Wall clock time and date at job start Tue Mar 31 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85149 * 25.33853 * 10 9 7 12 12 C 1.53785 * 113.61187 * 156.52742 * 10 9 7 13 13 C 1.53780 * 87.08174 * 139.98177 * 12 10 9 14 14 H 1.08994 * 113.61958 * 220.02268 * 13 12 10 15 15 N 1.46503 * 113.61674 * 89.20081 * 13 12 10 16 16 C 1.34771 * 120.00396 * 155.00354 * 15 13 12 17 17 O 1.21620 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.47337 * 120.00249 * 180.02562 * 16 15 13 19 19 N 1.35221 * 126.55864 * 0.02562 * 18 16 15 20 20 C 1.29991 * 108.84053 * 179.97438 * 19 18 16 21 21 O 1.33995 * 109.70566 * 359.97438 * 20 19 18 22 22 C 1.34773 * 108.09918 * 359.76670 * 21 20 19 23 23 C 1.47770 * 126.75896 * 180.22986 * 22 21 20 24 24 C 1.42481 * 126.97238 * 359.87220 * 23 22 21 25 25 C 1.35177 * 103.92850 * 179.85402 * 24 23 22 26 26 O 1.34075 * 106.74130 * 0.40134 * 25 24 23 27 27 N 1.20904 * 111.89670 * 359.72522 * 26 25 24 28 28 C 1.53781 * 113.61833 * 254.13659 * 10 9 7 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.08995 * 113.61900 * 254.52922 * 12 10 9 32 32 H 1.08999 * 113.61372 * 25.44046 * 12 10 9 33 33 H 0.97008 * 119.99277 * 335.00406 * 15 13 12 34 34 H 1.08000 * 125.14625 * 180.02562 * 20 19 18 35 35 H 1.08007 * 128.03310 * 359.95676 * 24 23 22 36 36 H 1.08000 * 126.63253 * 180.09613 * 25 24 23 37 37 H 1.09001 * 113.61154 * 334.57087 * 28 10 9 38 38 H 1.08996 * 113.61315 * 105.47163 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0561 -3.5693 0.4304 12 6 1.2469 -4.8364 0.5618 13 6 1.8607 -5.6903 -0.5603 14 1 1.1564 -6.3880 -1.0131 15 7 3.1291 -6.3228 -0.1895 16 6 3.5278 -7.4495 -0.8124 17 8 2.8343 -7.9415 -1.6820 18 6 4.8031 -8.0859 -0.4391 19 7 5.6719 -7.6564 0.5039 20 6 6.6810 -8.4746 0.5488 21 8 6.5091 -9.4537 -0.3497 22 6 5.3379 -9.2411 -0.9817 23 6 4.7436 -10.0753 -2.0469 24 6 5.2931 -11.2617 -2.6131 25 6 4.3757 -11.6391 -3.5314 26 8 3.3917 -10.7294 -3.4906 27 7 3.6055 -9.8704 -2.6671 28 6 2.0328 -4.3828 -1.3548 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 1.5554 -5.1422 1.5615 32 1 0.1684 -4.7069 0.4715 33 1 3.6820 -5.9305 0.5044 34 1 7.5290 -8.3802 1.2109 35 1 6.2252 -11.7477 -2.3648 36 1 4.4279 -12.5034 -4.1769 37 1 1.1695 -4.1290 -1.9700 38 1 2.9746 -4.3228 -1.9000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020936642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:04 Heat of formation + Delta-G solvation = 109.937117 kcal Electronic energy + Delta-G solvation = -25509.422285 eV Core-core repulsion = 21552.470447 eV Total energy + Delta-G solvation = -3956.951838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.26480 -43.74740 -39.77405 -37.85457 -35.35228 -34.77592 -33.93089 -32.45603 -32.13272 -30.34021 -29.74518 -25.64965 -25.06515 -24.38232 -24.12286 -22.90573 -22.34901 -21.65237 -20.53214 -19.04344 -18.76134 -17.98918 -17.95920 -17.09945 -17.05811 -16.60289 -15.92760 -15.49887 -15.09533 -14.73262 -14.57346 -14.17505 -13.90080 -13.76149 -13.54194 -13.37087 -12.62070 -12.14103 -11.79750 -11.77424 -11.70933 -11.57347 -11.39017 -11.17691 -10.85893 -10.73551 -10.26526 -10.22356 -10.09266 -9.95586 -9.83409 -9.51432 -9.05730 -8.85885 -8.65681 -6.94107 -5.76156 -3.04920 0.24293 1.25356 1.74583 1.80942 2.15918 2.92113 3.08596 3.30666 3.45122 3.49407 3.50505 3.63853 3.81559 4.05606 4.55819 4.61024 4.68971 4.77322 4.92782 5.09052 5.14195 5.26988 5.35301 5.48025 5.50114 5.55104 5.65642 5.91862 5.99219 6.19027 6.31532 6.38245 6.57867 6.69453 6.75257 6.99583 7.15002 7.67870 7.71068 7.91651 8.30483 8.42486 9.53513 10.11231 10.45984 11.46207 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002589 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.746832 B =10813.798198 C =11513.967462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.073 0.927 12 C -0.158 4.158 13 C 0.117 3.883 14 H 0.098 0.902 15 N -0.689 5.689 16 C 0.585 3.415 17 O -0.499 6.499 18 C -0.022 4.022 19 N -0.459 5.459 20 C 0.190 3.810 21 O -0.187 6.187 22 C 0.091 3.909 23 C 0.052 3.948 24 C -0.212 4.212 25 C -0.064 4.064 26 O 0.127 5.873 27 N -0.260 5.260 28 C -0.175 4.175 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.263 0.737 35 H 0.177 0.823 36 H 0.221 0.779 37 H 0.087 0.913 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.986 -27.165 -2.346 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.197 4.197 13 C 0.012 3.988 14 H 0.116 0.884 15 N -0.340 5.340 16 C 0.369 3.631 17 O -0.372 6.372 18 C -0.146 4.146 19 N -0.187 5.187 20 C -0.037 4.037 21 O -0.072 6.072 22 C 0.034 3.966 23 C -0.104 4.104 24 C -0.234 4.234 25 C -0.144 4.144 26 O 0.047 5.953 27 N 0.045 4.955 28 C -0.217 4.217 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.278 0.722 35 H 0.194 0.806 36 H 0.237 0.763 37 H 0.105 0.895 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.587 -25.810 -2.444 28.819 hybrid contribution 1.633 0.038 0.188 1.645 sum 14.220 -25.772 -2.256 29.521 Atomic orbital electron populations 1.69652 1.05118 1.25843 1.57470 1.24762 0.95529 0.97762 1.02849 0.86260 0.78533 0.83505 0.77851 1.21678 1.21241 1.21260 1.19255 0.91043 0.84246 1.42941 0.91183 1.42390 1.05749 0.99833 1.87043 1.21627 0.95035 0.85169 0.92745 0.90882 1.23832 1.01428 0.97208 0.97278 1.21896 0.84705 0.94051 0.98191 0.88406 1.45485 1.23012 1.25448 1.40049 1.16714 0.83009 0.81009 0.82371 1.90965 1.53362 1.62914 1.30002 1.22065 0.98667 0.95778 0.98110 1.70512 1.02428 1.27720 1.18063 1.28190 1.00074 0.82867 0.92586 1.84380 1.33895 1.46746 1.42184 1.19689 0.85566 0.95538 0.95769 1.20189 0.94447 0.96449 0.99304 1.22782 1.03410 0.97240 0.99939 1.25991 0.88824 0.97635 1.01980 1.85052 1.40255 1.26585 1.43439 1.75137 1.13940 1.06531 0.99846 1.24332 1.01949 0.95027 1.00396 0.93410 0.78014 0.91674 0.88903 0.75740 0.72197 0.80608 0.76253 0.89459 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.86 9.97 -15.06 -0.15 -7.01 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -18.11 5.41 -52.64 -0.28 -18.40 16 10 C 0.17 3.36 4.35 -67.12 -0.29 3.07 16 11 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 12 C -0.16 -2.66 7.58 -25.92 -0.20 -2.86 16 13 C 0.12 1.93 4.33 -67.02 -0.29 1.64 16 14 H 0.10 1.66 7.46 -51.93 -0.39 1.27 16 15 N -0.69 -10.64 5.26 -54.03 -0.28 -10.92 16 16 C 0.59 9.56 7.81 -12.56 -0.10 9.46 16 17 O -0.50 -9.28 13.01 5.26 0.07 -9.22 16 18 C -0.02 -0.31 7.05 -82.62 -0.58 -0.89 16 19 N -0.46 -5.39 11.00 -11.16 -0.12 -5.51 16 20 C 0.19 1.46 13.16 51.98 0.68 2.14 16 21 O -0.19 -1.74 10.75 5.23 0.06 -1.68 16 22 C 0.09 1.14 7.37 -35.63 -0.26 0.88 16 23 C 0.05 0.63 7.12 -82.60 -0.59 0.04 16 24 C -0.21 -1.63 11.15 -39.04 -0.44 -2.07 16 25 C -0.06 -0.40 12.27 29.64 0.36 -0.03 16 26 O 0.13 1.35 11.18 17.09 0.19 1.54 16 27 N -0.26 -3.66 8.71 33.27 0.29 -3.38 16 28 C -0.17 -3.29 7.69 -25.83 -0.20 -3.49 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.35 7.91 -40.82 -0.32 10.03 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 33 H 0.41 5.82 8.43 -40.82 -0.34 5.48 16 34 H 0.26 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.22 0.22 8.06 -52.49 -0.42 -0.21 16 37 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -36.35 339.35 -5.39 -41.75 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -3.98 Total: 10.39 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.14 Total: 0.41 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.32 Total: -65.91 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.32 Total: -9.36 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.35 -5.39 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020936642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.684 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds