Wall clock time and date at job start Tue Mar 31 2020 12:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.88579 * 31.11501 * 10 9 7 12 12 C 1.55150 * 111.00982 * 154.99761 * 10 9 7 13 13 C 1.54319 * 102.94588 * 153.57493 * 12 10 9 14 14 N 1.47018 * 107.27132 * 337.80878 * 13 12 10 15 15 C 1.34780 * 125.64937 * 178.89476 * 14 13 12 16 16 O 1.21574 * 119.99814 * 180.02562 * 15 14 13 17 17 C 1.47706 * 119.99823 * 0.02562 * 15 14 13 18 18 N 1.31803 * 126.52191 * 0.02562 * 17 15 14 19 19 N 1.28466 * 110.07544 * 180.02562 * 18 17 15 20 20 H 0.97000 * 124.88453 * 180.02562 * 19 18 17 21 21 C 1.35036 * 110.23021 * 359.97438 * 19 18 17 22 22 C 1.35360 * 107.22775 * 359.73034 * 21 19 18 23 23 C 1.50702 * 127.24833 * 180.25624 * 22 21 19 24 24 F 1.39904 * 109.47273 * 0.18870 * 23 22 21 25 25 F 1.39900 * 109.47220 * 120.18715 * 23 22 21 26 26 F 1.39895 * 109.47361 * 240.18592 * 23 22 21 27 27 C 1.47428 * 108.70352 * 358.93756 * 14 13 12 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.09007 * 110.72051 * 271.94262 * 12 10 9 31 31 H 1.09001 * 110.72250 * 35.21029 * 12 10 9 32 32 H 1.09009 * 109.88323 * 97.22509 * 13 12 10 33 33 H 1.08998 * 109.88801 * 218.23400 * 13 12 10 34 34 H 1.08001 * 126.38374 * 179.97438 * 21 19 18 35 35 H 1.08993 * 110.36761 * 265.29362 * 27 14 13 36 36 H 1.08999 * 110.36204 * 142.96511 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5517 -3.2432 -0.5256 12 6 5.5274 -2.2959 -0.6105 13 6 6.3371 -3.4233 0.0638 14 7 5.6362 -3.7814 1.3056 15 6 6.0145 -4.7420 2.1721 16 8 5.3552 -4.9529 3.1715 17 6 7.2300 -5.5384 1.9073 18 7 8.0357 -5.4190 0.8711 19 7 8.9942 -6.2699 0.9575 20 1 9.7093 -6.3678 0.3094 21 6 8.8639 -7.0077 2.0810 22 6 7.7544 -6.5703 2.7213 23 6 7.1933 -7.0784 4.0244 24 9 8.0068 -8.1062 4.5133 25 9 7.1530 -6.0335 4.9538 26 9 5.8991 -7.5671 3.8160 27 6 4.4506 -2.9165 1.4456 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 5.5001 -2.4340 -1.6914 31 1 5.9397 -1.3196 -0.3558 32 1 6.3876 -4.2893 -0.5963 33 1 7.3434 -3.0719 0.2915 34 1 9.5241 -7.7966 2.4095 35 1 4.6838 -2.0505 2.0650 36 1 3.6201 -3.4777 1.8738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018954293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:35 Heat of formation + Delta-G solvation = -106.074470 kcal Electronic energy + Delta-G solvation = -26898.496112 eV Core-core repulsion = 22390.320568 eV Total energy + Delta-G solvation = -4508.175544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.02996 -48.58205 -48.50683 -44.00066 -40.91431 -38.75743 -36.08432 -33.83172 -33.55386 -32.54421 -31.30059 -29.42922 -27.22410 -26.32281 -24.75777 -23.42051 -22.51205 -21.83711 -20.74569 -19.97145 -19.49573 -19.39960 -19.12619 -18.18760 -17.78747 -17.60701 -16.91431 -16.55995 -16.18798 -15.56222 -15.41797 -15.39110 -15.34675 -14.94527 -14.74789 -14.71016 -14.69931 -14.54336 -14.29337 -14.00485 -13.83808 -13.52071 -13.40119 -12.99293 -12.58634 -12.37403 -12.18574 -12.03743 -11.84744 -11.57443 -11.40723 -11.03786 -10.84172 -10.66319 -9.75821 -9.37417 -8.03183 -5.39903 0.20870 0.59978 1.39276 1.44085 1.47241 1.51178 1.72214 2.06268 2.07850 2.48948 2.71798 3.02368 3.23010 3.30055 3.47497 3.48976 3.72743 3.83268 3.89718 4.02550 4.22258 4.34488 4.37287 4.47773 4.58760 4.74118 4.88515 4.98078 5.12912 5.20979 5.32875 5.75432 5.87540 6.20184 6.37682 6.51941 6.94269 7.05323 7.77606 7.98401 9.17967 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.003181 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.025990 B = 8798.839508 C = 9496.894683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.241 1.241 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.735 5.735 10 C 0.170 3.830 11 H 0.065 0.935 12 C -0.131 4.131 13 C 0.119 3.881 14 N -0.599 5.599 15 C 0.592 3.408 16 O -0.564 6.564 17 C 0.020 3.980 18 N -0.238 5.238 19 N -0.347 5.347 20 H 0.478 0.522 21 C 0.100 3.900 22 C -0.291 4.291 23 C 0.546 3.454 24 F -0.170 7.170 25 F -0.185 7.185 26 F -0.185 7.185 27 C 0.091 3.909 28 H 0.259 0.741 29 H 0.371 0.629 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.062 0.938 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.285 -16.057 -0.201 33.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.165 1.165 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.378 5.378 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.169 4.169 13 C -0.003 4.003 14 N -0.332 5.332 15 C 0.379 3.621 16 O -0.442 6.442 17 C -0.142 4.142 18 N -0.074 5.074 19 N -0.063 5.063 20 H 0.330 0.670 21 C -0.048 4.048 22 C -0.304 4.304 23 C 0.491 3.509 24 F -0.151 7.151 25 F -0.166 7.166 26 F -0.167 7.167 27 C -0.035 4.035 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 28.866 -15.663 -0.633 32.847 hybrid contribution -0.508 0.527 1.069 1.296 sum 28.358 -15.136 0.436 32.147 Atomic orbital electron populations 1.69900 1.07363 1.26872 1.59112 1.25561 0.96116 1.01532 1.02082 0.85387 0.79054 0.79178 0.78023 1.20843 1.16473 1.22246 1.19025 0.82492 0.93514 1.42071 0.92727 1.42540 1.02462 1.03381 1.89369 1.21415 0.92737 0.88105 0.91806 0.91707 1.22970 0.93066 0.99124 1.01772 1.22188 0.96017 0.98315 0.83817 1.48322 1.27283 1.33894 1.23691 1.16996 0.83428 0.79328 0.82386 1.90845 1.55470 1.69141 1.28700 1.21324 0.97896 1.00087 0.94894 1.73738 0.99152 1.13513 1.20981 1.43527 1.20676 1.22956 1.19186 0.66966 1.23305 0.96660 0.98114 0.86705 1.20328 1.03860 1.06428 0.99767 1.17180 0.75324 0.74832 0.83559 1.93172 1.72493 1.60033 1.89396 1.93200 1.96244 1.58630 1.68550 1.93204 1.40310 1.88161 1.94997 1.23037 0.86364 0.92803 1.01279 0.93239 0.79420 0.87627 0.89673 0.89402 0.89152 0.73298 0.92001 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.30 13.97 21.65 0.30 -62.99 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 3 Si 0.96 44.55 27.74 68.60 1.90 46.45 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -13.60 10.44 84.03 0.88 -12.73 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 9 N -0.74 -33.10 5.05 -316.39 -1.60 -34.70 16 10 C 0.17 6.21 3.71 46.38 0.17 6.39 16 11 H 0.06 2.53 8.09 -2.38 -0.02 2.51 16 12 C -0.13 -3.28 6.60 31.78 0.21 -3.07 16 13 C 0.12 2.71 5.54 86.73 0.48 3.19 16 14 N -0.60 -19.02 3.33 -815.35 -2.71 -21.73 16 15 C 0.59 20.12 7.86 86.74 0.68 20.80 16 16 O -0.56 -23.69 14.74 -3.95 -0.06 -23.75 16 17 C 0.02 0.49 6.98 42.46 0.30 0.78 16 18 N -0.24 -3.91 9.76 -48.18 -0.47 -4.38 16 19 N -0.35 -2.14 6.83 -57.51 -0.39 -2.54 16 20 H 0.48 -1.83 8.96 -219.99 -1.97 -3.80 16 21 C 0.10 0.76 11.48 83.54 0.96 1.72 16 22 C -0.29 -5.91 5.66 -19.72 -0.11 -6.03 16 23 C 0.55 13.71 2.85 71.24 0.20 13.91 16 24 F -0.17 -3.19 16.87 44.97 0.76 -2.43 16 25 F -0.18 -5.65 16.42 44.97 0.74 -4.91 16 26 F -0.19 -5.74 16.40 44.97 0.74 -5.01 16 27 C 0.09 3.44 6.60 86.86 0.57 4.01 16 28 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.37 15.62 5.62 -92.71 -0.52 15.10 16 30 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.08 2.01 8.00 -2.39 -0.02 1.99 16 32 H 0.09 1.76 7.66 -2.38 -0.02 1.74 16 33 H 0.09 1.73 7.77 -2.39 -0.02 1.71 16 34 H 0.25 -0.74 8.02 -2.91 -0.02 -0.76 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -83.82 319.88 2.64 -81.18 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -1.38 Total: 8.95 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 4.81 Total: 25.85 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -4.87 Total: -126.33 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 2.24 Total: -12.35 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -83.82 2.64 -81.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018954293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.893 kcal (2) G-P(sol) polarization free energy of solvation -83.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds