Wall clock time and date at job start Tue Mar 31 2020 11:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48498 * 109.46740 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47150 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.47206 * 149.99700 * 3 2 1 7 7 C 1.38817 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99602 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84976 * 23.80375 * 10 9 7 12 12 C 1.53778 * 113.61404 * 155.00061 * 10 9 7 13 13 C 1.53779 * 87.08049 * 89.11531 * 12 10 9 14 14 H 1.09004 * 113.61541 * 270.79560 * 13 12 10 15 15 N 1.46499 * 113.61554 * 139.98512 * 13 12 10 16 16 C 1.34776 * 120.00284 * 154.99872 * 15 13 12 17 17 O 1.21527 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.48052 * 119.99728 * 179.97438 * 16 15 13 19 19 C 1.39526 * 119.46519 * 179.97438 * 18 16 15 20 20 C 1.38458 * 119.39065 * 180.02562 * 19 18 16 21 21 C 1.38658 * 118.36380 * 359.97438 * 20 19 18 22 22 O 1.35041 * 134.03032 * 180.02562 * 21 20 19 23 23 C 1.34384 * 108.12940 * 179.97438 * 22 21 20 24 24 O 1.35085 * 124.89130 * 179.97438 * 23 22 21 25 25 N 1.30709 * 110.21812 * 359.97438 * 23 22 21 26 26 C 1.36031 * 108.82832 * 359.97438 * 25 23 22 27 27 N 1.32524 * 133.38456 * 180.02562 * 26 25 23 28 28 C 1.53780 * 87.08270 * 25.43222 * 13 12 10 29 29 H 0.96999 * 119.99615 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00277 * 359.97438 * 9 7 2 31 31 H 1.09000 * 113.61367 * 334.56795 * 12 10 9 32 32 H 1.08998 * 113.69117 * 203.67790 * 12 10 9 33 33 H 0.97006 * 119.99477 * 334.99398 * 15 13 12 34 34 H 1.07997 * 120.30345 * 359.97438 * 19 18 16 35 35 H 1.08007 * 120.81583 * 180.02562 * 20 19 18 36 36 H 0.96700 * 114.00267 * 179.97438 * 24 23 22 37 37 H 1.08994 * 113.61509 * 89.11569 * 28 13 12 38 38 H 1.09004 * 113.61286 * 220.01946 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4059 12 6 1.2601 -4.8288 0.5960 13 6 0.7204 -5.0791 -0.8221 14 1 -0.1912 -4.5251 -1.0464 15 7 0.6237 -6.4986 -1.1712 16 6 -0.2556 -6.9036 -2.1088 17 8 -0.9686 -6.0914 -2.6645 18 6 -0.3528 -8.3381 -2.4620 19 6 -1.2673 -8.7452 -3.4339 20 6 -1.3573 -10.0872 -3.7625 21 6 -0.5266 -10.9831 -3.1069 22 8 -0.3497 -12.3202 -3.1732 23 6 0.6080 -12.6595 -2.2936 24 8 1.0525 -13.9174 -2.0821 25 7 1.0475 -11.5968 -1.6722 26 6 0.3771 -10.5080 -2.1364 27 7 0.4328 -9.2150 -1.8515 28 6 1.9990 -4.4022 -1.3433 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.4937 -4.5189 1.3065 32 1 1.8857 -5.6373 0.9741 33 1 1.1926 -7.1469 -0.7274 34 1 -1.8997 -8.0203 -3.9247 35 1 -2.0568 -10.4277 -4.5118 36 1 1.7470 -13.9818 -1.4124 37 1 2.8278 -5.0933 -1.4960 38 1 1.8292 -3.7479 -2.1984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020923204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:29 Heat of formation + Delta-G solvation = 30.414117 kcal Electronic energy + Delta-G solvation = -24984.966982 eV Core-core repulsion = 21024.566768 eV Total energy + Delta-G solvation = -3960.400214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -44.01506 -40.50645 -39.28130 -38.65408 -37.75346 -35.24972 -34.14713 -33.08399 -32.28894 -30.44725 -29.61457 -25.99300 -25.07668 -24.47818 -23.96384 -23.02717 -22.73574 -21.08797 -19.88250 -19.47626 -18.62226 -17.99997 -17.99178 -17.57352 -17.30949 -16.05653 -15.50245 -15.25730 -14.99299 -14.80850 -14.44021 -14.33341 -13.97610 -13.95960 -13.64345 -13.61262 -13.04736 -12.67768 -12.11624 -11.95669 -11.74000 -11.68781 -11.63014 -10.85810 -10.80673 -10.42443 -10.24550 -10.14603 -10.08899 -9.93976 -9.69344 -9.62203 -9.14943 -8.89568 -8.70168 -6.98441 -5.77170 -3.07026 0.05511 0.10377 0.85357 1.68074 2.42136 2.51604 3.11631 3.44796 3.45394 3.49832 3.51634 3.52827 3.74520 4.27978 4.41741 4.55730 4.58254 4.75466 4.90758 5.08417 5.25928 5.26691 5.37968 5.43498 5.49610 5.66448 5.90148 6.00105 6.14636 6.16693 6.22200 6.39460 6.62161 6.74320 6.75877 6.79365 7.03142 7.15920 7.63955 7.71869 8.20535 8.41130 9.51925 10.08272 10.42435 11.45005 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.034914 B = 0.002183 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.783595 B =12821.681667 C =13386.026523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.163 4.163 13 C 0.121 3.879 14 H 0.117 0.883 15 N -0.691 5.691 16 C 0.568 3.432 17 O -0.523 6.523 18 C 0.122 3.878 19 C -0.103 4.103 20 C -0.033 4.033 21 C -0.037 4.037 22 O -0.195 6.195 23 C 0.477 3.523 24 O -0.408 6.408 25 N -0.509 5.509 26 C 0.262 3.738 27 N -0.417 5.417 28 C -0.183 4.183 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.408 0.592 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.447 0.553 37 H 0.071 0.929 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -29.018 -5.527 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.203 4.203 13 C 0.018 3.982 14 H 0.135 0.865 15 N -0.341 5.341 16 C 0.351 3.649 17 O -0.399 6.399 18 C -0.025 4.025 19 C -0.124 4.124 20 C -0.060 4.060 21 C -0.090 4.090 22 O -0.088 6.088 23 C 0.225 3.775 24 O -0.209 6.209 25 N -0.262 5.262 26 C 0.021 3.979 27 N -0.133 5.133 28 C -0.225 4.225 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.190 0.810 35 H 0.176 0.824 36 H 0.308 0.692 37 H 0.089 0.911 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.045 -28.272 -5.234 28.752 hybrid contribution -0.203 -0.149 -0.576 0.629 sum -0.248 -28.421 -5.810 29.010 Atomic orbital electron populations 1.69669 1.05128 1.25819 1.57163 1.24786 0.95546 0.97825 1.02673 0.86161 0.78620 0.83680 0.77529 1.21669 1.21777 1.20706 1.19272 0.91115 0.83891 1.43246 0.90915 1.42203 1.05775 0.99402 1.87005 1.20910 0.95327 0.85380 0.92532 0.91253 1.23904 1.00827 0.99991 0.95613 1.22802 1.00103 0.78911 0.96415 0.86537 1.46040 1.38614 1.10423 1.38986 1.17656 0.81182 0.85308 0.80793 1.90851 1.43613 1.52728 1.52663 1.21407 0.93060 0.93872 0.94180 1.22025 0.98544 0.94949 0.96857 1.20376 0.96989 0.89818 0.98778 1.21103 1.03634 0.80616 1.03605 1.84375 1.48818 1.23021 1.52553 1.22272 0.84359 0.86523 0.84338 1.84678 1.57806 1.16079 1.62367 1.71094 1.29673 0.96121 1.29277 1.19699 0.93436 0.91109 0.93609 1.66666 1.22273 0.99323 1.25018 1.24324 0.96093 0.99700 1.02408 0.93392 0.77959 0.90720 0.90100 0.75571 0.80987 0.82370 0.69184 0.91085 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.60 5.31 -52.64 -0.28 -17.88 16 10 C 0.17 3.36 4.56 -67.12 -0.31 3.05 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.16 -2.63 7.58 -25.92 -0.20 -2.82 16 13 C 0.12 2.02 4.12 -67.12 -0.28 1.75 16 14 H 0.12 2.27 7.46 -51.93 -0.39 1.88 16 15 N -0.69 -9.91 5.34 -53.89 -0.29 -10.19 16 16 C 0.57 8.46 7.81 -12.24 -0.10 8.36 16 17 O -0.52 -9.35 15.89 5.34 0.08 -9.27 16 18 C 0.12 1.50 6.74 -83.02 -0.56 0.94 16 19 C -0.10 -0.97 9.61 -39.02 -0.38 -1.34 16 20 C -0.03 -0.25 10.17 -39.35 -0.40 -0.65 16 21 C -0.04 -0.36 7.44 -38.44 -0.29 -0.64 16 22 O -0.19 -1.75 10.78 -19.88 -0.21 -1.96 16 23 C 0.48 3.74 9.53 52.28 0.50 4.24 16 24 O -0.41 -1.59 13.62 -40.26 -0.55 -2.14 16 25 N -0.51 -5.23 11.37 -14.31 -0.16 -5.39 16 26 C 0.26 3.06 8.38 -157.08 -1.32 1.75 16 27 N -0.42 -5.27 9.57 -9.24 -0.09 -5.35 16 28 C -0.18 -3.24 7.68 -25.92 -0.20 -3.43 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.28 7.90 -40.82 -0.32 9.95 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 33 H 0.41 5.15 8.04 -40.82 -0.33 4.82 16 34 H 0.17 1.41 7.61 -52.49 -0.40 1.01 16 35 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.45 -0.57 9.06 45.56 0.41 -0.16 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -35.06 339.80 -7.54 -42.60 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -3.10 Total: 10.72 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.76 Total: 3.83 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.09 Total: -66.27 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.68 Total: -13.37 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.06 -7.54 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020923204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.014 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds