Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21608 * 120.00442 * 359.97438 * 13 12 11 15 15 C 1.47432 * 119.99874 * 180.02562 * 13 12 11 16 16 C 1.41294 * 126.41453 * 359.67951 * 15 13 12 17 17 N 1.30449 * 108.02338 * 179.87862 * 16 15 13 18 18 N 1.39929 * 108.89683 * 0.38905 * 17 16 15 19 19 C 1.46496 * 125.75603 * 179.72373 * 18 17 16 20 20 C 1.52994 * 109.47426 * 305.02602 * 19 18 17 21 21 F 1.39905 * 109.47031 * 59.99601 * 20 19 18 22 22 F 1.39898 * 109.47291 * 179.97438 * 20 19 18 23 23 F 1.39896 * 109.47189 * 300.00010 * 20 19 18 24 24 C 1.34264 * 108.49552 * 359.74745 * 18 17 16 25 25 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 26 26 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 27 27 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 28 28 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 29 29 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 30 30 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 31 31 H 1.08005 * 125.98693 * 0.02562 * 16 15 13 32 32 H 1.09004 * 109.47035 * 65.02713 * 19 18 17 33 33 H 1.09008 * 109.47376 * 185.02369 * 19 18 17 34 34 H 1.07994 * 126.29817 * 180.02562 * 24 18 17 35 35 H 1.09003 * 113.46756 * 321.86183 * 25 9 7 36 36 H 1.09002 * 113.46950 * 92.29471 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5382 -0.5200 1.7839 15 6 6.6452 -1.0079 3.8839 16 6 5.6196 -1.4584 4.7451 17 7 6.0569 -1.3758 5.9713 18 7 7.3606 -0.8676 5.9542 19 6 8.1981 -0.6196 7.1303 20 6 7.4528 0.2959 8.1034 21 9 6.2604 -0.3184 8.5012 22 9 8.2524 0.5322 9.2267 23 9 7.1636 1.5105 7.4724 24 6 7.7143 -0.6451 4.6783 25 6 4.4119 -2.2308 -0.3351 26 1 -0.4850 -0.8371 0.0714 27 1 4.6555 0.1232 -1.2580 28 1 4.2793 0.6479 0.4390 29 1 6.3880 -1.2388 -0.1697 30 1 4.7057 -1.6541 2.2664 31 1 4.6452 -1.8116 4.4412 32 1 8.4234 -1.5660 7.6220 33 1 9.1272 -0.1410 6.8204 34 1 8.6612 -0.2544 4.3362 35 1 4.2436 -3.1278 0.2608 36 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030448378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -65.277145 kcal Electronic energy + Delta-G solvation = -26290.912140 eV Core-core repulsion = 21784.505701 eV Total energy + Delta-G solvation = -4506.406439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.20091 -48.75504 -48.67146 -42.50800 -40.91494 -39.21067 -35.33236 -34.96056 -33.94846 -31.55798 -30.30366 -29.37683 -26.97530 -25.39886 -24.65918 -23.62197 -22.19200 -21.33545 -21.04279 -19.82544 -19.63449 -19.48603 -19.26644 -18.22507 -17.42611 -17.12525 -16.54284 -16.36642 -15.92873 -15.71045 -15.60183 -15.51855 -15.39266 -15.19856 -15.11296 -15.07862 -14.84533 -14.80581 -14.43256 -14.00586 -13.78394 -13.50528 -13.28311 -13.18635 -12.74988 -12.44524 -12.17660 -12.00147 -11.33473 -11.21687 -11.02761 -10.91618 -10.80013 -10.07275 -9.73750 -9.17687 -8.61338 -5.43285 0.34459 0.94346 1.03938 1.40454 1.47065 1.60723 1.66318 2.24556 2.41656 2.53274 2.59170 2.85629 2.98342 3.04384 3.27231 3.49341 3.66588 3.70758 3.89060 4.02469 4.03907 4.31068 4.35375 4.41448 4.59043 4.69246 4.74225 4.83170 5.00527 5.22393 5.23468 5.58932 5.64564 5.98475 6.32350 6.64258 6.73376 7.27351 7.35869 8.30099 8.94548 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.003194 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.703462 B = 8763.569274 C = 9441.801148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 1.107 2.893 4 H -0.309 1.309 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.283 4.283 8 H 0.057 0.943 9 N -0.656 5.656 10 C 0.073 3.927 11 C 0.125 3.875 12 N -0.694 5.694 13 C 0.599 3.401 14 O -0.581 6.581 15 C -0.308 4.308 16 C 0.091 3.909 17 N -0.311 5.311 18 N -0.375 5.375 19 C 0.093 3.907 20 C 0.440 3.560 21 F -0.183 7.183 22 F -0.172 7.172 23 F -0.192 7.192 24 C 0.158 3.842 25 C 0.117 3.883 26 H 0.248 0.752 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.126 0.874 30 H 0.408 0.592 31 H 0.202 0.798 32 H 0.162 0.838 33 H 0.191 0.809 34 H 0.227 0.773 35 H 0.060 0.940 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.227 -2.917 16.337 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.274 4.274 3 Si 0.935 3.065 4 H -0.238 1.238 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.410 4.410 8 H 0.075 0.925 9 N -0.385 5.385 10 C -0.053 4.053 11 C 0.018 3.982 12 N -0.343 5.343 13 C 0.388 3.612 14 O -0.463 6.463 15 C -0.322 4.322 16 C -0.097 4.097 17 N -0.129 5.129 18 N -0.154 5.154 19 C -0.029 4.029 20 C 0.385 3.615 21 F -0.165 7.165 22 F -0.153 7.153 23 F -0.174 7.174 24 C 0.008 3.992 25 C -0.009 4.009 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.243 0.757 31 H 0.219 0.781 32 H 0.180 0.820 33 H 0.208 0.792 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.257 -1.188 17.253 29.790 hybrid contribution -1.245 -1.576 -0.511 2.072 sum 23.011 -2.764 16.742 28.591 Atomic orbital electron populations 1.71019 1.06732 1.28726 1.55575 1.26794 0.96412 1.04170 1.00027 0.83228 0.73003 0.72493 0.77732 1.23800 1.20968 1.18693 1.19987 0.81151 0.94389 1.45489 0.92498 1.46169 1.01573 1.04889 1.85910 1.23522 0.87961 0.94490 0.99302 1.22211 0.98657 0.96496 0.80860 1.45307 1.16972 1.65351 1.06647 1.17409 0.81762 0.75803 0.86177 1.90724 1.37427 1.49072 1.69076 1.20250 0.97867 1.20755 0.93364 1.24459 1.00014 0.96013 0.89259 1.77353 0.92885 1.21030 1.21665 1.48249 1.12126 1.49219 1.05785 1.23382 0.93016 1.03232 0.83281 1.20981 0.78632 0.80268 0.81633 1.93262 1.49162 1.82506 1.91559 1.93235 1.73115 1.94866 1.54118 1.93222 1.94031 1.48101 1.82039 1.23452 1.00197 0.93284 0.82287 1.22916 0.85295 0.93289 0.99356 0.94306 0.91571 0.94123 0.85678 0.75656 0.78116 0.81995 0.79185 0.75670 0.92146 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.99 13.70 21.65 0.30 -62.70 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 1.11 54.87 25.13 68.60 1.72 56.59 16 4 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 5 H -0.28 -13.25 6.65 99.48 0.66 -12.59 16 6 H -0.26 -11.72 6.13 99.48 0.61 -11.11 16 7 C -0.28 -15.90 11.08 84.03 0.93 -14.97 16 8 H 0.06 3.43 8.05 -2.91 -0.02 3.40 16 9 N -0.66 -29.97 3.70 -737.96 -2.73 -32.69 16 10 C 0.07 2.91 5.54 83.27 0.46 3.37 16 11 C 0.12 3.98 4.61 45.55 0.21 4.19 16 12 N -0.69 -20.81 5.39 -444.76 -2.40 -23.21 16 13 C 0.60 17.28 7.81 86.67 0.68 17.96 16 14 O -0.58 -19.28 16.49 -4.06 -0.07 -19.35 16 15 C -0.31 -7.15 6.13 -20.15 -0.12 -7.28 16 16 C 0.09 2.09 11.50 85.65 0.99 3.08 16 17 N -0.31 -7.03 11.41 -56.27 -0.64 -7.67 16 18 N -0.37 -5.80 3.57 -346.30 -1.24 -7.04 16 19 C 0.09 0.58 6.49 86.38 0.56 1.14 16 20 C 0.44 6.00 3.28 71.98 0.24 6.24 16 21 F -0.18 -3.73 16.26 44.97 0.73 -3.00 16 22 F -0.17 -2.07 17.32 44.97 0.78 -1.29 16 23 F -0.19 -3.60 17.24 44.97 0.78 -2.83 16 24 C 0.16 2.56 11.25 84.28 0.95 3.51 16 25 C 0.12 4.01 8.44 83.18 0.70 4.71 16 26 H 0.25 15.97 8.73 -92.70 -0.81 15.16 16 27 H 0.07 2.50 7.73 -2.39 -0.02 2.48 16 28 H 0.04 1.74 4.65 -2.39 -0.01 1.73 16 29 H 0.13 3.60 7.45 -2.39 -0.02 3.58 16 30 H 0.41 11.87 7.72 -92.71 -0.72 11.15 16 31 H 0.20 4.08 7.50 -2.91 -0.02 4.06 16 32 H 0.16 0.20 8.14 -2.38 -0.02 0.19 16 33 H 0.19 -0.58 8.06 -2.38 -0.02 -0.60 16 34 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -80.74 324.08 3.55 -77.19 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.26 Total: 8.45 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.05 Total: 17.55 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -6.71 Total: -133.31 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.07 Total: -19.35 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 2.28 Total: -7.12 kcal Atomic # 14 Polarization: 54.87 SS G_CDS: 1.72 Total: 56.59 kcal Total: -80.74 3.55 -77.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030448378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.909 kcal (2) G-P(sol) polarization free energy of solvation -80.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds