Wall clock time and date at job start Tue Mar 31 2020 12:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48498 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46949 * 299.99459 * 3 2 1 6 6 H 1.48500 * 109.47182 * 59.99618 * 3 2 1 7 7 C 1.38807 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.65017 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.27254 * 178.99017 * 10 9 7 12 12 C 1.55162 * 102.93877 * 337.80553 * 11 10 9 13 13 H 1.09000 * 111.00231 * 153.61904 * 12 11 10 14 14 N 1.46500 * 111.00247 * 277.42719 * 12 11 10 15 15 C 1.34777 * 120.00145 * 205.00285 * 14 12 11 16 16 O 1.21623 * 119.99557 * 359.97438 * 15 14 12 17 17 C 1.47340 * 120.00273 * 180.02562 * 15 14 12 18 18 N 1.35218 * 126.55704 * 0.02725 * 17 15 14 19 19 C 1.29992 * 108.83706 * 179.97438 * 18 17 15 20 20 O 1.33985 * 109.70775 * 359.75436 * 19 18 17 21 21 C 1.34782 * 108.10262 * 0.40063 * 20 19 18 22 22 C 1.47763 * 126.76319 * 179.87980 * 21 20 19 23 23 C 1.42482 * 126.97039 * 359.67781 * 22 21 20 24 24 C 1.35181 * 103.92792 * 179.77895 * 23 22 21 25 25 O 1.34080 * 106.74022 * 0.22393 * 24 23 22 26 26 N 1.20906 * 111.89866 * 0.02562 * 25 24 23 27 27 C 1.47430 * 125.64947 * 180.02562 * 9 7 2 28 28 H 0.96998 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.88072 * 59.56244 * 10 9 7 30 30 H 1.09000 * 109.87663 * 298.40639 * 10 9 7 31 31 H 1.08997 * 110.71444 * 219.44577 * 11 10 9 32 32 H 1.09000 * 110.87508 * 96.23885 * 11 10 9 33 33 H 0.97001 * 119.99912 * 25.00589 * 14 12 11 34 34 H 1.08008 * 125.14601 * 179.97438 * 19 18 17 35 35 H 1.08002 * 128.04002 * 0.04623 * 23 22 21 36 36 H 1.08001 * 126.63160 * 180.20822 * 24 23 22 37 37 H 1.09002 * 110.36679 * 85.24438 * 27 9 7 38 38 H 1.08995 * 110.36279 * 322.91901 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4485 -4.0442 -0.0254 12 6 0.8520 -4.6564 -0.6098 13 1 0.9835 -5.6857 -0.2761 14 7 0.8587 -4.5768 -2.0726 15 6 1.5906 -5.4506 -2.7917 16 8 2.2458 -6.3050 -2.2262 17 6 1.5978 -5.3702 -4.2629 18 7 0.9241 -4.4784 -5.0241 19 6 1.1774 -4.7193 -6.2761 20 8 2.0175 -5.7583 -6.3753 21 6 2.2957 -6.1924 -5.1300 22 6 3.1773 -7.3199 -4.7628 23 6 3.8977 -8.1691 -5.6517 24 6 4.5467 -9.0243 -4.8302 25 8 4.2122 -8.6849 -3.5770 26 7 3.4527 -7.7444 -3.5520 27 6 1.9335 -3.7312 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0525 -0.8832 30 1 -0.5543 -2.0840 0.9022 31 1 -1.2984 -4.2518 -0.6754 32 1 -0.6334 -4.4200 0.9809 33 1 0.3364 -3.8950 -2.5236 34 1 0.7746 -4.1635 -7.1101 35 1 3.9233 -8.1345 -6.7308 36 1 5.2068 -9.8262 -5.1262 37 1 2.1663 -4.0414 1.0203 38 1 2.8330 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016006733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:45 Heat of formation + Delta-G solvation = 75.532464 kcal Electronic energy + Delta-G solvation = -26388.901875 eV Core-core repulsion = 22430.458139 eV Total energy + Delta-G solvation = -3958.443736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.00934 -44.51364 -40.84180 -38.86880 -36.17736 -35.59192 -35.29184 -33.59044 -32.79866 -31.28927 -30.88957 -29.09489 -26.74579 -25.82539 -24.98353 -23.58692 -22.95990 -22.03061 -21.55972 -21.21813 -19.78911 -19.02510 -18.74943 -18.63647 -17.87583 -17.54531 -17.23763 -16.69784 -16.36357 -16.00783 -15.66961 -15.60436 -15.24950 -14.83281 -14.49744 -14.09554 -14.07798 -13.87782 -13.60232 -12.92816 -12.84893 -12.64715 -12.46626 -12.35030 -12.16353 -12.10870 -12.01525 -11.93683 -11.85048 -11.62701 -11.11968 -10.75006 -10.68032 -10.16560 -9.77847 -8.88707 -7.86850 -5.21624 -0.60037 0.72645 0.96796 1.06387 1.38881 1.43267 1.44188 1.54621 2.02042 2.24559 2.45865 2.47282 3.00411 3.09657 3.31381 3.34987 3.62958 3.64149 3.79357 4.00257 4.03935 4.14755 4.27844 4.35922 4.46838 4.63759 4.69830 4.73431 4.84509 4.91974 4.98882 5.03128 5.04716 5.41031 5.51224 5.64339 5.73677 6.17319 6.21486 6.53589 7.09355 7.10022 7.30537 7.74365 8.39163 9.23454 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003486 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.315625 B = 8030.594018 C = 8436.350257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.186 3.814 11 C -0.133 4.133 12 C 0.141 3.859 13 H 0.107 0.893 14 N -0.689 5.689 15 C 0.578 3.422 16 O -0.528 6.528 17 C -0.055 4.055 18 N -0.497 5.497 19 C 0.219 3.781 20 O -0.176 6.176 21 C 0.088 3.912 22 C 0.021 3.979 23 C -0.212 4.212 24 C -0.042 4.042 25 O 0.120 5.880 26 N -0.314 5.314 27 C 0.125 3.875 28 H 0.248 0.752 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.319 0.681 35 H 0.206 0.794 36 H 0.276 0.724 37 H 0.038 0.962 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 -19.026 -17.283 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.061 3.939 11 C -0.171 4.171 12 C 0.036 3.964 13 H 0.125 0.875 14 N -0.339 5.339 15 C 0.364 3.636 16 O -0.404 6.404 17 C -0.178 4.178 18 N -0.224 5.224 19 C -0.008 4.008 20 O -0.062 6.062 21 C 0.030 3.970 22 C -0.133 4.133 23 C -0.234 4.234 24 C -0.121 4.121 25 O 0.039 5.961 26 N -0.009 5.009 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.243 0.757 34 H 0.333 0.667 35 H 0.223 0.777 36 H 0.291 0.709 37 H 0.055 0.945 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.150 -18.500 -15.422 24.440 hybrid contribution 0.473 1.282 -1.137 1.778 sum 4.623 -17.218 -16.559 24.332 Atomic orbital electron populations 1.70167 1.05993 1.25220 1.58060 1.25569 0.96674 1.00646 1.02418 0.85036 0.77890 0.79591 0.76943 1.19702 1.21602 1.21529 1.19386 0.90652 0.83906 1.43353 0.91034 1.44720 1.02489 1.00540 1.87064 1.20936 0.83382 0.91318 0.98271 1.23085 0.96172 0.95699 1.02183 1.22043 0.96266 0.99364 0.78756 0.87532 1.45641 1.47938 1.33370 1.06908 1.17094 0.80028 0.81869 0.84630 1.90917 1.42277 1.36228 1.70977 1.21857 1.02960 0.97573 0.95436 1.70501 1.23672 1.24327 1.03919 1.29486 0.88478 0.85777 0.97048 1.84406 1.52348 1.41702 1.27707 1.19871 0.99024 0.96039 0.82042 1.20587 1.03133 0.98429 0.91144 1.23182 1.00524 0.96379 1.03339 1.27008 1.01598 1.02372 0.81152 1.84976 1.44760 1.34999 1.31331 1.75149 1.05670 0.99970 1.20148 1.22036 0.95015 0.85693 0.97391 0.94272 0.96512 0.96856 0.89262 0.88521 0.75745 0.66660 0.77654 0.70865 0.94468 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 10.31 21.65 0.22 -57.25 16 2 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 3 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.24 -14.42 10.28 84.03 0.86 -13.56 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -33.58 3.40 -692.00 -2.35 -35.93 16 10 C 0.19 9.30 5.36 86.73 0.47 9.76 16 11 C -0.13 -4.95 6.55 31.79 0.21 -4.74 16 12 C 0.14 5.49 3.43 46.38 0.16 5.65 16 13 H 0.11 3.89 7.54 -2.39 -0.02 3.87 16 14 N -0.69 -26.89 5.18 -439.30 -2.28 -29.17 16 15 C 0.58 22.78 7.81 86.64 0.68 23.45 16 16 O -0.53 -22.53 13.05 -4.10 -0.05 -22.59 16 17 C -0.06 -1.89 7.05 41.05 0.29 -1.60 16 18 N -0.50 -14.45 11.00 -304.13 -3.35 -17.80 16 19 C 0.22 3.93 13.16 130.51 1.72 5.65 16 20 O -0.18 -3.67 10.75 -4.20 -0.05 -3.72 16 21 C 0.09 2.55 7.37 24.83 0.18 2.74 16 22 C 0.02 0.58 7.12 42.81 0.30 0.89 16 23 C -0.21 -3.34 11.15 22.62 0.25 -3.09 16 24 C -0.04 -0.49 12.27 67.11 0.82 0.33 16 25 O 0.12 2.75 11.18 71.28 0.80 3.55 16 26 N -0.31 -9.93 8.71 -49.48 -0.43 -10.36 16 27 C 0.13 5.77 6.93 86.85 0.60 6.38 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.02 0.92 7.38 -2.39 -0.02 0.91 16 30 H 0.01 0.74 7.50 -2.39 -0.02 0.72 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.41 16.22 8.40 -92.71 -0.78 15.44 16 34 H 0.32 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.28 -0.32 8.06 -2.91 -0.02 -0.34 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -84.93 332.12 1.90 -83.03 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.35 Total: 12.10 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 7.01 Total: 28.82 kcal Atomic # 7 Polarization: -142.32 SS G_CDS: -8.18 Total: -150.50 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.70 Total: -22.76 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -84.93 1.90 -83.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016006733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.562 kcal (2) G-P(sol) polarization free energy of solvation -84.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds