Wall clock time and date at job start Tue Mar 31 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85121 * 336.19098 * 10 9 7 12 12 C 1.53787 * 113.61790 * 107.49804 * 10 9 7 13 13 C 1.53781 * 87.07889 * 89.11714 * 12 10 9 14 14 H 1.09008 * 113.69045 * 270.87461 * 13 12 10 15 15 N 1.46496 * 113.61328 * 139.98400 * 13 12 10 16 16 C 1.34778 * 119.99966 * 107.50047 * 15 13 12 17 17 O 1.21567 * 120.00274 * 0.02562 * 16 15 13 18 18 C 1.47714 * 120.00219 * 179.97438 * 16 15 13 19 19 N 1.31807 * 126.51203 * 0.02564 * 18 16 15 20 20 N 1.28476 * 110.07082 * 179.97438 * 19 18 16 21 21 H 0.96999 * 124.88432 * 179.97438 * 20 19 18 22 22 C 1.35031 * 110.23040 * 0.02562 * 20 19 18 23 23 C 1.35373 * 107.22905 * 359.72033 * 22 20 19 24 24 C 1.50698 * 127.25280 * 180.26285 * 23 22 20 25 25 F 1.39901 * 109.46654 * 0.18810 * 24 23 22 26 26 F 1.39895 * 109.47427 * 120.18323 * 24 23 22 27 27 F 1.39893 * 109.47107 * 240.18822 * 24 23 22 28 28 C 1.53777 * 87.08241 * 25.43164 * 13 12 10 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.61380 * 203.66388 * 12 10 9 32 32 H 1.09000 * 113.61264 * 334.56754 * 12 10 9 33 33 H 0.96999 * 120.00316 * 287.49404 * 15 13 12 34 34 H 1.07995 * 126.38851 * 180.02562 * 22 20 19 35 35 H 1.09004 * 113.61866 * 220.01498 * 28 13 12 36 36 H 1.09006 * 113.69115 * 89.13048 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0658 -3.5637 -0.4063 12 6 1.9981 -4.4028 1.3419 13 6 0.7198 -5.0795 0.8194 14 1 -0.1919 -4.5255 1.0434 15 7 0.6230 -6.4991 1.1678 16 6 -0.2570 -6.9046 2.1047 17 8 -0.9707 -6.0923 2.6604 18 6 -0.3551 -8.3361 2.4557 19 7 0.3512 -9.3208 1.9373 20 7 0.0095 -10.4377 2.4723 21 1 0.3929 -11.3002 2.2488 22 6 -0.9611 -10.2384 3.3896 23 6 -1.2209 -8.9101 3.4164 24 6 -2.2234 -8.1940 4.2842 25 9 -2.8799 -9.1212 5.1006 26 9 -1.5622 -7.2551 5.0832 27 9 -3.1588 -7.5410 3.4745 28 6 1.2605 -4.8285 -0.5981 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.8268 -5.0941 1.4947 32 1 1.8277 -3.7489 2.1972 33 1 1.1920 -7.1473 0.7242 34 1 -1.4375 -10.9966 3.9934 35 1 0.4946 -4.5184 -1.3091 36 1 1.8876 -5.6356 -0.9770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020227982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:25 Heat of formation + Delta-G solvation = -71.711423 kcal Electronic energy + Delta-G solvation = -26484.773183 eV Core-core repulsion = 21978.087733 eV Total energy + Delta-G solvation = -4506.685450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.07500 -47.66605 -47.45889 -43.36537 -39.76478 -37.99750 -34.29432 -33.11124 -32.85614 -31.62264 -29.38779 -26.41634 -25.29033 -25.17208 -23.61480 -22.64456 -21.68525 -20.45315 -19.62855 -18.82762 -18.41497 -18.21928 -17.48793 -17.31946 -17.02806 -16.30951 -16.02811 -15.02145 -14.54816 -14.49995 -14.42975 -14.38187 -14.07828 -13.95938 -13.71081 -13.65730 -13.60729 -13.52873 -12.82924 -12.62949 -12.21537 -12.05761 -11.60392 -11.52039 -10.76568 -10.65166 -10.31268 -10.15460 -10.13791 -10.06958 -9.93771 -9.89174 -9.16529 -8.91037 -8.76539 -7.05125 -6.08981 -3.10212 1.06168 1.14121 2.04898 2.67506 3.10407 3.15808 3.54077 3.55260 3.58048 3.75592 3.83680 4.15850 4.36619 4.43343 4.63414 4.67568 4.96286 5.02924 5.17558 5.31227 5.36750 5.50205 5.83906 5.85085 6.04332 6.12903 6.21108 6.28938 6.54655 6.62881 6.71581 6.94303 7.06558 7.57159 7.83229 8.17709 8.76299 9.22305 10.08494 10.22070 11.38867 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002888 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.565666 B = 9693.978655 C =10547.813002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.717 5.717 10 C 0.177 3.823 11 H 0.070 0.930 12 C -0.183 4.183 13 C 0.125 3.875 14 H 0.115 0.885 15 N -0.698 5.698 16 C 0.588 3.412 17 O -0.510 6.510 18 C 0.047 3.953 19 N -0.249 5.249 20 N -0.375 5.375 21 H 0.455 0.545 22 C 0.058 3.942 23 C -0.258 4.258 24 C 0.550 3.450 25 F -0.185 7.185 26 F -0.164 7.164 27 F -0.164 7.164 28 C -0.164 4.164 29 H 0.256 0.744 30 H 0.369 0.631 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.201 0.799 35 H 0.073 0.927 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -27.989 5.898 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.241 4.241 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.356 5.356 10 C 0.064 3.936 11 H 0.088 0.912 12 C -0.225 4.225 13 C 0.021 3.979 14 H 0.133 0.867 15 N -0.348 5.348 16 C 0.370 3.630 17 O -0.383 6.383 18 C -0.117 4.117 19 N -0.083 5.083 20 N -0.087 5.087 21 H 0.302 0.698 22 C -0.089 4.089 23 C -0.271 4.271 24 C 0.495 3.505 25 F -0.166 7.166 26 F -0.145 7.145 27 F -0.146 7.146 28 C -0.204 4.204 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.218 0.782 35 H 0.091 0.909 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.101 -25.808 5.505 26.389 hybrid contribution -0.378 -2.549 0.506 2.626 sum -0.479 -28.357 6.010 28.991 Atomic orbital electron populations 1.70878 1.06056 1.28593 1.52936 1.25823 0.97042 1.01091 1.00120 0.83228 0.74206 0.75524 0.75845 1.21015 1.22202 1.22230 1.20061 0.92099 0.85572 1.49089 0.91517 1.42201 1.04810 1.00385 1.88238 1.20831 0.95264 0.84926 0.92572 0.91159 1.24322 0.96132 0.99702 1.02362 1.22745 0.99996 0.78934 0.96204 0.86720 1.45932 1.39032 1.10278 1.39586 1.16878 0.81181 0.84243 0.80667 1.90909 1.42974 1.52434 1.51970 1.22026 0.97033 0.94803 0.97812 1.73687 1.22385 0.91385 1.20847 1.43331 1.28043 1.09184 1.28117 0.69849 1.22715 0.93677 0.96924 0.95608 1.20347 1.06043 0.94435 1.06226 1.16939 0.79212 0.76632 0.77758 1.93157 1.82652 1.66250 1.74546 1.93257 1.80502 1.66231 1.74535 1.93253 1.66627 1.81918 1.72760 1.23920 1.00775 1.00080 0.95631 0.93255 0.79689 0.91017 0.90896 0.76234 0.78169 0.90870 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.55 13.70 55.49 0.76 -28.79 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 26.18 29.92 -169.99 -5.09 21.09 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -9.56 9.97 -15.06 -0.15 -9.71 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -18.11 5.31 -52.64 -0.28 -18.39 16 10 C 0.18 3.52 4.56 -67.12 -0.31 3.21 16 11 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.18 -3.28 7.68 -25.92 -0.20 -3.48 16 13 C 0.12 2.10 4.12 -67.12 -0.28 1.82 16 14 H 0.11 2.28 7.46 -51.92 -0.39 1.89 16 15 N -0.70 -9.89 5.35 -54.00 -0.29 -10.18 16 16 C 0.59 9.26 7.82 -12.39 -0.10 9.17 16 17 O -0.51 -9.95 14.08 5.31 0.07 -9.87 16 18 C 0.05 0.58 7.13 -82.77 -0.59 -0.01 16 19 N -0.25 -2.34 11.92 33.42 0.40 -1.94 16 20 N -0.37 -1.96 6.83 30.47 0.21 -1.75 16 21 H 0.46 0.31 8.96 -190.44 -1.71 -1.39 16 22 C 0.06 0.35 11.48 -17.17 -0.20 0.15 16 23 C -0.26 -2.82 5.66 -104.40 -0.59 -3.42 16 24 C 0.55 7.04 2.85 36.00 0.10 7.14 16 25 F -0.18 -1.92 16.87 2.25 0.04 -1.88 16 26 F -0.16 -2.49 16.42 2.25 0.04 -2.45 16 27 F -0.16 -2.47 16.40 2.25 0.04 -2.43 16 28 C -0.16 -2.62 7.58 -25.92 -0.20 -2.82 16 29 H 0.26 7.97 6.77 -40.82 -0.28 7.69 16 30 H 0.37 9.70 6.73 -40.82 -0.27 9.43 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.40 4.62 8.45 -40.82 -0.35 4.28 16 34 H 0.20 0.34 8.02 -52.49 -0.42 -0.08 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -36.45 327.36 -6.49 -42.94 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.73 Total: 8.01 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.60 Total: 0.71 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.80 Total: -61.05 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.45 -6.49 -42.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020227982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.767 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds