Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64695 * 0.02562 * 9 7 2 11 11 C 1.54320 * 107.27210 * 181.02594 * 10 9 7 12 12 C 1.55159 * 102.94349 * 22.19183 * 11 10 9 13 13 H 1.08993 * 111.00686 * 206.38740 * 12 11 10 14 14 N 1.46501 * 111.00248 * 82.57245 * 12 11 10 15 15 C 1.34776 * 119.99796 * 155.00033 * 14 12 11 16 16 O 1.21534 * 120.00111 * 0.02562 * 15 14 12 17 17 C 1.48054 * 119.99800 * 179.97438 * 15 14 12 18 18 C 1.39525 * 119.46588 * 179.72666 * 17 15 14 19 19 C 1.38464 * 119.39293 * 179.77013 * 18 17 15 20 20 C 1.38658 * 118.35993 * 0.49810 * 19 18 17 21 21 O 1.35045 * 134.03433 * 179.71813 * 20 19 18 22 22 C 1.34378 * 108.13146 * 180.02562 * 21 20 19 23 23 O 1.35081 * 124.89528 * 179.97438 * 22 21 20 24 24 N 1.30726 * 110.21904 * 0.02562 * 22 21 20 25 25 C 1.36032 * 108.82505 * 359.97438 * 24 22 21 26 26 N 1.32525 * 133.37856 * 179.97438 * 25 24 22 27 27 C 1.47421 * 125.64870 * 179.71941 * 9 7 2 28 28 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.88204 * 300.44306 * 10 9 7 30 30 H 1.08994 * 109.88560 * 61.60505 * 10 9 7 31 31 H 1.08996 * 110.72172 * 140.55457 * 11 10 9 32 32 H 1.08998 * 110.72014 * 263.65340 * 11 10 9 33 33 H 0.97002 * 119.99871 * 335.00179 * 14 12 11 34 34 H 1.08004 * 120.30364 * 0.02988 * 18 17 15 35 35 H 1.07996 * 120.81800 * 180.24301 * 19 18 17 36 36 H 0.96695 * 114.00449 * 179.97438 * 23 22 21 37 37 H 1.08996 * 110.36244 * 274.74425 * 27 9 7 38 38 H 1.08997 * 110.36930 * 37.06508 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1374 -2.5329 -0.0005 11 6 -0.4483 -4.0442 0.0263 12 6 0.8516 -4.6561 0.6120 13 1 0.9834 -5.6855 0.2791 14 7 0.8572 -4.5754 2.0748 15 6 1.5886 -5.4489 2.7950 16 8 2.2438 -6.3030 2.2310 17 6 1.5947 -5.3670 4.2733 18 6 2.3512 -6.2804 5.0082 19 6 2.3596 -6.1995 6.3904 20 6 1.6001 -5.2105 6.9969 21 8 1.3760 -4.8533 8.2798 22 6 0.5381 -3.8028 8.2811 23 8 0.0886 -3.1742 9.3890 24 7 0.2197 -3.4773 7.0557 25 6 0.8533 -4.3223 6.1984 26 7 0.8761 -4.4306 4.8777 27 6 1.9336 -3.7311 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 -0.5581 -2.0521 0.8827 30 1 -0.5536 -2.0847 -0.9027 31 1 -1.2988 -4.2515 0.6757 32 1 -0.6338 -4.4177 -0.9808 33 1 0.3345 -3.8934 2.5249 34 1 2.9283 -7.0410 4.5033 35 1 2.9401 -6.8921 6.9817 36 1 -0.5085 -2.4356 9.2073 37 1 2.1630 -4.0395 -1.0247 38 1 2.8352 -3.7419 0.6076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015988824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = -4.745496 kcal Electronic energy + Delta-G solvation = -25986.642424 eV Core-core repulsion = 22024.717575 eV Total energy + Delta-G solvation = -3961.924849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.68918 -41.45830 -40.05485 -39.17961 -38.66135 -35.94158 -35.47987 -33.98239 -33.19546 -31.33620 -30.84896 -28.99295 -26.78332 -26.09418 -24.86303 -23.70037 -22.81009 -21.93860 -21.29343 -20.43497 -20.10344 -18.98695 -18.69545 -18.65128 -18.47290 -17.34186 -16.66936 -16.35975 -16.21566 -15.86898 -15.57860 -15.29320 -15.04113 -14.91360 -14.61330 -14.52882 -14.26580 -13.94771 -13.82970 -13.55626 -12.89788 -12.83386 -12.41512 -12.36632 -12.28663 -12.11912 -11.99888 -11.81924 -11.59931 -11.45248 -10.82779 -10.72623 -10.66165 -10.13602 -9.82254 -8.85305 -7.84579 -5.18625 -0.69444 -0.58623 0.29259 1.03652 1.44247 1.44945 1.53595 1.55092 1.71484 2.09627 2.49017 2.57613 2.86789 3.04644 3.34569 3.50382 3.67582 3.68647 3.82627 3.91727 4.07690 4.14057 4.28839 4.33182 4.63333 4.67615 4.70166 4.75612 4.91114 4.98910 5.03774 5.04836 5.44930 5.50639 5.67518 5.67667 5.77693 6.14164 6.20932 6.39858 6.58435 7.04089 7.12119 7.78375 8.42124 9.25803 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.003773 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.726451 B = 7419.893909 C = 8872.603831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.184 3.816 11 C -0.134 4.134 12 C 0.137 3.863 13 H 0.117 0.883 14 N -0.685 5.685 15 C 0.573 3.427 16 O -0.552 6.552 17 C 0.100 3.900 18 C -0.096 4.096 19 C -0.010 4.010 20 C -0.037 4.037 21 O -0.193 6.193 22 C 0.493 3.507 23 O -0.393 6.393 24 N -0.542 5.542 25 C 0.236 3.764 26 N -0.449 5.449 27 C 0.122 3.878 28 H 0.246 0.754 29 H 0.013 0.987 30 H 0.011 0.989 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.193 0.807 35 H 0.206 0.794 36 H 0.466 0.534 37 H 0.042 0.958 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -14.434 17.868 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.059 3.941 11 C -0.173 4.173 12 C 0.032 3.968 13 H 0.135 0.865 14 N -0.333 5.333 15 C 0.358 3.642 16 O -0.430 6.430 17 C -0.045 4.045 18 C -0.117 4.117 19 C -0.036 4.036 20 C -0.090 4.090 21 O -0.086 6.086 22 C 0.241 3.759 23 O -0.198 6.198 24 N -0.295 5.295 25 C -0.005 4.005 26 N -0.165 5.165 27 C -0.004 4.004 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.246 0.754 34 H 0.210 0.790 35 H 0.223 0.777 36 H 0.332 0.668 37 H 0.059 0.941 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.650 -14.085 17.255 22.283 hybrid contribution 0.348 1.419 0.662 1.604 sum 0.998 -12.666 17.917 21.964 Atomic orbital electron populations 1.70167 1.06044 1.25085 1.58321 1.25550 0.96597 1.00649 1.02675 0.85079 0.78088 0.79838 0.76754 1.19413 1.21618 1.22049 1.19410 0.90755 0.83882 1.42876 0.90684 1.44726 1.02434 1.00734 1.87020 1.20939 0.83537 0.91591 0.98064 1.23085 0.96405 0.95499 1.02307 1.22182 0.96128 0.99895 0.78632 0.86496 1.45814 1.47142 1.33108 1.07216 1.17882 0.79445 0.81362 0.85541 1.90755 1.43605 1.37260 1.71384 1.21162 0.96117 0.93134 0.94107 1.22206 0.97845 0.99076 0.92539 1.20828 0.95234 0.94447 0.93123 1.21350 1.04486 1.02217 0.80947 1.84366 1.55036 1.41854 1.27367 1.22389 0.84750 0.83067 0.85721 1.84708 1.64599 1.49407 1.21083 1.71079 1.30767 1.29496 0.98181 1.19926 0.96475 0.93634 0.90428 1.66520 1.19784 1.21299 1.08919 1.22143 0.95171 0.85337 0.97744 0.94426 0.96884 0.97066 0.89403 0.88352 0.75406 0.78972 0.77697 0.66774 0.94055 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.31 21.65 0.22 -57.38 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.24 -13.88 10.28 84.03 0.86 -13.01 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -32.50 3.39 -691.57 -2.35 -34.85 16 10 C 0.18 8.99 5.36 86.73 0.46 9.46 16 11 C -0.13 -4.73 6.54 31.78 0.21 -4.53 16 12 C 0.14 4.82 3.43 46.46 0.16 4.98 16 13 H 0.12 3.65 7.54 -2.39 -0.02 3.63 16 14 N -0.68 -24.20 5.19 -438.25 -2.27 -26.48 16 15 C 0.57 18.87 7.81 86.85 0.68 19.54 16 16 O -0.55 -19.11 15.93 -3.82 -0.06 -19.17 16 17 C 0.10 2.88 6.74 41.94 0.28 3.16 16 18 C -0.10 -1.87 9.61 22.63 0.22 -1.65 16 19 C -0.01 -0.16 10.17 22.42 0.23 0.07 16 20 C -0.04 -0.80 7.44 23.01 0.17 -0.63 16 21 O -0.19 -3.82 10.78 11.61 0.13 -3.70 16 22 C 0.49 9.43 9.53 130.41 1.24 10.67 16 23 O -0.39 -4.04 13.62 -61.27 -0.83 -4.88 16 24 N -0.54 -14.40 11.37 -427.49 -4.86 -19.25 16 25 C 0.24 6.84 8.38 134.44 1.13 7.97 16 26 N -0.45 -14.58 9.57 -183.13 -1.75 -16.33 16 27 C 0.12 5.22 6.95 86.93 0.60 5.83 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.01 0.71 7.38 -2.38 -0.02 0.70 16 30 H 0.01 0.61 7.51 -2.39 -0.02 0.59 16 31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.41 15.58 7.98 -92.71 -0.74 14.84 16 34 H 0.19 2.86 7.61 -2.91 -0.02 2.84 16 35 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.47 0.30 9.06 -74.06 -0.67 -0.37 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -79.10 332.60 -3.30 -82.40 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -0.26 Total: 11.76 kcal Atomic # 6 Polarization: 32.04 SS G_CDS: 6.71 Total: 38.76 kcal Atomic # 7 Polarization: -143.28 SS G_CDS: -11.01 Total: -154.29 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.77 Total: -27.74 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -79.10 -3.30 -82.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015988824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.656 kcal (2) G-P(sol) polarization free energy of solvation -79.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds