Wall clock time and date at job start Tue Mar 31 2020 12:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85149 * 25.33853 * 10 9 7 12 12 C 1.53785 * 113.61187 * 156.52742 * 10 9 7 13 13 C 1.53780 * 87.08174 * 139.98177 * 12 10 9 14 14 H 1.08994 * 113.61958 * 220.02268 * 13 12 10 15 15 N 1.46503 * 113.61674 * 89.20081 * 13 12 10 16 16 C 1.34771 * 120.00396 * 155.00354 * 15 13 12 17 17 O 1.21620 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.47337 * 120.00249 * 180.02562 * 16 15 13 19 19 N 1.35221 * 126.55864 * 0.02562 * 18 16 15 20 20 C 1.29991 * 108.84053 * 179.97438 * 19 18 16 21 21 O 1.33995 * 109.70566 * 359.97438 * 20 19 18 22 22 C 1.34773 * 108.09918 * 359.76670 * 21 20 19 23 23 C 1.47770 * 126.75896 * 180.22986 * 22 21 20 24 24 C 1.42481 * 126.97238 * 359.87220 * 23 22 21 25 25 C 1.35177 * 103.92850 * 179.85402 * 24 23 22 26 26 O 1.34075 * 106.74130 * 0.40134 * 25 24 23 27 27 N 1.20904 * 111.89670 * 359.72522 * 26 25 24 28 28 C 1.53781 * 113.61833 * 254.13659 * 10 9 7 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.08995 * 113.61900 * 254.52922 * 12 10 9 32 32 H 1.08999 * 113.61372 * 25.44046 * 12 10 9 33 33 H 0.97008 * 119.99277 * 335.00406 * 15 13 12 34 34 H 1.08000 * 125.14625 * 180.02562 * 20 19 18 35 35 H 1.08007 * 128.03310 * 359.95676 * 24 23 22 36 36 H 1.08000 * 126.63253 * 180.09613 * 25 24 23 37 37 H 1.09001 * 113.61154 * 334.57087 * 28 10 9 38 38 H 1.08996 * 113.61315 * 105.47163 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0561 -3.5693 0.4304 12 6 1.2469 -4.8364 0.5618 13 6 1.8607 -5.6903 -0.5603 14 1 1.1564 -6.3880 -1.0131 15 7 3.1291 -6.3228 -0.1895 16 6 3.5278 -7.4495 -0.8124 17 8 2.8343 -7.9415 -1.6820 18 6 4.8031 -8.0859 -0.4391 19 7 5.6719 -7.6564 0.5039 20 6 6.6810 -8.4746 0.5488 21 8 6.5091 -9.4537 -0.3497 22 6 5.3379 -9.2411 -0.9817 23 6 4.7436 -10.0753 -2.0469 24 6 5.2931 -11.2617 -2.6131 25 6 4.3757 -11.6391 -3.5314 26 8 3.3917 -10.7294 -3.4906 27 7 3.6055 -9.8704 -2.6671 28 6 2.0328 -4.3828 -1.3548 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 1.5554 -5.1422 1.5615 32 1 0.1684 -4.7069 0.4715 33 1 3.6820 -5.9305 0.5044 34 1 7.5290 -8.3802 1.2109 35 1 6.2252 -11.7477 -2.3648 36 1 4.4279 -12.5034 -4.1769 37 1 1.1695 -4.1290 -1.9700 38 1 2.9746 -4.3228 -1.9000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020936642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:03 Heat of formation + Delta-G solvation = 80.288939 kcal Electronic energy + Delta-G solvation = -25510.707926 eV Core-core repulsion = 21552.470447 eV Total energy + Delta-G solvation = -3958.237479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.02082 -44.52538 -41.12476 -39.29596 -36.19501 -35.80664 -35.46908 -34.03556 -32.81163 -31.86697 -31.03749 -26.97026 -26.58019 -25.88504 -25.00549 -23.94780 -23.50241 -22.73670 -21.48679 -20.39519 -19.79497 -19.15689 -18.78671 -18.75845 -17.88184 -17.52093 -17.13408 -16.72636 -16.38309 -16.00934 -15.73301 -15.62455 -15.36040 -15.03740 -14.55190 -14.28951 -14.10604 -13.61757 -13.46130 -13.35511 -12.80279 -12.65181 -12.63602 -12.44250 -12.22511 -12.18887 -11.97540 -11.87788 -11.76278 -11.25221 -11.18600 -10.86117 -10.69455 -10.15226 -9.78700 -9.00882 -7.95628 -5.24609 -0.61762 0.70415 0.94803 1.05279 1.37296 1.46488 1.49659 1.55749 1.93720 2.18891 2.43906 2.55734 2.97606 3.07976 3.32545 3.35025 3.61272 3.66813 3.79309 3.92444 3.98999 4.12801 4.27716 4.29022 4.35252 4.44492 4.66783 4.72050 4.85745 4.87079 5.01784 5.03379 5.08007 5.16135 5.19863 5.48418 5.63957 6.17541 6.26177 6.50300 7.07128 7.27822 7.32353 8.07769 8.31770 9.27379 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002589 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.746832 B =10813.798198 C =11513.967462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.295 1.295 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.726 5.726 10 C 0.155 3.845 11 H 0.077 0.923 12 C -0.140 4.140 13 C 0.135 3.865 14 H 0.095 0.905 15 N -0.685 5.685 16 C 0.580 3.420 17 O -0.527 6.527 18 C -0.053 4.053 19 N -0.492 5.492 20 C 0.222 3.778 21 O -0.177 6.177 22 C 0.089 3.911 23 C 0.021 3.979 24 C -0.212 4.212 25 C -0.042 4.042 26 O 0.117 5.883 27 N -0.315 5.315 28 C -0.170 4.170 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.413 0.587 34 H 0.320 0.680 35 H 0.207 0.793 36 H 0.274 0.726 37 H 0.075 0.925 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.725 -29.178 -1.946 33.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.221 1.221 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.363 5.363 10 C 0.045 3.955 11 H 0.095 0.905 12 C -0.179 4.179 13 C 0.029 3.971 14 H 0.113 0.887 15 N -0.336 5.336 16 C 0.365 3.635 17 O -0.403 6.403 18 C -0.176 4.176 19 N -0.220 5.220 20 C -0.005 4.005 21 O -0.062 6.062 22 C 0.031 3.969 23 C -0.133 4.133 24 C -0.234 4.234 25 C -0.122 4.122 26 O 0.037 5.963 27 N -0.011 5.011 28 C -0.212 4.212 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.334 0.666 35 H 0.224 0.776 36 H 0.290 0.710 37 H 0.094 0.906 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.369 -27.853 -2.027 31.877 hybrid contribution 0.911 0.485 0.034 1.032 sum 16.279 -27.369 -1.993 31.907 Atomic orbital electron populations 1.69811 1.06602 1.26199 1.59345 1.25586 0.96410 1.01161 1.03624 0.85211 0.77216 0.79156 0.78182 1.22117 1.20129 1.20642 1.19652 0.91504 0.85396 1.41330 0.90656 1.42555 1.05425 1.00898 1.87448 1.21900 0.95402 0.84197 0.94008 0.90523 1.23652 1.01010 0.94964 0.98269 1.21603 0.85286 0.92989 0.97221 0.88686 1.45400 1.22595 1.25423 1.40198 1.17099 0.83784 0.80790 0.81801 1.90951 1.54555 1.63628 1.31162 1.21761 0.98649 0.97035 1.00159 1.70474 1.03520 1.29432 1.18538 1.29517 0.99656 0.80511 0.90854 1.84423 1.32512 1.47073 1.42224 1.19839 0.86195 0.95093 0.95811 1.20632 0.94808 0.98131 0.99766 1.23187 1.04737 0.95780 0.99724 1.27004 0.86642 0.97246 1.01260 1.84976 1.41540 1.27019 1.42753 1.75141 1.15739 1.08613 1.01656 1.24181 1.01118 0.96360 0.99566 0.93960 0.79242 0.89776 0.88833 0.75018 0.66602 0.77621 0.71016 0.90621 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.20 13.06 21.65 0.28 -59.91 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.25 -13.99 9.97 84.03 0.84 -13.16 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -37.46 5.41 -320.45 -1.73 -39.19 16 10 C 0.15 6.29 4.35 45.52 0.20 6.49 16 11 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 12 C -0.14 -4.66 7.58 31.12 0.24 -4.42 16 13 C 0.13 4.49 4.33 45.58 0.20 4.69 16 14 H 0.10 3.29 7.46 -2.39 -0.02 3.27 16 15 N -0.69 -21.32 5.26 -443.10 -2.33 -23.65 16 16 C 0.58 19.44 7.81 86.64 0.68 20.12 16 17 O -0.53 -20.48 13.01 -4.09 -0.05 -20.53 16 18 C -0.05 -1.49 7.05 41.05 0.29 -1.20 16 19 N -0.49 -10.87 11.00 -304.13 -3.35 -14.21 16 20 C 0.22 2.72 13.16 130.52 1.72 4.43 16 21 O -0.18 -2.88 10.75 -4.20 -0.05 -2.93 16 22 C 0.09 2.17 7.37 24.83 0.18 2.35 16 23 C 0.02 0.51 7.12 42.81 0.30 0.81 16 24 C -0.21 -2.81 11.15 22.62 0.25 -2.56 16 25 C -0.04 -0.41 12.27 67.11 0.82 0.41 16 26 O 0.12 2.45 11.18 71.32 0.80 3.25 16 27 N -0.32 -9.13 8.71 -49.48 -0.43 -9.56 16 28 C -0.17 -6.53 7.69 31.18 0.24 -6.29 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.38 20.65 7.91 -92.71 -0.73 19.92 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 3.16 8.11 -2.39 -0.02 3.14 16 33 H 0.41 11.74 8.43 -92.70 -0.78 10.96 16 34 H 0.32 -0.55 8.06 -2.91 -0.02 -0.58 16 35 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.27 -0.73 8.06 -2.91 -0.02 -0.75 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -83.07 339.35 1.22 -81.85 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.37 Total: 28.33 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.42 Total: 7.72 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -7.56 Total: -146.53 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.70 Total: -20.20 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -83.07 1.22 -81.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020936642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.137 kcal (2) G-P(sol) polarization free energy of solvation -83.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds