Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00150 * 2 1 4 4 H 1.48506 * 109.47232 * 95.30351 * 3 2 1 5 5 H 1.48509 * 109.47165 * 215.30139 * 3 2 1 6 6 H 1.48502 * 109.47339 * 335.30189 * 3 2 1 7 7 C 1.38815 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00012 * 28.93408 * 7 2 1 9 9 N 1.36932 * 119.99996 * 208.93131 * 7 2 1 10 10 C 1.47022 * 125.64940 * 9.83510 * 9 7 2 11 11 C 1.54326 * 107.27374 * 181.02112 * 10 9 7 12 12 C 1.55160 * 102.93972 * 22.19335 * 11 10 9 13 13 H 1.08994 * 111.00666 * 82.57107 * 12 11 10 14 14 N 1.46501 * 111.00140 * 206.42702 * 12 11 10 15 15 C 1.34781 * 119.99958 * 204.99764 * 14 12 11 16 16 O 1.21630 * 119.99698 * 359.97438 * 15 14 12 17 17 C 1.47164 * 120.00144 * 179.97438 * 15 14 12 18 18 C 1.38408 * 126.88123 * 179.71000 * 17 15 14 19 19 C 1.39672 * 105.35402 * 179.91721 * 18 17 15 20 20 C 1.50704 * 126.06796 * 180.16125 * 19 18 17 21 21 F 1.39901 * 109.47134 * 185.25199 * 20 19 18 22 22 F 1.39895 * 109.47059 * 305.24994 * 20 19 18 23 23 F 1.39895 * 109.46857 * 65.25135 * 20 19 18 24 24 N 1.30866 * 107.86427 * 0.35349 * 19 18 17 25 25 N 1.28442 * 110.92749 * 359.77302 * 24 19 18 26 26 H 0.96996 * 125.18993 * 180.02562 * 25 24 19 27 27 C 1.47427 * 125.64766 * 189.52206 * 9 7 2 28 28 H 0.96996 * 120.00046 * 184.81734 * 1 2 3 29 29 H 1.09005 * 109.87907 * 300.43686 * 10 9 7 30 30 H 1.09000 * 109.88183 * 61.60208 * 10 9 7 31 31 H 1.08997 * 110.71900 * 140.55103 * 11 10 9 32 32 H 1.08994 * 110.72122 * 263.82985 * 11 10 9 33 33 H 0.97001 * 120.00296 * 24.99684 * 14 12 11 34 34 H 1.07994 * 127.32230 * 0.03710 * 18 17 15 35 35 H 1.08990 * 110.36851 * 274.74900 * 27 9 7 36 36 H 1.08998 * 110.36440 * 37.07778 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6098 1.9817 1.3941 5 1 3.4873 1.4750 -0.8091 6 1 1.3962 2.6824 -0.5850 7 6 2.0102 -1.2022 -0.0005 8 1 1.5713 -2.0789 -0.4534 9 7 3.2514 -1.2765 0.5731 10 6 3.8790 -0.2321 1.3959 11 6 5.2776 -0.7451 1.7990 12 6 5.5834 -1.8102 0.7129 13 1 5.9704 -1.3442 -0.1932 14 7 6.5130 -2.8234 1.2182 15 6 7.2871 -3.5159 0.3593 16 8 7.2135 -3.2998 -0.8354 17 6 8.2213 -4.5334 0.8669 18 6 9.0731 -5.3264 0.1177 19 6 9.7491 -6.1221 1.0455 20 6 10.7966 -7.1585 0.7292 21 9 11.1562 -7.8311 1.9020 22 9 10.2822 -8.0745 -0.1947 23 9 11.9236 -6.5319 0.1867 24 7 9.3086 -5.8109 2.2378 25 7 8.4173 -4.8885 2.1712 26 1 7.9543 -4.5027 2.9313 27 6 4.1770 -2.4196 0.4733 28 1 -0.4850 -0.8370 0.0705 29 1 3.9736 0.6876 0.8186 30 1 3.2788 -0.0523 2.2878 31 1 6.0092 0.0621 1.7642 32 1 5.2508 -1.2004 2.7889 33 1 6.5714 -2.9960 2.1710 34 1 9.1914 -5.3281 -0.9557 35 1 3.9473 -3.1616 1.2379 36 1 4.1219 -2.8667 -0.5192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015844136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = -100.513749 kcal Electronic energy + Delta-G solvation = -25983.523499 eV Core-core repulsion = 21475.589087 eV Total energy + Delta-G solvation = -4507.934413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.20676 -48.72708 -48.71198 -44.07940 -40.97842 -39.15945 -35.94914 -34.42037 -33.72538 -32.48641 -31.14911 -29.52725 -27.78051 -26.24984 -24.72219 -22.78252 -22.63154 -22.24394 -21.73694 -20.47800 -19.61142 -19.58100 -19.33206 -18.64411 -17.67074 -17.29566 -17.12644 -16.87819 -15.99996 -15.81176 -15.58825 -15.48292 -15.43698 -15.26671 -15.12737 -15.01256 -14.84788 -14.82802 -14.56069 -14.14532 -13.86960 -13.56563 -13.10551 -13.06456 -12.68679 -12.53666 -12.38643 -11.86022 -11.61788 -11.52103 -11.17442 -11.09952 -10.66809 -10.60480 -10.32289 -9.16360 -8.71388 -5.44419 -0.15897 0.67892 1.07382 1.39943 1.51658 1.53988 1.72855 1.84562 1.88481 2.49663 2.53464 2.80229 2.98048 3.28398 3.29249 3.42720 3.57513 3.66743 3.80256 3.97542 4.05471 4.14140 4.31966 4.42523 4.75451 4.80579 4.82048 4.87463 4.90672 5.12872 5.29366 5.51046 5.56843 6.08138 6.20477 6.35050 6.78772 6.87373 7.43440 8.07547 8.79507 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.002425 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.525556 B =11543.931076 C =11648.131273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.068 4.068 3 Si 1.100 2.900 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.308 1.308 7 C -0.328 4.328 8 H 0.041 0.959 9 N -0.629 5.629 10 C 0.105 3.895 11 C -0.115 4.115 12 C 0.142 3.858 13 H 0.091 0.909 14 N -0.691 5.691 15 C 0.596 3.404 16 O -0.551 6.551 17 C -0.022 4.022 18 C -0.111 4.111 19 C -0.081 4.081 20 C 0.566 3.434 21 F -0.169 7.169 22 F -0.167 7.167 23 F -0.167 7.167 24 N -0.211 5.211 25 N -0.329 5.329 26 H 0.471 0.529 27 C 0.123 3.877 28 H 0.251 0.749 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.185 0.815 35 H 0.040 0.960 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.314 -10.816 8.681 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.263 4.263 3 Si 0.927 3.073 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.237 1.237 7 C -0.457 4.457 8 H 0.059 0.941 9 N -0.357 5.357 10 C -0.019 4.019 11 C -0.153 4.153 12 C 0.036 3.964 13 H 0.109 0.891 14 N -0.343 5.343 15 C 0.380 3.620 16 O -0.426 6.426 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.238 4.238 20 C 0.510 3.490 21 F -0.151 7.151 22 F -0.149 7.149 23 F -0.148 7.148 24 N -0.048 5.048 25 N -0.052 5.052 26 H 0.323 0.677 27 C -0.004 4.004 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.255 0.745 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 25.125 -9.312 8.807 28.206 hybrid contribution -0.841 -1.816 -0.512 2.066 sum 24.284 -11.128 8.295 27.971 Atomic orbital electron populations 1.70997 1.07449 1.28620 1.51857 1.27047 0.96119 1.04259 0.98914 0.83373 0.73330 0.72504 0.78106 1.18530 1.20491 1.23688 1.19875 0.91938 0.96870 1.36989 0.94076 1.44785 1.15787 1.16578 1.58513 1.21864 0.94135 0.91944 0.93969 1.22850 0.94944 0.98621 0.98864 1.22059 0.87436 0.88339 0.98575 0.89139 1.45508 1.39444 1.38731 1.10649 1.16972 0.79308 0.79857 0.85832 1.90910 1.68487 1.66730 1.16506 1.21474 1.04479 1.03530 0.85542 1.22088 0.95312 0.94687 1.01891 1.21672 1.05288 1.04936 0.91866 1.16627 0.79040 0.78890 0.74473 1.93230 1.92388 1.81457 1.47978 1.93251 1.86864 1.67930 1.66822 1.93251 1.53152 1.82292 1.86146 1.73069 1.03822 1.04744 1.23192 1.43757 1.27729 1.25707 1.08033 0.67746 1.22084 0.89186 0.90664 0.98429 0.94057 0.95897 0.94330 0.87192 0.87160 0.74483 0.79786 0.94190 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.24 13.70 21.65 0.30 -59.94 16 2 C -0.07 -4.03 5.41 84.86 0.46 -3.57 16 3 Si 1.10 52.19 24.74 68.60 1.70 53.89 16 4 H -0.26 -10.82 6.74 99.48 0.67 -10.15 16 5 H -0.28 -12.42 6.87 99.48 0.68 -11.74 16 6 H -0.31 -15.05 7.11 99.48 0.71 -14.35 16 7 C -0.33 -18.99 10.41 84.04 0.87 -18.12 16 8 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 9 N -0.63 -29.34 3.28 -691.53 -2.27 -31.61 16 10 C 0.11 3.95 4.99 86.73 0.43 4.38 16 11 C -0.11 -2.64 6.60 31.78 0.21 -2.43 16 12 C 0.14 3.80 3.44 46.46 0.16 3.96 16 13 H 0.09 2.82 7.54 -2.39 -0.02 2.80 16 14 N -0.69 -12.20 5.19 -439.09 -2.28 -14.48 16 15 C 0.60 12.93 7.80 86.59 0.68 13.61 16 16 O -0.55 -17.30 16.56 -4.13 -0.07 -17.37 16 17 C -0.02 -0.37 7.16 40.79 0.29 -0.07 16 18 C -0.11 -1.98 10.78 22.66 0.24 -1.73 16 19 C -0.08 -1.40 6.50 43.05 0.28 -1.12 16 20 C 0.57 9.57 3.51 71.24 0.25 9.82 16 21 F -0.17 -3.02 17.15 44.97 0.77 -2.25 16 22 F -0.17 -2.92 17.30 44.97 0.78 -2.15 16 23 F -0.17 -2.84 17.30 44.97 0.78 -2.06 16 24 N -0.21 -3.31 11.93 -47.49 -0.57 -3.87 16 25 N -0.33 -3.64 6.85 -47.99 -0.33 -3.97 16 26 H 0.47 1.27 8.22 -220.01 -1.81 -0.54 16 27 C 0.12 4.59 6.93 86.93 0.60 5.19 16 28 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 29 H 0.02 0.92 3.71 -2.38 -0.01 0.91 16 30 H 0.04 1.50 8.01 -2.39 -0.02 1.48 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 1.77 8.00 -2.39 -0.02 1.75 16 33 H 0.42 3.51 7.75 -92.71 -0.72 2.79 16 34 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.72 320.75 1.84 -75.88 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -1.45 Total: -1.99 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.48 Total: 9.92 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.15 Total: -113.87 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.07 Total: -17.37 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 2.33 Total: -6.45 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.70 Total: 53.89 kcal Total: -77.72 1.84 -75.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015844136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.634 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds