Wall clock time and date at job start Tue Mar 31 2020 12:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.88579 * 31.11501 * 10 9 7 12 12 C 1.55150 * 111.00982 * 154.99761 * 10 9 7 13 13 C 1.54319 * 102.94588 * 153.57493 * 12 10 9 14 14 N 1.47018 * 107.27132 * 337.80878 * 13 12 10 15 15 C 1.34780 * 125.64937 * 178.89476 * 14 13 12 16 16 O 1.21574 * 119.99814 * 180.02562 * 15 14 13 17 17 C 1.47706 * 119.99823 * 0.02562 * 15 14 13 18 18 N 1.31803 * 126.52191 * 0.02562 * 17 15 14 19 19 N 1.28466 * 110.07544 * 180.02562 * 18 17 15 20 20 H 0.97000 * 124.88453 * 180.02562 * 19 18 17 21 21 C 1.35036 * 110.23021 * 359.97438 * 19 18 17 22 22 C 1.35360 * 107.22775 * 359.73034 * 21 19 18 23 23 C 1.50702 * 127.24833 * 180.25624 * 22 21 19 24 24 F 1.39904 * 109.47273 * 0.18870 * 23 22 21 25 25 F 1.39900 * 109.47220 * 120.18715 * 23 22 21 26 26 F 1.39895 * 109.47361 * 240.18592 * 23 22 21 27 27 C 1.47428 * 108.70352 * 358.93756 * 14 13 12 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.09007 * 110.72051 * 271.94262 * 12 10 9 31 31 H 1.09001 * 110.72250 * 35.21029 * 12 10 9 32 32 H 1.09009 * 109.88323 * 97.22509 * 13 12 10 33 33 H 1.08998 * 109.88801 * 218.23400 * 13 12 10 34 34 H 1.08001 * 126.38374 * 179.97438 * 21 19 18 35 35 H 1.08993 * 110.36761 * 265.29362 * 27 14 13 36 36 H 1.08999 * 110.36204 * 142.96511 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5517 -3.2432 -0.5256 12 6 5.5274 -2.2959 -0.6105 13 6 6.3371 -3.4233 0.0638 14 7 5.6362 -3.7814 1.3056 15 6 6.0145 -4.7420 2.1721 16 8 5.3552 -4.9529 3.1715 17 6 7.2300 -5.5384 1.9073 18 7 8.0357 -5.4190 0.8711 19 7 8.9942 -6.2699 0.9575 20 1 9.7093 -6.3678 0.3094 21 6 8.8639 -7.0077 2.0810 22 6 7.7544 -6.5703 2.7213 23 6 7.1933 -7.0784 4.0244 24 9 8.0068 -8.1062 4.5133 25 9 7.1530 -6.0335 4.9538 26 9 5.8991 -7.5671 3.8160 27 6 4.4506 -2.9165 1.4456 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 5.5001 -2.4340 -1.6914 31 1 5.9397 -1.3196 -0.3558 32 1 6.3876 -4.2893 -0.5963 33 1 7.3434 -3.0719 0.2915 34 1 9.5241 -7.7966 2.4095 35 1 4.6838 -2.0505 2.0650 36 1 3.6201 -3.4777 1.8738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018954293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:36 Heat of formation + Delta-G solvation = -79.132598 kcal Electronic energy + Delta-G solvation = -26897.327824 eV Core-core repulsion = 22390.320568 eV Total energy + Delta-G solvation = -4507.007256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05469 -47.64581 -47.43903 -43.29568 -39.62818 -37.36175 -34.31398 -32.92560 -32.12421 -31.33633 -29.89563 -27.98768 -26.32189 -25.00397 -23.15381 -22.22642 -21.68429 -20.35693 -19.77862 -18.83256 -18.39578 -18.20029 -17.77719 -17.09858 -16.89057 -16.42463 -15.85126 -15.26577 -14.48494 -14.47685 -14.37296 -14.19983 -13.97805 -13.88791 -13.70049 -13.64044 -13.56252 -13.12391 -12.73177 -12.58594 -12.52760 -12.41028 -11.89277 -11.40323 -11.22722 -10.88338 -10.76287 -10.48433 -10.12883 -10.07928 -10.06564 -9.96552 -9.63620 -9.04593 -8.42389 -7.38404 -5.81986 -3.20363 1.14832 1.20829 2.11310 2.70118 3.03185 3.22751 3.34303 3.37570 3.43278 3.59693 3.87698 4.13647 4.42285 4.45932 4.54241 4.58060 4.85485 5.00280 5.16442 5.22462 5.39030 5.46928 5.60153 5.75580 5.89884 5.91503 6.14991 6.27023 6.28108 6.45371 6.52926 6.75457 7.17501 7.62280 7.92365 8.18213 8.36443 9.12789 9.84542 10.02217 11.35662 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.003181 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.025990 B = 8798.839508 C = 9496.894683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.146 4.146 13 C 0.113 3.887 14 N -0.597 5.597 15 C 0.600 3.400 16 O -0.518 6.518 17 C 0.052 3.948 18 N -0.243 5.243 19 N -0.377 5.377 20 H 0.455 0.545 21 C 0.057 3.943 22 C -0.259 4.259 23 C 0.551 3.449 24 F -0.185 7.185 25 F -0.165 7.165 26 F -0.164 7.164 27 C 0.083 3.917 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.200 0.800 35 H 0.070 0.930 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.424 -15.618 1.364 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.111 0.889 9 N -0.376 5.376 10 C 0.065 3.935 11 H 0.096 0.904 12 C -0.185 4.185 13 C -0.011 4.011 14 N -0.330 5.330 15 C 0.384 3.616 16 O -0.392 6.392 17 C -0.112 4.112 18 N -0.077 5.077 19 N -0.089 5.089 20 H 0.301 0.699 21 C -0.090 4.090 22 C -0.272 4.272 23 C 0.495 3.505 24 F -0.166 7.166 25 F -0.147 7.147 26 F -0.146 7.146 27 C -0.042 4.042 28 H 0.071 0.929 29 H 0.198 0.802 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.217 0.783 35 H 0.088 0.912 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.901 -15.187 0.983 28.335 hybrid contribution 0.937 0.590 0.567 1.244 sum 24.837 -14.597 1.550 28.851 Atomic orbital electron populations 1.69704 1.05144 1.26005 1.56688 1.24684 0.95232 0.97276 1.01490 0.86565 0.79203 0.84928 0.77902 1.20917 1.20237 1.21633 1.19098 0.80251 0.94971 1.44012 0.88906 1.42646 1.04201 1.01488 1.89219 1.21286 0.90459 0.90111 0.91603 0.90446 1.23023 0.96887 0.97993 1.00618 1.22032 0.95733 0.98081 0.85218 1.48292 1.27959 1.34213 1.22548 1.16426 0.82553 0.79453 0.83127 1.90884 1.53636 1.67853 1.26808 1.21911 0.97944 0.98699 0.92623 1.73863 0.98837 1.12706 1.22303 1.43411 1.21577 1.24802 1.19101 0.69916 1.22692 0.98716 0.99088 0.88498 1.20313 1.01642 1.05343 0.99885 1.16941 0.75777 0.74919 0.82847 1.93155 1.73251 1.60808 1.89435 1.93246 1.96177 1.57634 1.67607 1.93251 1.38531 1.87916 1.94866 1.23439 0.85939 0.93027 1.01787 0.92895 0.80226 0.89918 0.90776 0.91084 0.91404 0.78288 0.91197 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.23 6.52 56.52 0.37 -5.87 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.25 -6.97 10.44 -15.06 -0.16 -7.13 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.73 -16.62 5.05 -51.35 -0.26 -16.88 16 10 C 0.18 3.25 3.71 -65.79 -0.24 3.01 16 11 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 12 C -0.15 -2.05 6.60 -24.90 -0.16 -2.21 16 13 C 0.11 1.45 5.54 -3.07 -0.02 1.43 16 14 N -0.60 -9.53 3.33 -171.68 -0.57 -10.10 16 15 C 0.60 10.05 7.86 -12.39 -0.10 9.95 16 16 O -0.52 -10.27 14.74 5.30 0.08 -10.19 16 17 C 0.05 0.68 6.98 -82.77 -0.58 0.10 16 18 N -0.24 -2.44 9.76 33.42 0.33 -2.11 16 19 N -0.38 -2.13 6.83 30.47 0.21 -1.92 16 20 H 0.45 0.50 8.96 -190.44 -1.71 -1.20 16 21 C 0.06 0.36 11.48 -17.17 -0.20 0.16 16 22 C -0.26 -2.90 5.66 -104.40 -0.59 -3.49 16 23 C 0.55 7.02 2.85 36.01 0.10 7.12 16 24 F -0.18 -1.91 16.87 2.25 0.04 -1.87 16 25 F -0.17 -2.46 16.42 2.25 0.04 -2.42 16 26 F -0.16 -2.46 16.40 2.25 0.04 -2.42 16 27 C 0.08 1.51 6.60 -2.53 -0.02 1.49 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.36 8.03 5.62 -40.82 -0.23 7.80 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.07 0.83 7.66 -51.92 -0.40 0.44 16 33 H 0.07 0.79 7.77 -51.93 -0.40 0.38 16 34 H 0.20 0.38 8.02 -52.49 -0.42 -0.04 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -35.28 319.88 -6.13 -41.41 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.85 Total: 2.28 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -2.06 Total: 10.61 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.48 Total: -59.05 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.11 Total: -6.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.28 -6.13 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018954293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds