Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21608 * 120.00442 * 359.97438 * 13 12 11 15 15 C 1.47432 * 119.99874 * 180.02562 * 13 12 11 16 16 C 1.41294 * 126.41453 * 359.67951 * 15 13 12 17 17 N 1.30449 * 108.02338 * 179.87862 * 16 15 13 18 18 N 1.39929 * 108.89683 * 0.38905 * 17 16 15 19 19 C 1.46496 * 125.75603 * 179.72373 * 18 17 16 20 20 C 1.52994 * 109.47426 * 305.02602 * 19 18 17 21 21 F 1.39905 * 109.47031 * 59.99601 * 20 19 18 22 22 F 1.39898 * 109.47291 * 179.97438 * 20 19 18 23 23 F 1.39896 * 109.47189 * 300.00010 * 20 19 18 24 24 C 1.34264 * 108.49552 * 359.74745 * 18 17 16 25 25 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 26 26 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 27 27 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 28 28 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 29 29 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 30 30 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 31 31 H 1.08005 * 125.98693 * 0.02562 * 16 15 13 32 32 H 1.09004 * 109.47035 * 65.02713 * 19 18 17 33 33 H 1.09008 * 109.47376 * 185.02369 * 19 18 17 34 34 H 1.07994 * 126.29817 * 180.02562 * 24 18 17 35 35 H 1.09003 * 113.46756 * 321.86183 * 25 9 7 36 36 H 1.09002 * 113.46950 * 92.29471 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5382 -0.5200 1.7839 15 6 6.6452 -1.0079 3.8839 16 6 5.6196 -1.4584 4.7451 17 7 6.0569 -1.3758 5.9713 18 7 7.3606 -0.8676 5.9542 19 6 8.1981 -0.6196 7.1303 20 6 7.4528 0.2959 8.1034 21 9 6.2604 -0.3184 8.5012 22 9 8.2524 0.5322 9.2267 23 9 7.1636 1.5105 7.4724 24 6 7.7143 -0.6451 4.6783 25 6 4.4119 -2.2308 -0.3351 26 1 -0.4850 -0.8371 0.0714 27 1 4.6555 0.1232 -1.2580 28 1 4.2793 0.6479 0.4390 29 1 6.3880 -1.2388 -0.1697 30 1 4.7057 -1.6541 2.2664 31 1 4.6452 -1.8116 4.4412 32 1 8.4234 -1.5660 7.6220 33 1 9.1272 -0.1410 6.8204 34 1 8.6612 -0.2544 4.3362 35 1 4.2436 -3.1278 0.2608 36 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030448378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -37.533190 kcal Electronic energy + Delta-G solvation = -26289.709071 eV Core-core repulsion = 21784.505701 eV Total energy + Delta-G solvation = -4505.203371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -50.55662 -48.12594 -47.96642 -41.68440 -39.54000 -37.79935 -34.59638 -33.38787 -32.12565 -30.70725 -29.35577 -27.73447 -25.37463 -24.49679 -23.57807 -22.15701 -21.38912 -20.25335 -19.47586 -19.13686 -18.97988 -18.47965 -17.48626 -17.46836 -16.13695 -15.93748 -15.64029 -15.09569 -14.97016 -14.80268 -14.61330 -14.44501 -14.36896 -14.16913 -14.12781 -14.10011 -13.74093 -13.43944 -13.22718 -13.05272 -12.92351 -12.57915 -12.01998 -11.36174 -11.32488 -11.02886 -10.55086 -10.30753 -10.02621 -9.78159 -9.49087 -9.21153 -9.06614 -8.87505 -8.47327 -7.17566 -6.33549 -3.25060 1.12417 1.57998 1.95499 2.18067 3.12699 3.31236 3.42072 3.44911 3.47577 3.52301 3.62841 3.66665 4.11489 4.29589 4.39598 4.55785 4.58946 4.72749 4.95596 5.06719 5.14622 5.41633 5.49252 5.86647 5.93261 6.10215 6.20658 6.25378 6.26568 6.32903 6.43564 6.98795 7.08111 7.15129 7.85089 8.21813 8.46924 8.95667 9.48534 10.34208 11.19099 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.003194 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.703462 B = 8763.569274 C = 9441.801148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.308 4.308 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.084 3.916 11 C 0.101 3.899 12 N -0.689 5.689 13 C 0.595 3.405 14 O -0.556 6.556 15 C -0.276 4.276 16 C 0.096 3.904 17 N -0.284 5.284 18 N -0.381 5.381 19 C 0.095 3.905 20 C 0.445 3.555 21 F -0.162 7.162 22 F -0.177 7.177 23 F -0.176 7.176 24 C 0.134 3.866 25 C 0.114 3.886 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.406 0.594 31 H 0.198 0.802 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.194 0.806 35 H 0.049 0.951 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.625 -2.841 15.719 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.221 4.221 3 Si 0.903 3.097 4 H -0.224 1.224 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.434 4.434 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.043 4.043 11 C -0.006 4.006 12 N -0.338 5.338 13 C 0.382 3.618 14 O -0.436 6.436 15 C -0.290 4.290 16 C -0.093 4.093 17 N -0.102 5.102 18 N -0.161 5.161 19 C -0.029 4.029 20 C 0.389 3.611 21 F -0.143 7.143 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.014 4.014 25 C -0.013 4.013 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.241 0.759 31 H 0.215 0.785 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.210 0.790 35 H 0.068 0.932 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.597 -1.069 16.606 26.478 hybrid contribution -0.244 -1.508 -0.433 1.588 sum 20.352 -2.578 16.173 26.123 Atomic orbital electron populations 1.70930 1.05392 1.29462 1.51761 1.25701 0.96380 1.00966 0.99071 0.83686 0.73684 0.75982 0.76320 1.22364 1.22205 1.21369 1.20102 0.78798 0.95724 1.48748 0.89942 1.46120 1.02380 1.01697 1.85547 1.23281 0.87884 0.94396 0.98698 1.22468 0.98814 0.99271 0.80012 1.45258 1.16436 1.65006 1.07120 1.17120 0.82596 0.76924 0.85165 1.90747 1.36742 1.47838 1.68256 1.20377 0.96203 1.17731 0.94689 1.24338 0.99664 0.96070 0.89206 1.77395 0.91117 1.20079 1.21640 1.47990 1.12752 1.50727 1.04662 1.22835 0.92978 1.02063 0.85018 1.20533 0.79045 0.80479 0.80997 1.93302 1.47571 1.82228 1.91245 1.93227 1.73524 1.94880 1.54189 1.93254 1.93853 1.46860 1.81757 1.22979 1.00041 0.95774 0.82599 1.22714 0.87166 0.93589 0.97874 0.92906 0.92739 0.92777 0.87725 0.75895 0.78509 0.84795 0.83825 0.78958 0.93232 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.24 13.70 55.49 0.76 -28.48 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.07 27.06 25.13 -169.99 -4.27 22.79 16 4 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 5 H -0.29 -7.14 6.65 56.52 0.38 -6.76 16 6 H -0.29 -6.80 6.13 56.52 0.35 -6.45 16 7 C -0.31 -8.58 11.08 -15.06 -0.17 -8.75 16 8 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 9 N -0.63 -14.75 3.70 -184.60 -0.68 -15.44 16 10 C 0.08 1.76 5.54 -8.36 -0.05 1.72 16 11 C 0.10 1.75 4.61 -67.67 -0.31 1.43 16 12 N -0.69 -10.98 5.39 -54.55 -0.29 -11.28 16 13 C 0.59 9.20 7.81 -12.52 -0.10 9.11 16 14 O -0.56 -9.94 16.49 5.27 0.09 -9.86 16 15 C -0.28 -3.48 6.13 -105.06 -0.64 -4.13 16 16 C 0.10 1.16 11.50 -16.98 -0.20 0.96 16 17 N -0.28 -3.43 11.41 30.86 0.35 -3.08 16 18 N -0.38 -3.53 3.57 -60.81 -0.22 -3.75 16 19 C 0.10 0.48 6.49 -4.05 -0.03 0.46 16 20 C 0.44 3.52 3.28 37.15 0.12 3.64 16 21 F -0.16 -1.73 16.26 2.25 0.04 -1.69 16 22 F -0.18 -1.26 17.32 2.25 0.04 -1.22 16 23 F -0.18 -1.79 17.24 2.25 0.04 -1.76 16 24 C 0.13 1.32 11.25 -16.56 -0.19 1.13 16 25 C 0.11 2.09 8.44 -8.51 -0.07 2.02 16 26 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 27 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 28 H 0.05 1.21 4.65 -51.93 -0.24 0.97 16 29 H 0.10 1.69 7.45 -51.93 -0.39 1.31 16 30 H 0.41 6.13 7.72 -40.82 -0.31 5.81 16 31 H 0.20 2.01 7.50 -52.48 -0.39 1.62 16 32 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.14 0.18 8.06 -51.92 -0.42 -0.24 16 34 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -36.40 324.08 -4.49 -40.89 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.50 Total: 1.15 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.72 Total: 6.84 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.08 Total: -62.02 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.11 Total: -4.67 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.27 Total: 22.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.40 -4.49 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030448378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.358 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds