Wall clock time and date at job start Tue Mar 31 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48498 * 109.46740 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47150 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.47206 * 149.99700 * 3 2 1 7 7 C 1.38817 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99561 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99602 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84976 * 23.80375 * 10 9 7 12 12 C 1.53778 * 113.61404 * 155.00061 * 10 9 7 13 13 C 1.53779 * 87.08049 * 89.11531 * 12 10 9 14 14 H 1.09004 * 113.61541 * 270.79560 * 13 12 10 15 15 N 1.46499 * 113.61554 * 139.98512 * 13 12 10 16 16 C 1.34776 * 120.00284 * 154.99872 * 15 13 12 17 17 O 1.21527 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.48052 * 119.99728 * 179.97438 * 16 15 13 19 19 C 1.39526 * 119.46519 * 179.97438 * 18 16 15 20 20 C 1.38458 * 119.39065 * 180.02562 * 19 18 16 21 21 C 1.38658 * 118.36380 * 359.97438 * 20 19 18 22 22 O 1.35041 * 134.03032 * 180.02562 * 21 20 19 23 23 C 1.34384 * 108.12940 * 179.97438 * 22 21 20 24 24 O 1.35085 * 124.89130 * 179.97438 * 23 22 21 25 25 N 1.30709 * 110.21812 * 359.97438 * 23 22 21 26 26 C 1.36031 * 108.82832 * 359.97438 * 25 23 22 27 27 N 1.32524 * 133.38456 * 180.02562 * 26 25 23 28 28 C 1.53780 * 87.08270 * 25.43222 * 13 12 10 29 29 H 0.96999 * 119.99615 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00277 * 359.97438 * 9 7 2 31 31 H 1.09000 * 113.61367 * 334.56795 * 12 10 9 32 32 H 1.08998 * 113.69117 * 203.67790 * 12 10 9 33 33 H 0.97006 * 119.99477 * 334.99398 * 15 13 12 34 34 H 1.07997 * 120.30345 * 359.97438 * 19 18 16 35 35 H 1.08007 * 120.81583 * 180.02562 * 20 19 18 36 36 H 0.96700 * 114.00267 * 179.97438 * 24 23 22 37 37 H 1.08994 * 113.61509 * 89.11569 * 28 13 12 38 38 H 1.09004 * 113.61286 * 220.01946 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0655 -3.5639 0.4059 12 6 1.2601 -4.8288 0.5960 13 6 0.7204 -5.0791 -0.8221 14 1 -0.1912 -4.5251 -1.0464 15 7 0.6237 -6.4986 -1.1712 16 6 -0.2556 -6.9036 -2.1088 17 8 -0.9686 -6.0914 -2.6645 18 6 -0.3528 -8.3381 -2.4620 19 6 -1.2673 -8.7452 -3.4339 20 6 -1.3573 -10.0872 -3.7625 21 6 -0.5266 -10.9831 -3.1069 22 8 -0.3497 -12.3202 -3.1732 23 6 0.6080 -12.6595 -2.2936 24 8 1.0525 -13.9174 -2.0821 25 7 1.0475 -11.5968 -1.6722 26 6 0.3771 -10.5080 -2.1364 27 7 0.4328 -9.2150 -1.8515 28 6 1.9990 -4.4022 -1.3433 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.4937 -4.5189 1.3065 32 1 1.8857 -5.6373 0.9741 33 1 1.1926 -7.1469 -0.7274 34 1 -1.8997 -8.0203 -3.9247 35 1 -2.0568 -10.4277 -4.5118 36 1 1.7470 -13.9818 -1.4124 37 1 2.8278 -5.0933 -1.4960 38 1 1.8292 -3.7479 -2.1984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020923204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:28 Heat of formation + Delta-G solvation = -0.636358 kcal Electronic energy + Delta-G solvation = -24986.313431 eV Core-core repulsion = 21024.566768 eV Total energy + Delta-G solvation = -3961.746664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.69678 -41.54781 -40.29876 -39.35561 -38.90458 -35.94852 -35.76378 -34.48146 -33.37471 -31.72335 -31.06257 -27.02767 -26.51236 -25.94587 -24.97449 -24.25310 -23.64888 -22.20765 -20.62643 -20.44299 -19.76886 -19.33923 -18.70135 -18.64717 -18.53311 -17.37160 -16.65609 -16.37007 -16.22310 -15.98101 -15.66931 -15.22658 -15.05124 -14.96806 -14.62382 -14.52798 -14.37468 -14.28442 -13.62724 -13.32902 -13.29546 -12.79151 -12.62596 -12.41418 -12.38790 -12.15525 -11.82322 -11.75954 -11.47455 -11.29084 -10.88116 -10.83662 -10.69692 -10.07509 -9.82022 -9.01459 -7.93727 -5.23349 -0.73116 -0.60575 0.30448 1.02601 1.48949 1.50812 1.51460 1.59402 1.65838 2.06733 2.53601 2.57022 2.84839 3.03523 3.37901 3.49447 3.64291 3.66664 3.83654 3.88613 3.90659 4.12045 4.28364 4.30296 4.33837 4.62680 4.67191 4.79967 4.84209 4.99904 5.00626 5.15637 5.23022 5.29565 5.51799 5.64372 5.68118 6.10603 6.28594 6.39158 6.56874 7.06489 7.33564 8.09265 8.31217 9.29671 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.034914 B = 0.002183 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.783595 B =12821.681667 C =13386.026523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.153 3.847 11 H 0.078 0.922 12 C -0.140 4.140 13 C 0.128 3.872 14 H 0.083 0.917 15 N -0.682 5.682 16 C 0.567 3.433 17 O -0.561 6.561 18 C 0.105 3.895 19 C -0.102 4.102 20 C -0.011 4.011 21 C -0.037 4.037 22 O -0.196 6.196 23 C 0.494 3.506 24 O -0.393 6.393 25 N -0.533 5.533 26 C 0.241 3.759 27 N -0.437 5.437 28 C -0.170 4.170 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.419 0.581 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.467 0.533 37 H 0.101 0.899 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -31.761 -5.889 32.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.359 5.359 10 C 0.042 3.958 11 H 0.096 0.904 12 C -0.180 4.180 13 C 0.024 3.976 14 H 0.101 0.899 15 N -0.332 5.332 16 C 0.352 3.648 17 O -0.439 6.439 18 C -0.041 4.041 19 C -0.123 4.123 20 C -0.037 4.037 21 C -0.090 4.090 22 O -0.089 6.089 23 C 0.242 3.758 24 O -0.198 6.198 25 N -0.287 5.287 26 C 0.000 4.000 27 N -0.153 5.153 28 C -0.212 4.212 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.257 0.743 34 H 0.200 0.800 35 H 0.218 0.782 36 H 0.333 0.667 37 H 0.120 0.880 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.083 -31.102 -5.567 31.614 hybrid contribution -0.468 0.438 -0.480 0.801 sum 0.615 -30.663 -6.047 31.260 Atomic orbital electron populations 1.69837 1.06733 1.26094 1.59431 1.25633 0.96402 1.01330 1.03711 0.85099 0.77785 0.79313 0.77306 1.21654 1.22339 1.19034 1.19706 0.91681 0.84987 1.41057 0.90042 1.42381 1.05363 1.00767 1.87435 1.21205 0.95758 0.84514 0.94274 0.90358 1.23748 1.00254 0.99178 0.94777 1.22403 0.98293 0.80025 0.96915 0.89881 1.45855 1.38879 1.09443 1.39064 1.18052 0.80295 0.86451 0.80005 1.90827 1.44957 1.54177 1.53919 1.21012 0.94873 0.92259 0.95932 1.22157 0.97926 0.96106 0.96116 1.20760 0.96274 0.88450 0.98231 1.21289 1.03440 0.81047 1.03237 1.84383 1.49172 1.22513 1.52846 1.22430 0.83204 0.87147 0.82985 1.84735 1.58334 1.13759 1.63008 1.71075 1.30723 0.96364 1.30555 1.19923 0.94435 0.91073 0.94561 1.66492 1.22977 1.00031 1.25839 1.24171 0.97614 0.99439 0.99931 0.94050 0.79524 0.91642 0.86207 0.74257 0.79979 0.78239 0.66650 0.88047 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.72 -36.83 5.31 -320.44 -1.70 -38.53 16 10 C 0.15 5.94 4.56 45.52 0.21 6.14 16 11 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 12 C -0.14 -4.36 7.58 31.12 0.24 -4.12 16 13 C 0.13 4.32 4.12 45.52 0.19 4.51 16 14 H 0.08 3.42 7.46 -2.38 -0.02 3.40 16 15 N -0.68 -19.35 5.34 -442.71 -2.37 -21.71 16 16 C 0.57 17.09 7.81 86.85 0.68 17.76 16 17 O -0.56 -20.72 15.89 -3.80 -0.06 -20.78 16 18 C 0.10 2.52 6.74 41.94 0.28 2.80 16 19 C -0.10 -1.78 9.61 22.63 0.22 -1.56 16 20 C -0.01 -0.14 10.17 22.42 0.23 0.09 16 21 C -0.04 -0.64 7.44 23.01 0.17 -0.47 16 22 O -0.20 -3.01 10.78 11.60 0.13 -2.88 16 23 C 0.49 6.58 9.53 130.41 1.24 7.83 16 24 O -0.39 -1.93 13.62 -61.32 -0.84 -2.76 16 25 N -0.53 -10.11 11.37 -427.51 -4.86 -14.97 16 26 C 0.24 5.32 8.38 134.44 1.13 6.44 16 27 N -0.44 -10.72 9.57 -183.14 -1.75 -12.47 16 28 C -0.17 -5.96 7.68 31.12 0.24 -5.72 16 29 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.37 20.71 7.90 -92.71 -0.73 19.97 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.12 2.82 8.12 -2.39 -0.02 2.80 16 33 H 0.42 10.06 8.04 -92.70 -0.75 9.32 16 34 H 0.18 2.77 7.61 -2.91 -0.02 2.75 16 35 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.47 -2.55 9.06 -74.06 -0.67 -3.22 16 37 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -78.43 339.80 -4.00 -82.43 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.98 Total: 26.46 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.12 Total: 16.89 kcal Atomic # 7 Polarization: -137.63 SS G_CDS: -10.40 Total: -148.03 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.77 Total: -26.43 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.43 -4.00 -82.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020923204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.796 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds