Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00114 * 2 1 4 4 H 1.48502 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47113 * 300.00160 * 3 2 1 6 6 H 1.48496 * 109.46678 * 60.00314 * 3 2 1 7 7 C 1.38808 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49955 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11900 * 155.36128 * 10 9 7 12 12 N 1.46497 * 113.74033 * 137.95851 * 11 10 9 13 13 C 1.34777 * 120.00215 * 156.92727 * 12 11 10 14 14 O 1.21576 * 119.99495 * 359.97438 * 13 12 11 15 15 C 1.47703 * 120.00387 * 179.97438 * 13 12 11 16 16 C 1.41505 * 126.52166 * 180.29539 * 15 13 12 17 17 C 1.35362 * 105.50435 * 180.13171 * 16 15 13 18 18 N 1.35039 * 107.22755 * 359.60377 * 17 16 15 19 19 C 1.46499 * 124.88325 * 180.22827 * 18 17 16 20 20 C 1.53001 * 109.47023 * 124.99986 * 19 18 17 21 21 F 1.39894 * 109.47276 * 60.00221 * 20 19 18 22 22 F 1.39908 * 109.46908 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47076 * 299.99748 * 20 19 18 24 24 N 1.28462 * 110.23188 * 0.26001 * 18 17 16 25 25 C 1.47812 * 134.45217 * 359.86866 * 9 7 2 26 26 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.76313 * 41.05914 * 10 9 7 28 28 H 1.08994 * 113.77307 * 269.66761 * 10 9 7 29 29 H 1.09004 * 113.73779 * 269.15831 * 11 10 9 30 30 H 0.97003 * 119.99867 * 336.91786 * 12 11 10 31 31 H 1.07997 * 127.24463 * 0.03870 * 16 15 13 32 32 H 1.08002 * 126.38846 * 179.87126 * 17 16 15 33 33 H 1.08997 * 109.47003 * 245.00279 * 19 18 17 34 34 H 1.09006 * 109.47328 * 5.00326 * 19 18 17 35 35 H 1.09004 * 113.77091 * 90.37927 * 25 9 7 36 36 H 1.09000 * 113.83927 * 318.92055 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7200 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 7 -0.3333 -5.2614 0.0969 13 6 -1.2728 -5.8934 0.8280 14 8 -1.5549 -5.4860 1.9382 15 6 -1.9595 -7.0810 0.2805 16 6 -2.9652 -7.8425 0.9217 17 6 -3.2884 -8.8241 0.0475 18 7 -2.5243 -8.6481 -1.0519 19 6 -2.5649 -9.4971 -2.2451 20 6 -2.8250 -8.6305 -3.4790 21 9 -1.7994 -7.6884 -3.6118 22 9 -2.8632 -9.4413 -4.6186 23 9 -4.0496 -7.9697 -3.3350 24 7 -1.7563 -7.6295 -0.9008 25 6 -0.1058 -2.7571 0.0024 26 1 -0.4850 0.8400 -0.0004 27 1 2.5628 -4.0327 0.6530 28 1 1.8311 -4.2347 -0.9992 29 1 0.3607 -4.0646 1.7296 30 1 -0.1080 -5.5865 -0.7888 31 1 -3.3852 -7.6764 1.9027 32 1 -4.0236 -9.6006 0.1991 33 1 -1.6108 -10.0120 -2.3573 34 1 -3.3641 -10.2312 -2.1418 35 1 -0.5320 -2.8718 -0.9943 36 1 -0.7184 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030487967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -40.287836 kcal Electronic energy + Delta-G solvation = -26257.563883 eV Core-core repulsion = 21752.241062 eV Total energy + Delta-G solvation = -4505.322821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.56481 -48.13775 -47.96527 -42.93441 -39.28528 -37.40409 -34.54534 -33.46977 -31.81619 -30.95408 -29.54049 -27.42312 -25.03543 -24.76964 -23.49745 -22.21241 -21.84527 -19.94295 -19.54736 -19.15624 -18.96102 -18.46610 -17.53615 -16.73874 -16.58915 -15.94003 -15.55070 -14.99300 -14.92700 -14.88469 -14.46639 -14.35995 -14.16455 -14.11215 -14.09455 -13.97492 -13.76636 -13.47654 -13.22153 -12.65259 -12.52795 -11.85420 -11.41828 -11.40082 -11.12793 -10.85711 -10.75363 -10.39361 -10.02775 -9.75296 -9.57198 -9.49212 -9.39081 -8.77517 -8.38207 -6.87628 -5.73284 -3.07257 1.26949 1.66927 1.92857 2.17995 3.12072 3.29092 3.41259 3.45053 3.49647 3.50525 3.59620 3.65965 4.05687 4.26967 4.41913 4.47156 4.56456 5.03367 5.21707 5.42121 5.52484 5.56244 5.62706 6.03105 6.16462 6.26883 6.29151 6.46962 6.60614 6.80071 7.28742 7.38373 7.51080 7.61944 7.96604 8.00485 8.54083 9.06638 9.72989 10.59905 11.43517 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002902 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.138090 B = 9644.842458 C =10484.055582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.224 4.224 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.699 5.699 13 C 0.598 3.402 14 O -0.533 6.533 15 C 0.009 3.991 16 C -0.171 4.171 17 C -0.012 4.012 18 N -0.301 5.301 19 C 0.085 3.915 20 C 0.445 3.555 21 F -0.159 7.159 22 F -0.175 7.175 23 F -0.176 7.176 24 N -0.256 5.256 25 C 0.154 3.846 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.403 0.597 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.030 0.970 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -26.120 -5.319 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.352 4.352 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.349 5.349 13 C 0.381 3.619 14 O -0.407 6.407 15 C -0.153 4.153 16 C -0.199 4.199 17 C -0.152 4.152 18 N -0.090 5.090 19 C -0.038 4.038 20 C 0.390 3.610 21 F -0.140 7.140 22 F -0.157 7.157 23 F -0.157 7.157 24 N -0.090 5.090 25 C 0.028 3.972 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.131 0.869 30 H 0.238 0.762 31 H 0.186 0.814 32 H 0.203 0.797 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.047 0.953 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.953 -25.382 -5.603 27.182 hybrid contribution -0.089 0.663 -0.253 0.715 sum -8.042 -24.719 -5.857 26.646 Atomic orbital electron populations 1.69843 1.05038 1.25336 1.56222 1.24821 0.95690 0.97627 1.02233 0.86019 0.78693 0.83604 0.77261 1.20420 1.21743 1.21630 1.19031 0.90269 0.81605 1.44280 0.89988 1.45731 1.02428 0.99167 1.86066 1.22866 0.94534 0.86814 0.97148 1.23984 0.93438 0.83985 0.99993 1.46032 1.38760 1.30253 1.19844 1.16878 0.79498 0.80825 0.84722 1.90806 1.64552 1.65880 1.19498 1.22326 1.01321 0.99716 0.91976 1.21885 1.00062 0.95746 1.02159 1.22888 1.00908 1.03748 0.87704 1.44917 1.29033 1.21874 1.13175 1.23032 1.09489 0.91407 0.79904 1.20457 0.75262 0.80322 0.84992 1.93327 1.58391 1.66195 1.96093 1.93237 1.96281 1.72765 1.53379 1.93256 1.44540 1.82219 1.95688 1.73680 1.15478 0.99884 1.19927 1.22725 0.88139 0.89013 0.97335 0.93595 0.93142 0.94603 0.86921 0.76233 0.81420 0.79659 0.84386 0.83499 0.95251 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.03 11.39 55.49 0.63 -27.40 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.61 -16.05 3.70 -177.87 -0.66 -16.71 16 10 C 0.11 2.36 8.69 -2.97 -0.03 2.33 16 11 C 0.09 1.86 4.40 -70.14 -0.31 1.55 16 12 N -0.70 -12.11 5.37 -56.32 -0.30 -12.41 16 13 C 0.60 10.49 7.82 -12.39 -0.10 10.39 16 14 O -0.53 -10.99 16.55 5.30 0.09 -10.91 16 15 C 0.01 0.13 7.13 -82.76 -0.59 -0.46 16 16 C -0.17 -1.90 10.81 -39.36 -0.43 -2.32 16 17 C -0.01 -0.09 11.40 -17.17 -0.20 -0.29 16 18 N -0.30 -2.60 3.33 -61.33 -0.20 -2.80 16 19 C 0.09 0.37 6.41 -4.04 -0.03 0.34 16 20 C 0.45 3.40 3.26 37.16 0.12 3.52 16 21 F -0.16 -1.73 16.21 2.25 0.04 -1.70 16 22 F -0.18 -1.21 17.32 2.25 0.04 -1.18 16 23 F -0.18 -1.70 17.24 2.25 0.04 -1.66 16 24 N -0.26 -3.20 10.47 33.42 0.35 -2.85 16 25 C 0.15 3.85 7.33 -2.83 -0.02 3.83 16 26 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.11 2.44 7.51 -51.93 -0.39 2.05 16 30 H 0.40 6.27 8.44 -40.82 -0.34 5.93 16 31 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.14 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.15 0.01 8.04 -51.93 -0.42 -0.41 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 2.19 7.17 -51.93 -0.37 1.82 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -36.64 331.85 -5.43 -42.07 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.60 Total: 1.01 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.83 Total: 12.00 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.18 Total: -62.17 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.11 Total: -4.54 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.64 -5.43 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030487967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.782 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds