Wall clock time and date at job start Tue Mar 31 2020 12:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47188 * 299.99881 * 3 2 1 6 6 H 1.48498 * 109.47323 * 59.99784 * 3 2 1 7 7 C 1.38811 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00432 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64675 * 0.02917 * 9 7 2 11 11 C 1.54316 * 107.27236 * 178.89406 * 10 9 7 12 12 C 1.55157 * 102.94147 * 337.80686 * 11 10 9 13 13 H 1.08997 * 111.00645 * 153.61797 * 12 11 10 14 14 N 1.46499 * 111.00357 * 277.42637 * 12 11 10 15 15 C 1.34777 * 120.00289 * 204.99987 * 14 12 11 16 16 O 1.21534 * 119.99533 * 0.02562 * 15 14 12 17 17 C 1.48050 * 120.00137 * 180.02562 * 15 14 12 18 18 C 1.39524 * 119.46496 * 179.90097 * 17 15 14 19 19 C 1.38461 * 119.39298 * 179.97438 * 18 17 15 20 20 C 1.38664 * 118.36054 * 0.07815 * 19 18 17 21 21 O 1.35039 * 134.03298 * 179.97438 * 20 19 18 22 22 C 1.34382 * 108.13109 * 180.02562 * 21 20 19 23 23 O 1.35082 * 124.89203 * 179.97438 * 22 21 20 24 24 N 1.30715 * 110.21793 * 0.02562 * 22 21 20 25 25 C 1.36027 * 108.82648 * 0.02562 * 24 22 21 26 26 N 1.32524 * 133.38214 * 180.02562 * 25 24 22 27 27 C 1.47419 * 125.65209 * 179.97438 * 9 7 2 28 28 H 0.97009 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88592 * 59.47247 * 10 9 7 30 30 H 1.08997 * 109.88411 * 298.30927 * 10 9 7 31 31 H 1.08998 * 110.72233 * 219.44210 * 11 10 9 32 32 H 1.09003 * 110.72487 * 96.16975 * 11 10 9 33 33 H 0.96996 * 120.00111 * 24.99949 * 14 12 11 34 34 H 1.08005 * 120.30715 * 0.07517 * 18 17 15 35 35 H 1.08001 * 120.82097 * 180.09605 * 19 18 17 36 36 H 0.96700 * 114.00079 * 270.03070 * 23 22 21 37 37 H 1.08996 * 110.36524 * 85.33376 * 27 9 7 38 38 H 1.09003 * 110.36758 * 323.01889 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0006 11 6 -0.4486 -4.0439 -0.0290 12 6 0.8517 -4.6554 -0.6144 13 1 0.9832 -5.6852 -0.2825 14 7 0.8583 -4.5734 -2.0771 15 6 1.5901 -5.4461 -2.7978 16 8 2.2441 -6.3014 -2.2341 17 6 1.5971 -5.3629 -4.2759 18 6 2.3603 -6.2708 -5.0108 19 6 2.3654 -6.1919 -6.3931 20 6 1.6056 -5.2029 -6.9993 21 8 1.3829 -4.8441 -8.2819 22 6 0.5447 -3.7938 -8.2828 23 8 0.0971 -3.1633 -9.3905 24 7 0.2257 -3.4693 -7.0574 25 6 0.8591 -4.3147 -6.2004 26 7 0.8814 -4.4240 -4.8799 27 6 1.9333 -3.7312 -0.0016 28 1 -0.4850 0.8402 -0.0004 29 1 -0.5577 -2.0511 -0.8836 30 1 -0.5544 -2.0854 0.9018 31 1 -1.2987 -4.2506 -0.6792 32 1 -0.6318 -4.4191 0.9779 33 1 0.3360 -3.8910 -2.5270 34 1 2.9405 -7.0292 -4.5061 35 1 2.9466 -6.8838 -6.9847 36 1 0.6570 -2.4294 -9.6787 37 1 2.1662 -4.0429 1.0165 38 1 2.8329 -3.7400 -0.6170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015988823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:10 Heat of formation + Delta-G solvation = -4.805764 kcal Electronic energy + Delta-G solvation = -25985.186933 eV Core-core repulsion = 22023.259471 eV Total energy + Delta-G solvation = -3961.927463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.67343 -41.47769 -40.05957 -39.00591 -38.62453 -36.04583 -35.49012 -33.99472 -33.21415 -31.36503 -30.86002 -29.00546 -26.75653 -26.05131 -24.96642 -23.51698 -22.81882 -21.94668 -21.29890 -20.87643 -19.94627 -19.04254 -18.87732 -18.48577 -18.14126 -17.29880 -16.66203 -16.41871 -16.16757 -16.01535 -15.70115 -15.48678 -15.05265 -14.84706 -14.64504 -14.28466 -13.95560 -13.83530 -13.63989 -13.55738 -12.90489 -12.83475 -12.73762 -12.30388 -12.26667 -12.12275 -11.99948 -11.82516 -11.60566 -11.46697 -10.82624 -10.73031 -10.68975 -10.19087 -10.01058 -8.85750 -7.84795 -5.18940 -0.75844 -0.70370 0.54303 0.93267 1.44012 1.44892 1.50535 1.55001 1.66307 2.07171 2.48822 2.54249 2.87516 3.01989 3.34483 3.53489 3.64641 3.68124 3.81749 3.92466 4.07630 4.08955 4.32456 4.41226 4.61157 4.67348 4.70734 4.75170 4.90649 4.98327 5.03201 5.04416 5.44705 5.49702 5.67001 5.77315 5.91661 6.12087 6.20279 6.29774 6.54141 7.02464 7.11672 7.78088 8.41852 9.25595 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.003773 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.262573 B = 7418.679802 C = 8876.222405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.622 5.622 10 C 0.183 3.817 11 C -0.135 4.135 12 C 0.137 3.863 13 H 0.118 0.882 14 N -0.685 5.685 15 C 0.573 3.427 16 O -0.551 6.551 17 C 0.099 3.901 18 C -0.087 4.087 19 C -0.015 4.015 20 C -0.020 4.020 21 O -0.210 6.210 22 C 0.469 3.531 23 O -0.395 6.395 24 N -0.496 5.496 25 C 0.215 3.785 26 N -0.444 5.444 27 C 0.123 3.877 28 H 0.246 0.754 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.195 0.805 35 H 0.208 0.792 36 H 0.453 0.547 37 H 0.042 0.958 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -14.555 -18.421 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.058 3.942 11 C -0.173 4.173 12 C 0.032 3.968 13 H 0.136 0.864 14 N -0.334 5.334 15 C 0.358 3.642 16 O -0.429 6.429 17 C -0.048 4.048 18 C -0.108 4.108 19 C -0.042 4.042 20 C -0.074 4.074 21 O -0.102 6.102 22 C 0.216 3.784 23 O -0.208 6.208 24 N -0.242 5.242 25 C -0.025 4.025 26 N -0.159 5.159 27 C -0.004 4.004 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.246 0.754 34 H 0.212 0.788 35 H 0.225 0.775 36 H 0.321 0.679 37 H 0.059 0.941 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.592 -14.197 -17.428 22.627 hybrid contribution 0.934 1.387 -0.941 1.919 sum 3.526 -12.810 -18.369 22.671 Atomic orbital electron populations 1.70174 1.06088 1.25079 1.58312 1.25562 0.96594 1.00702 1.02677 0.85072 0.78110 0.79795 0.76737 1.19319 1.22095 1.21629 1.19412 0.90771 0.83854 1.42876 0.90609 1.44726 1.02401 1.00754 1.87027 1.20937 0.83580 0.91590 0.98049 1.23091 0.96419 0.95509 1.02303 1.22167 0.96136 0.99949 0.78590 0.86421 1.45835 1.47126 1.33112 1.07277 1.17867 0.79474 0.81386 0.85500 1.90757 1.43656 1.37126 1.71357 1.21191 0.96270 0.93138 0.94174 1.22276 0.97133 0.98671 0.92673 1.20883 0.95567 0.94558 0.93151 1.21316 1.03101 1.01358 0.81599 1.84518 1.54639 1.43986 1.27105 1.22518 0.84879 0.84106 0.86872 1.84891 1.49085 1.50189 1.36679 1.70940 1.27436 1.26808 0.98979 1.19975 0.97501 0.94459 0.90565 1.66492 1.19410 1.20939 1.09033 1.22098 0.95160 0.85311 0.97785 0.94446 0.96960 0.97046 0.89445 0.88324 0.75449 0.78780 0.77460 0.67919 0.94051 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.87 10.31 21.65 0.22 -57.65 16 2 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.62 -32.52 3.39 -692.04 -2.35 -34.87 16 10 C 0.18 9.03 5.36 86.73 0.47 9.49 16 11 C -0.13 -4.77 6.55 31.78 0.21 -4.56 16 12 C 0.14 4.82 3.43 46.38 0.16 4.98 16 13 H 0.12 3.66 7.54 -2.39 -0.02 3.65 16 14 N -0.69 -24.25 5.18 -438.64 -2.27 -26.52 16 15 C 0.57 18.74 7.81 86.85 0.68 19.41 16 16 O -0.55 -18.86 15.93 -3.82 -0.06 -18.92 16 17 C 0.10 2.81 6.74 41.94 0.28 3.10 16 18 C -0.09 -1.63 9.61 22.63 0.22 -1.42 16 19 C -0.02 -0.22 10.17 22.42 0.23 0.01 16 20 C -0.02 -0.42 7.44 23.01 0.17 -0.25 16 21 O -0.21 -3.87 10.78 11.64 0.13 -3.75 16 22 C 0.47 9.18 9.53 130.41 1.24 10.43 16 23 O -0.40 -4.37 13.62 -61.29 -0.83 -5.21 16 24 N -0.50 -14.21 11.37 -427.50 -4.86 -19.07 16 25 C 0.21 6.31 8.38 134.44 1.13 7.44 16 26 N -0.44 -14.48 9.57 -183.14 -1.75 -16.24 16 27 C 0.12 5.22 6.93 86.85 0.60 5.83 16 28 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 29 H 0.01 0.68 7.38 -2.39 -0.02 0.66 16 30 H 0.01 0.63 7.51 -2.39 -0.02 0.61 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.41 15.67 7.98 -92.71 -0.74 14.93 16 34 H 0.20 2.72 7.61 -2.91 -0.02 2.70 16 35 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 36 H 0.45 -0.68 9.06 -74.06 -0.67 -1.35 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.80 332.57 -3.30 -84.10 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.26 Total: 10.67 kcal Atomic # 6 Polarization: 31.59 SS G_CDS: 6.71 Total: 38.30 kcal Atomic # 7 Polarization: -143.33 SS G_CDS: -11.01 Total: -154.34 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.77 Total: -27.87 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.80 -3.30 -84.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015988823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.296 kcal (2) G-P(sol) polarization free energy of solvation -80.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds