Wall clock time and date at job start Tue Mar 31 2020 12:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00150 * 2 1 4 4 H 1.48506 * 109.47232 * 95.30351 * 3 2 1 5 5 H 1.48509 * 109.47165 * 215.30139 * 3 2 1 6 6 H 1.48502 * 109.47339 * 335.30189 * 3 2 1 7 7 C 1.38815 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00012 * 28.93408 * 7 2 1 9 9 N 1.36932 * 119.99996 * 208.93131 * 7 2 1 10 10 C 1.47022 * 125.64940 * 9.83510 * 9 7 2 11 11 C 1.54326 * 107.27374 * 181.02112 * 10 9 7 12 12 C 1.55160 * 102.93972 * 22.19335 * 11 10 9 13 13 H 1.08994 * 111.00666 * 82.57107 * 12 11 10 14 14 N 1.46501 * 111.00140 * 206.42702 * 12 11 10 15 15 C 1.34781 * 119.99958 * 204.99764 * 14 12 11 16 16 O 1.21630 * 119.99698 * 359.97438 * 15 14 12 17 17 C 1.47164 * 120.00144 * 179.97438 * 15 14 12 18 18 C 1.38408 * 126.88123 * 179.71000 * 17 15 14 19 19 C 1.39672 * 105.35402 * 179.91721 * 18 17 15 20 20 C 1.50704 * 126.06796 * 180.16125 * 19 18 17 21 21 F 1.39901 * 109.47134 * 185.25199 * 20 19 18 22 22 F 1.39895 * 109.47059 * 305.24994 * 20 19 18 23 23 F 1.39895 * 109.46857 * 65.25135 * 20 19 18 24 24 N 1.30866 * 107.86427 * 0.35349 * 19 18 17 25 25 N 1.28442 * 110.92749 * 359.77302 * 24 19 18 26 26 H 0.96996 * 125.18993 * 180.02562 * 25 24 19 27 27 C 1.47427 * 125.64766 * 189.52206 * 9 7 2 28 28 H 0.96996 * 120.00046 * 184.81734 * 1 2 3 29 29 H 1.09005 * 109.87907 * 300.43686 * 10 9 7 30 30 H 1.09000 * 109.88183 * 61.60208 * 10 9 7 31 31 H 1.08997 * 110.71900 * 140.55103 * 11 10 9 32 32 H 1.08994 * 110.72122 * 263.82985 * 11 10 9 33 33 H 0.97001 * 120.00296 * 24.99684 * 14 12 11 34 34 H 1.07994 * 127.32230 * 0.03710 * 18 17 15 35 35 H 1.08990 * 110.36851 * 274.74900 * 27 9 7 36 36 H 1.08998 * 110.36440 * 37.07778 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6098 1.9817 1.3941 5 1 3.4873 1.4750 -0.8091 6 1 1.3962 2.6824 -0.5850 7 6 2.0102 -1.2022 -0.0005 8 1 1.5713 -2.0789 -0.4534 9 7 3.2514 -1.2765 0.5731 10 6 3.8790 -0.2321 1.3959 11 6 5.2776 -0.7451 1.7990 12 6 5.5834 -1.8102 0.7129 13 1 5.9704 -1.3442 -0.1932 14 7 6.5130 -2.8234 1.2182 15 6 7.2871 -3.5159 0.3593 16 8 7.2135 -3.2998 -0.8354 17 6 8.2213 -4.5334 0.8669 18 6 9.0731 -5.3264 0.1177 19 6 9.7491 -6.1221 1.0455 20 6 10.7966 -7.1585 0.7292 21 9 11.1562 -7.8311 1.9020 22 9 10.2822 -8.0745 -0.1947 23 9 11.9236 -6.5319 0.1867 24 7 9.3086 -5.8109 2.2378 25 7 8.4173 -4.8885 2.1712 26 1 7.9543 -4.5027 2.9313 27 6 4.1770 -2.4196 0.4733 28 1 -0.4850 -0.8370 0.0705 29 1 3.9736 0.6876 0.8186 30 1 3.2788 -0.0523 2.2878 31 1 6.0092 0.0621 1.7642 32 1 5.2508 -1.2004 2.7889 33 1 6.5714 -2.9960 2.1710 34 1 9.1914 -5.3281 -0.9557 35 1 3.9473 -3.1616 1.2379 36 1 4.1219 -2.8667 -0.5192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015844136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:52 Heat of formation + Delta-G solvation = -73.906880 kcal Electronic energy + Delta-G solvation = -25982.369739 eV Core-core repulsion = 21475.589087 eV Total energy + Delta-G solvation = -4506.780652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.48226 -48.00563 -47.98051 -43.35353 -39.88252 -37.73909 -34.62868 -33.18905 -32.34885 -31.55542 -29.59355 -28.09403 -27.04775 -24.74954 -23.45720 -22.01144 -21.36378 -21.15906 -20.28700 -19.55296 -18.89039 -18.65072 -17.94108 -17.53176 -16.52254 -16.36817 -16.08450 -15.49636 -14.88313 -14.82692 -14.70255 -14.59479 -14.40029 -14.30135 -14.11855 -14.10247 -13.74421 -13.47100 -13.20310 -12.83727 -12.70501 -12.22493 -11.82334 -11.53339 -11.31919 -11.15979 -10.76820 -10.44811 -10.41161 -10.34945 -9.84933 -9.68401 -9.31303 -9.18786 -8.52748 -7.18634 -6.43867 -3.26061 0.62876 1.43114 1.72420 2.34064 2.68632 2.80200 3.22148 3.36497 3.48915 3.53533 3.65834 4.00853 4.11728 4.36038 4.56701 4.66903 4.77121 4.86547 4.96511 5.17739 5.20530 5.37418 5.53928 5.65639 5.71061 5.91698 6.05145 6.07971 6.36693 6.38479 6.53866 6.60678 6.96346 7.15276 7.59569 7.77954 8.26862 8.94096 9.48913 10.14305 11.05252 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.002425 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.525556 B =11543.931076 C =11648.131273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.011 4.011 3 Si 1.053 2.947 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.120 3.880 11 C -0.134 4.134 12 C 0.124 3.876 13 H 0.107 0.893 14 N -0.710 5.710 15 C 0.588 3.412 16 O -0.506 6.506 17 C -0.020 4.020 18 C -0.107 4.107 19 C -0.071 4.071 20 C 0.562 3.438 21 F -0.167 7.167 22 F -0.166 7.166 23 F -0.167 7.167 24 N -0.210 5.210 25 N -0.355 5.355 26 H 0.454 0.546 27 C 0.128 3.872 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.393 0.607 34 H 0.181 0.819 35 H 0.027 0.973 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.450 -11.286 6.519 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.213 4.213 3 Si 0.886 3.114 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.333 5.333 10 C -0.005 4.005 11 C -0.173 4.173 12 C 0.019 3.981 13 H 0.125 0.875 14 N -0.361 5.361 15 C 0.371 3.629 16 O -0.378 6.378 17 C -0.148 4.148 18 C -0.136 4.136 19 C -0.229 4.229 20 C 0.506 3.494 21 F -0.148 7.148 22 F -0.147 7.147 23 F -0.148 7.148 24 N -0.047 5.047 25 N -0.074 5.074 26 H 0.301 0.699 27 C 0.000 4.000 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.227 0.773 34 H 0.198 0.802 35 H 0.045 0.955 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.209 -9.745 6.564 25.125 hybrid contribution 0.055 -1.495 0.166 1.505 sum 22.264 -11.240 6.730 25.832 Atomic orbital electron populations 1.70892 1.06208 1.29451 1.48336 1.25786 0.96110 1.00693 0.98717 0.83987 0.74370 0.76897 0.76175 1.22104 1.21937 1.22524 1.20020 0.89820 0.98219 1.38096 0.90322 1.44745 1.16243 1.14282 1.58072 1.21621 0.90918 0.92858 0.95108 1.22872 0.98376 0.98133 0.97910 1.22587 0.89518 0.87830 0.98164 0.87520 1.45872 1.40859 1.39899 1.09469 1.16814 0.79497 0.80066 0.86475 1.90916 1.67103 1.65385 1.14442 1.21971 1.04530 1.03675 0.84580 1.21915 0.95471 0.94833 1.01356 1.21671 1.04865 1.04561 0.91797 1.16694 0.79103 0.79006 0.74635 1.93236 1.92359 1.81386 1.47809 1.93254 1.86843 1.67840 1.66760 1.93251 1.53120 1.82308 1.86152 1.73078 1.03646 1.04551 1.23399 1.43750 1.28683 1.26790 1.08215 0.69870 1.21962 0.86959 0.91511 0.99522 0.92486 0.95135 0.93716 0.90576 0.90893 0.77308 0.80203 0.95508 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.70 55.49 0.76 -27.16 16 2 C -0.01 -0.33 5.41 -17.43 -0.09 -0.43 16 3 Si 1.05 25.89 24.74 -169.99 -4.21 21.68 16 4 H -0.29 -6.66 6.74 56.52 0.38 -6.28 16 5 H -0.29 -6.89 6.87 56.52 0.39 -6.51 16 6 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.33 -9.40 10.41 -15.06 -0.16 -9.56 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 9 N -0.61 -14.26 3.28 -169.93 -0.56 -14.82 16 10 C 0.12 2.42 4.99 -3.06 -0.02 2.41 16 11 C -0.13 -1.88 6.60 -24.89 -0.16 -2.04 16 12 C 0.12 1.83 3.44 -65.66 -0.23 1.61 16 13 H 0.11 1.78 7.54 -51.93 -0.39 1.38 16 14 N -0.71 -7.56 5.19 -52.76 -0.27 -7.84 16 15 C 0.59 7.09 7.80 -12.64 -0.10 6.99 16 16 O -0.51 -8.20 16.56 5.25 0.09 -8.11 16 17 C -0.02 -0.19 7.16 -82.06 -0.59 -0.78 16 18 C -0.11 -1.05 10.78 -38.98 -0.42 -1.47 16 19 C -0.07 -0.69 6.50 -82.47 -0.54 -1.22 16 20 C 0.56 5.18 3.51 36.01 0.13 5.30 16 21 F -0.17 -1.62 17.15 2.25 0.04 -1.58 16 22 F -0.17 -1.55 17.30 2.25 0.04 -1.51 16 23 F -0.17 -1.54 17.30 2.25 0.04 -1.50 16 24 N -0.21 -1.95 11.93 33.64 0.40 -1.55 16 25 N -0.35 -2.57 6.85 33.48 0.23 -2.34 16 26 H 0.45 1.60 8.22 -190.46 -1.57 0.04 16 27 C 0.13 2.44 6.93 -2.41 -0.02 2.42 16 28 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 29 H 0.03 0.66 3.71 -51.93 -0.19 0.47 16 30 H 0.04 0.93 8.01 -51.93 -0.42 0.52 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.39 2.66 7.75 -40.82 -0.32 2.34 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -34.00 320.75 -5.40 -39.40 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.60 Total: -2.73 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.19 Total: 3.23 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.56 Total: -53.72 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.12 Total: -4.58 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -4.21 Total: 21.68 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.00 -5.40 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015844136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.510 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds