Wall clock time and date at job start Tue Mar 31 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85121 * 336.19098 * 10 9 7 12 12 C 1.53787 * 113.61790 * 107.49804 * 10 9 7 13 13 C 1.53781 * 87.07889 * 89.11714 * 12 10 9 14 14 H 1.09008 * 113.69045 * 270.87461 * 13 12 10 15 15 N 1.46496 * 113.61328 * 139.98400 * 13 12 10 16 16 C 1.34778 * 119.99966 * 107.50047 * 15 13 12 17 17 O 1.21567 * 120.00274 * 0.02562 * 16 15 13 18 18 C 1.47714 * 120.00219 * 179.97438 * 16 15 13 19 19 N 1.31807 * 126.51203 * 0.02564 * 18 16 15 20 20 N 1.28476 * 110.07082 * 179.97438 * 19 18 16 21 21 H 0.96999 * 124.88432 * 179.97438 * 20 19 18 22 22 C 1.35031 * 110.23040 * 0.02562 * 20 19 18 23 23 C 1.35373 * 107.22905 * 359.72033 * 22 20 19 24 24 C 1.50698 * 127.25280 * 180.26285 * 23 22 20 25 25 F 1.39901 * 109.46654 * 0.18810 * 24 23 22 26 26 F 1.39895 * 109.47427 * 120.18323 * 24 23 22 27 27 F 1.39893 * 109.47107 * 240.18822 * 24 23 22 28 28 C 1.53777 * 87.08241 * 25.43164 * 13 12 10 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.61380 * 203.66388 * 12 10 9 32 32 H 1.09000 * 113.61264 * 334.56754 * 12 10 9 33 33 H 0.96999 * 120.00316 * 287.49404 * 15 13 12 34 34 H 1.07995 * 126.38851 * 180.02562 * 22 20 19 35 35 H 1.09004 * 113.61866 * 220.01498 * 28 13 12 36 36 H 1.09006 * 113.69115 * 89.13048 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0658 -3.5637 -0.4063 12 6 1.9981 -4.4028 1.3419 13 6 0.7198 -5.0795 0.8194 14 1 -0.1919 -4.5255 1.0434 15 7 0.6230 -6.4991 1.1678 16 6 -0.2570 -6.9046 2.1047 17 8 -0.9707 -6.0923 2.6604 18 6 -0.3551 -8.3361 2.4557 19 7 0.3512 -9.3208 1.9373 20 7 0.0095 -10.4377 2.4723 21 1 0.3929 -11.3002 2.2488 22 6 -0.9611 -10.2384 3.3896 23 6 -1.2209 -8.9101 3.4164 24 6 -2.2234 -8.1940 4.2842 25 9 -2.8799 -9.1212 5.1006 26 9 -1.5622 -7.2551 5.0832 27 9 -3.1588 -7.5410 3.4745 28 6 1.2605 -4.8285 -0.5981 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.8268 -5.0941 1.4947 32 1 1.8277 -3.7489 2.1972 33 1 1.1920 -7.1473 0.7242 34 1 -1.4375 -10.9966 3.9934 35 1 0.4946 -4.5184 -1.3091 36 1 1.8876 -5.6356 -0.9770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020227982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:25 Heat of formation + Delta-G solvation = -100.377235 kcal Electronic energy + Delta-G solvation = -26486.016226 eV Core-core repulsion = 21978.087733 eV Total energy + Delta-G solvation = -4507.928493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.06219 -48.61482 -48.54103 -44.04053 -41.09427 -39.43636 -36.08464 -34.56221 -33.69240 -32.47741 -31.30357 -27.31949 -26.62374 -26.52384 -25.49034 -24.02126 -22.50258 -21.57663 -20.62679 -20.03915 -19.51003 -19.43002 -19.15494 -18.33735 -17.82163 -17.47953 -17.05799 -16.75670 -15.91891 -15.72882 -15.54862 -15.45064 -15.41403 -15.39829 -14.97728 -14.73625 -14.73144 -14.54445 -14.46813 -13.76310 -13.52088 -13.41629 -13.14968 -12.67378 -12.58258 -12.33199 -11.88909 -11.87136 -11.52557 -11.45036 -11.16152 -10.89389 -10.87870 -10.72780 -10.09758 -9.14377 -8.40209 -5.35045 0.16122 0.55043 1.45189 1.58795 1.69684 1.78623 1.85651 2.03808 2.12577 2.68776 2.71859 2.98828 3.35787 3.37492 3.44004 3.52599 3.67439 3.76698 3.76901 3.92699 4.17735 4.19472 4.33883 4.56286 4.69013 4.74146 4.89704 5.03097 5.12519 5.19222 5.50192 5.63984 5.81333 6.30179 6.46783 6.55960 7.04558 7.07532 7.97016 8.09002 9.11003 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002888 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.565666 B = 9693.978655 C =10547.813002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.108 4.108 3 Si 1.130 2.870 4 H -0.295 1.295 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.074 0.926 9 N -0.735 5.735 10 C 0.156 3.844 11 H 0.078 0.922 12 C -0.170 4.170 13 C 0.131 3.869 14 H 0.075 0.925 15 N -0.684 5.684 16 C 0.582 3.418 17 O -0.561 6.561 18 C 0.016 3.984 19 N -0.242 5.242 20 N -0.346 5.346 21 H 0.479 0.521 22 C 0.100 3.900 23 C -0.292 4.292 24 C 0.545 3.455 25 F -0.170 7.170 26 F -0.186 7.186 27 F -0.185 7.185 28 C -0.137 4.137 29 H 0.242 0.758 30 H 0.358 0.642 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.420 0.580 34 H 0.251 0.749 35 H 0.063 0.937 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -31.604 5.570 32.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.298 4.298 3 Si 0.955 3.045 4 H -0.222 1.222 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.374 5.374 10 C 0.045 3.955 11 H 0.097 0.903 12 C -0.212 4.212 13 C 0.026 3.974 14 H 0.093 0.907 15 N -0.335 5.335 16 C 0.367 3.633 17 O -0.437 6.437 18 C -0.146 4.146 19 N -0.078 5.078 20 N -0.062 5.062 21 H 0.331 0.669 22 C -0.048 4.048 23 C -0.304 4.304 24 C 0.490 3.510 25 F -0.151 7.151 26 F -0.167 7.167 27 F -0.167 7.167 28 C -0.176 4.176 29 H 0.052 0.948 30 H 0.190 0.810 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.926 -29.544 5.148 30.051 hybrid contribution -0.955 -1.643 0.656 2.010 sum 0.971 -31.186 5.804 31.737 Atomic orbital electron populations 1.70995 1.07353 1.27805 1.56210 1.27314 0.97070 1.04971 1.00475 0.82607 0.73331 0.71327 0.77275 1.22153 1.20460 1.19804 1.20463 0.92607 0.86786 1.46659 0.90834 1.42411 1.04536 1.01721 1.88774 1.21163 0.95729 0.84167 0.94394 0.90348 1.24183 0.97874 0.99471 0.99643 1.22309 0.97891 0.80248 0.96927 0.90664 1.45674 1.39138 1.09251 1.39418 1.17377 0.80320 0.85694 0.79946 1.90881 1.44801 1.54334 1.53653 1.21482 0.99512 0.93563 1.00051 1.73601 1.21696 0.91885 1.20628 1.43463 1.26949 1.09133 1.26650 0.66930 1.23315 0.91781 0.95675 0.94059 1.20350 1.06705 0.96384 1.06998 1.17207 0.79411 0.76526 0.77866 1.93171 1.82456 1.65308 1.74178 1.93206 1.80904 1.67381 1.75202 1.93204 1.67523 1.82574 1.73349 1.23752 1.00135 0.99181 0.94542 0.94777 0.80966 0.87532 0.94607 0.74221 0.73290 0.91807 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.67 13.70 21.65 0.30 -63.37 16 2 C -0.11 -6.44 5.50 84.86 0.47 -5.97 16 3 Si 1.13 53.21 29.92 68.60 2.05 55.27 16 4 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.33 -19.20 9.97 84.03 0.84 -18.36 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -38.25 5.31 -320.46 -1.70 -39.95 16 10 C 0.16 6.14 4.56 45.52 0.21 6.35 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.17 -6.08 7.68 31.12 0.24 -5.84 16 13 C 0.13 4.47 4.12 45.52 0.19 4.66 16 14 H 0.08 3.22 7.46 -2.38 -0.02 3.20 16 15 N -0.68 -18.91 5.35 -443.04 -2.37 -21.28 16 16 C 0.58 18.64 7.82 86.75 0.68 19.32 16 17 O -0.56 -23.24 14.08 -3.93 -0.06 -23.29 16 18 C 0.02 0.38 7.13 42.46 0.30 0.68 16 19 N -0.24 -3.79 11.92 -48.18 -0.57 -4.36 16 20 N -0.35 -2.03 6.83 -57.51 -0.39 -2.43 16 21 H 0.48 -1.96 8.96 -219.99 -1.97 -3.93 16 22 C 0.10 0.75 11.48 83.54 0.96 1.71 16 23 C -0.29 -5.91 5.66 -19.72 -0.11 -6.02 16 24 C 0.55 13.98 2.85 71.24 0.20 14.18 16 25 F -0.17 -3.30 16.87 44.97 0.76 -2.54 16 26 F -0.19 -5.88 16.42 44.97 0.74 -5.14 16 27 F -0.19 -5.82 16.40 44.97 0.74 -5.09 16 28 C -0.14 -4.18 7.58 31.12 0.24 -3.94 16 29 H 0.24 15.90 6.77 -92.71 -0.63 15.27 16 30 H 0.36 19.91 6.73 -92.71 -0.62 19.29 16 31 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 8.61 8.45 -92.71 -0.78 7.82 16 34 H 0.25 -0.71 8.02 -2.91 -0.02 -0.73 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.13 2.76 8.12 -2.38 -0.02 2.74 16 Total: -1.00 -85.92 327.36 1.65 -84.27 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -2.05 Total: 21.15 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.21 Total: 6.77 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -4.74 Total: -131.39 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 2.23 Total: -12.77 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 2.05 Total: 55.27 kcal Total: -85.92 1.65 -84.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020227982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.106 kcal (2) G-P(sol) polarization free energy of solvation -85.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds