Wall clock time and date at job start Tue Mar 31 2020 12:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47188 * 299.99881 * 3 2 1 6 6 H 1.48498 * 109.47323 * 59.99784 * 3 2 1 7 7 C 1.38811 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00432 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64675 * 0.02917 * 9 7 2 11 11 C 1.54316 * 107.27236 * 178.89406 * 10 9 7 12 12 C 1.55157 * 102.94147 * 337.80686 * 11 10 9 13 13 H 1.08997 * 111.00645 * 153.61797 * 12 11 10 14 14 N 1.46499 * 111.00357 * 277.42637 * 12 11 10 15 15 C 1.34777 * 120.00289 * 204.99987 * 14 12 11 16 16 O 1.21534 * 119.99533 * 0.02562 * 15 14 12 17 17 C 1.48050 * 120.00137 * 180.02562 * 15 14 12 18 18 C 1.39524 * 119.46496 * 179.90097 * 17 15 14 19 19 C 1.38461 * 119.39298 * 179.97438 * 18 17 15 20 20 C 1.38664 * 118.36054 * 0.07815 * 19 18 17 21 21 O 1.35039 * 134.03298 * 179.97438 * 20 19 18 22 22 C 1.34382 * 108.13109 * 180.02562 * 21 20 19 23 23 O 1.35082 * 124.89203 * 179.97438 * 22 21 20 24 24 N 1.30715 * 110.21793 * 0.02562 * 22 21 20 25 25 C 1.36027 * 108.82648 * 0.02562 * 24 22 21 26 26 N 1.32524 * 133.38214 * 180.02562 * 25 24 22 27 27 C 1.47419 * 125.65209 * 179.97438 * 9 7 2 28 28 H 0.97009 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88592 * 59.47247 * 10 9 7 30 30 H 1.08997 * 109.88411 * 298.30927 * 10 9 7 31 31 H 1.08998 * 110.72233 * 219.44210 * 11 10 9 32 32 H 1.09003 * 110.72487 * 96.16975 * 11 10 9 33 33 H 0.96996 * 120.00111 * 24.99949 * 14 12 11 34 34 H 1.08005 * 120.30715 * 0.07517 * 18 17 15 35 35 H 1.08001 * 120.82097 * 180.09605 * 19 18 17 36 36 H 0.96700 * 114.00079 * 270.03070 * 23 22 21 37 37 H 1.08996 * 110.36524 * 85.33376 * 27 9 7 38 38 H 1.09003 * 110.36758 * 323.01889 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0006 11 6 -0.4486 -4.0439 -0.0290 12 6 0.8517 -4.6554 -0.6144 13 1 0.9832 -5.6852 -0.2825 14 7 0.8583 -4.5734 -2.0771 15 6 1.5901 -5.4461 -2.7978 16 8 2.2441 -6.3014 -2.2341 17 6 1.5971 -5.3629 -4.2759 18 6 2.3603 -6.2708 -5.0108 19 6 2.3654 -6.1919 -6.3931 20 6 1.6056 -5.2029 -6.9993 21 8 1.3829 -4.8441 -8.2819 22 6 0.5447 -3.7938 -8.2828 23 8 0.0971 -3.1633 -9.3905 24 7 0.2257 -3.4693 -7.0574 25 6 0.8591 -4.3147 -6.2004 26 7 0.8814 -4.4240 -4.8799 27 6 1.9333 -3.7312 -0.0016 28 1 -0.4850 0.8402 -0.0004 29 1 -0.5577 -2.0511 -0.8836 30 1 -0.5544 -2.0854 0.9018 31 1 -1.2987 -4.2506 -0.6792 32 1 -0.6318 -4.4191 0.9779 33 1 0.3360 -3.8910 -2.5270 34 1 2.9405 -7.0292 -4.5061 35 1 2.9466 -6.8838 -6.9847 36 1 0.6570 -2.4294 -9.6787 37 1 2.1662 -4.0429 1.0165 38 1 2.8329 -3.7400 -0.6170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015988823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:11 Heat of formation + Delta-G solvation = 26.217124 kcal Electronic energy + Delta-G solvation = -25983.841680 eV Core-core repulsion = 22023.259471 eV Total energy + Delta-G solvation = -3960.582209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.81421 -40.33794 -38.94533 -38.19127 -37.13584 -35.15421 -33.87002 -32.74184 -31.65581 -30.27765 -29.12389 -27.32899 -25.43441 -24.41336 -24.02849 -22.64033 -21.58303 -20.17063 -20.06176 -19.79359 -18.90006 -18.09995 -17.67358 -17.22765 -16.76474 -15.87803 -15.46853 -15.21025 -14.93503 -14.60933 -14.32302 -14.09664 -13.82781 -13.63065 -13.48006 -13.10030 -12.93717 -12.41699 -11.91152 -11.85276 -11.78971 -11.37559 -10.94072 -10.88039 -10.71921 -10.46268 -10.17209 -10.07887 -9.92540 -9.91519 -9.64891 -9.63516 -9.19012 -8.74921 -8.50407 -6.78256 -5.67939 -3.00521 0.04454 0.25599 1.31006 1.75379 2.54704 2.65176 3.25107 3.42411 3.47947 3.50288 3.59959 3.74699 3.89779 4.41638 4.53382 4.60544 4.71194 4.92599 5.12843 5.30756 5.40699 5.45230 5.51848 5.53214 5.78426 5.83441 5.86783 6.20917 6.38499 6.48025 6.50466 6.52748 6.68549 6.84608 6.98167 7.30715 7.58408 7.61383 7.82602 7.85587 8.28757 8.35910 9.25777 9.85843 10.51191 11.44075 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.003773 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.262573 B = 7418.679802 C = 8876.222405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.154 4.154 12 C 0.124 3.876 13 H 0.094 0.906 14 N -0.676 5.676 15 C 0.571 3.429 16 O -0.538 6.538 17 C 0.121 3.879 18 C -0.095 4.095 19 C -0.042 4.042 20 C -0.022 4.022 21 O -0.220 6.220 22 C 0.445 3.555 23 O -0.402 6.402 24 N -0.444 5.444 25 C 0.243 3.757 26 N -0.403 5.403 27 C 0.126 3.874 28 H 0.251 0.749 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.416 0.584 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.426 0.574 37 H 0.030 0.970 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -12.707 -16.613 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.192 4.192 12 C 0.018 3.982 13 H 0.112 0.888 14 N -0.325 5.325 15 C 0.354 3.646 16 O -0.415 6.415 17 C -0.028 4.028 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.075 4.075 21 O -0.113 6.113 22 C 0.192 3.808 23 O -0.211 6.211 24 N -0.188 5.188 25 C 0.003 3.997 26 N -0.117 5.117 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.190 0.810 35 H 0.176 0.824 36 H 0.288 0.712 37 H 0.048 0.952 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.252 -12.332 -15.603 19.928 hybrid contribution 1.328 0.801 -1.359 2.062 sum 2.580 -11.531 -16.961 20.672 Atomic orbital electron populations 1.69960 1.04807 1.24842 1.57304 1.24767 0.95703 0.97553 1.02354 0.86068 0.78713 0.83936 0.77190 1.20603 1.21829 1.21781 1.19082 0.90419 0.82380 1.43454 0.90524 1.44481 1.01508 0.99855 1.87222 1.21193 0.84520 0.87937 1.01389 1.23235 0.95625 1.00091 1.00288 1.22290 0.97902 0.99768 0.78194 0.88788 1.45777 1.46527 1.32727 1.07458 1.17550 0.80464 0.82206 0.84397 1.90783 1.43312 1.36779 1.70626 1.21370 0.94465 0.91639 0.95307 1.22034 0.98081 0.99407 0.92021 1.20369 0.97271 0.95544 0.93751 1.21077 1.03327 1.01430 0.81692 1.84484 1.54820 1.44090 1.27859 1.22486 0.86700 0.84851 0.86781 1.84898 1.48474 1.49291 1.38392 1.71010 1.25247 1.25022 0.97549 1.19813 0.96178 0.93127 0.90552 1.66694 1.17799 1.19496 1.07718 1.21938 0.94640 0.86405 0.97139 0.93847 0.93411 0.93679 0.91425 0.90745 0.74705 0.81046 0.82430 0.71174 0.95195 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.38 3.39 -170.09 -0.58 -15.96 16 10 C 0.17 4.15 5.36 -3.07 -0.02 4.13 16 11 C -0.15 -2.77 6.55 -24.90 -0.16 -2.93 16 12 C 0.12 2.23 3.43 -65.79 -0.23 2.00 16 13 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 14 N -0.68 -11.89 5.18 -52.61 -0.27 -12.16 16 15 C 0.57 9.44 7.81 -12.24 -0.10 9.34 16 16 O -0.54 -9.55 15.93 5.34 0.09 -9.46 16 17 C 0.12 1.74 6.74 -83.03 -0.56 1.18 16 18 C -0.09 -1.01 9.61 -39.02 -0.38 -1.38 16 19 C -0.04 -0.38 10.17 -39.34 -0.40 -0.78 16 20 C -0.02 -0.25 7.44 -38.43 -0.29 -0.54 16 21 O -0.22 -2.30 10.78 -19.87 -0.21 -2.51 16 22 C 0.45 4.68 9.53 52.29 0.50 5.17 16 23 O -0.40 -2.66 13.62 -40.25 -0.55 -3.21 16 24 N -0.44 -6.34 11.37 -14.31 -0.16 -6.50 16 25 C 0.24 3.58 8.38 -157.08 -1.32 2.26 16 26 N -0.40 -6.44 9.57 -9.24 -0.09 -6.53 16 27 C 0.13 2.68 6.93 -2.53 -0.02 2.66 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 30 H 0.05 1.19 7.51 -51.93 -0.39 0.80 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.42 7.66 7.98 -40.82 -0.33 7.34 16 34 H 0.17 1.49 7.61 -52.48 -0.40 1.09 16 35 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.43 0.22 9.06 45.56 0.41 0.64 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -35.48 332.57 -7.56 -43.04 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.14 Total: 3.08 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -3.21 Total: 14.32 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.53 Total: -67.70 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.68 Total: -15.18 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.48 -7.56 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015988823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.259 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds