8 2.2698 -6.5253 -1.9416 17 6 1.9373 -8.2937 -0.4525 18 7 1.4434 -8.8325 0.6443 19 7 1.7896 -10.0672 0.7235 20 1 1.5400 -10.6683 1.4426 21 6 2.5540 -10.4067 -0.3366 22 6 2.6709 -9.3057 -1.1155 23 6 3.4244 -9.1835 -2.4149 24 9 4.0154 -10.4122 -2.7286 25 9 2.5393 -8.8178 -3.4347 26 9 4.4182 -8.2071 -2.2876 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0518 -0.8824 30 1 -0.5537 -2.0849 0.9030 31 1 -1.2990 -4.2513 -0.6760 32 1 -0.6325 -4.4209 0.9794 33 1 0.6215 -6.3372 0.6635 34 1 2.9873 -11.3769 -0.5296 35 1 2.1667 -4.0421 1.0178 36 1 2.8329 -3.7404 -0.6163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014678006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:58 Heat of formation + Delta-G solvation = -103.466692 kcal Electronic energy + Delta-G solvation = -26806.530918 eV Core-core repulsion = 22298.468456 eV Total energy + Delta-G solvation = -4508.062462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -51.00488 -48.55924 -48.47809 -43.99312 -40.79297 -38.87519 -35.69916 -33.96073 -33.59262 -32.42373 -30.96917 -28.96040 -27.19423 -26.61559 -25.13049 -22.58788 -22.16101 -21.83684 -21.33965 -20.16842 -19.37180 -19.10945 -19.00368 -18.28005 -17.76775 -17.35651 -16.98527 -16.65918 -16.02335 -15.57417 -15.51068 -15.39061 -15.34930 -14.92186 -14.87751 -14.67053 -14.64789 -14.32011 -14.15833 -13.94621 -13.70205 -13.46356 -12.96366 -12.74407 -12.44812 -12.27231 -12.14846 -12.07297 -11.81258 -11.59069 -11.35469 -10.84275 -10.70890 -10.68227 -10.15461 -8.92101 -7.85856 -5.22211 0.21573 0.60226 1.46048 1.49620 1.50230 1.56160 1.80744 2.08992 2.13620 2.50807 2.73900 3.03920 3.32433 3.38468 3.49959 3.66790 3.75798 3.86087 4.00428 4.03737 4.19615 4.38343 4.57699 4.63149 4.70893 4.87006 4.96547 5.04370 5.41657 5.45800 5.64063 5.73620 5.86111 6.18538 6.34185 6.60217 7.06400 7.09913 7.74514 8.38108 9.24056 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.003061 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.495185 B = 9145.751503 C = 9768.001969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.625 5.625 10 C 0.185 3.815 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.082 0.918 14 N -0.685 5.685 15 C 0.587 3.413 16 O -0.554 6.554 17 C 0.018 3.982 18 N -0.246 5.246 19 N -0.347 5.347 20 H 0.478 0.522 21 C 0.099 3.901 22 C -0.290 4.290 23 C 0.547 3.453 24 F -0.170 7.170 25 F -0.183 7.183 26 F -0.185 7.185 27 C 0.129 3.871 28 H 0.249 0.751 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.418 0.582 34 H 0.251 0.749 35 H 0.031 0.969 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -29.238 2.987 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.060 3.940 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.100 0.900 14 N -0.337 5.337 15 C 0.372 3.628 16 O -0.430 6.430 17 C -0.144 4.144 18 N -0.081 5.081 19 N -0.063 5.063 20 H 0.330 0.670 21 C -0.049 4.049 22 C -0.303 4.303 23 C 0.491 3.509 24 F -0.152 7.152 25 F -0.165 7.165 26 F -0.166 7.166 27 C 0.002 3.998 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.256 0.744 34 H 0.267 0.733 35 H 0.049 0.951 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.774 -28.472 3.173 28.703 hybrid contribution 0.718 0.846 -0.370 1.170 sum 2.492 -27.626 2.803 27.880 Atomic orbital electron populations 1.70148 1.06134 1.25539 1.57824 1.25641 0.96715 1.00896 1.02181 0.85132 0.77201 0.78674 0.78186 1.20575 1.21572 1.20181 1.19401 0.90939 0.83753 1.43801 0.90472 1.44663 1.02709 1.00652 1.87218 1.20942 0.83391 0.91183 0.98490 1.23005 0.96146 0.95317 1.02136 1.21916 0.95912 0.79283 0.98974 0.90035 1.45561 1.51937 1.09844 1.26342 1.17276 0.78613 0.83498 0.83454 1.90866 1.49269 1.77928 1.24949 1.21450 1.03280 0.94908 0.94794 1.73630 1.20561 0.95415 1.18510 1.43467 1.35042 1.07425 1.20346 0.67019 1.23325 0.94474 1.00647 0.86472 1.20340 1.12186 0.97503 1.00242 1.17168 0.76805 0.73388 0.83520 1.93172 1.84869 1.43134 1.93996 1.93202 1.68856 1.91763 1.62641 1.93212 1.63269 1.64108 1.96034 1.21921 0.95158 0.85290 0.97437 0.94170 0.96642 0.96320 0.89109 0.89054 0.74403 0.73288 0.95096 0.95464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 10.31 21.65 0.22 -57.46 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 3 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.72 10.28 84.03 0.86 -13.86 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.76 3.39 -691.93 -2.35 -36.11 16 10 C 0.19 9.21 5.37 86.73 0.47 9.68 16 11 C -0.13 -4.53 6.60 31.78 0.21 -4.32 16 12 C 0.15 5.40 3.42 46.39 0.16 5.56 16 13 H 0.08 3.40 7.54 -2.39 -0.02 3.38 16 14 N -0.69 -20.42 5.19 -438.90 -2.28 -22.70 16 15 C 0.59 18.89 7.82 86.75 0.68 19.57 16 16 O -0.55 -22.27 14.12 -3.93 -0.06 -22.32 16 17 C 0.02 0.43 7.13 42.45 0.30 0.73 16 18 N -0.25 -4.12 11.92 -48.18 -0.57 -4.70 16 19 N -0.35 -2.33 6.83 -57.51 -0.39 -2.72 16 20 H 0.48 -1.46 8.96 -219.99 -1.97 -3.43 16 21 C 0.10 0.77 11.48 83.54 0.96 1.73 16 22 C -0.29 -5.83 5.66 -19.72 -0.11 -5.94 16 23 C 0.55 13.56 2.85 71.24 0.20 13.76 16 24 F -0.17 -3.20 16.87 44.97 0.76 -2.44 16 25 F -0.18 -5.48 16.41 44.97 0.74 -4.74 16 26 F -0.18 -5.70 16.42 44.97 0.74 -4.96 16 27 C 0.13 5.76 6.93 86.87 0.60 6.37 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.02 0.86 7.38 -2.39 -0.02 0.84 16 30 H 0.02 1.02 7.51 -2.38 -0.02 1.00 16 31 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.09 2.74 8.00 -2.39 -0.02 2.72 16 33 H 0.42 9.98 8.29 -92.71 -0.77 9.21 16 34 H 0.25 -0.67 8.02 -2.91 -0.02 -0.69 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -81.74 321.65 2.06 -79.67 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -1.57 Total: -0.74 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 4.80 Total: 30.18 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.37 Total: -123.70 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 9 Polarization: -14.38 SS G_CDS: 2.23 Total: -12.14 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -81.74 2.06 -79.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014678006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.793 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds