Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00114 * 2 1 4 4 H 1.48502 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47113 * 300.00160 * 3 2 1 6 6 H 1.48496 * 109.46678 * 60.00314 * 3 2 1 7 7 C 1.38808 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49955 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11900 * 155.36128 * 10 9 7 12 12 N 1.46497 * 113.74033 * 137.95851 * 11 10 9 13 13 C 1.34777 * 120.00215 * 156.92727 * 12 11 10 14 14 O 1.21576 * 119.99495 * 359.97438 * 13 12 11 15 15 C 1.47703 * 120.00387 * 179.97438 * 13 12 11 16 16 C 1.41505 * 126.52166 * 180.29539 * 15 13 12 17 17 C 1.35362 * 105.50435 * 180.13171 * 16 15 13 18 18 N 1.35039 * 107.22755 * 359.60377 * 17 16 15 19 19 C 1.46499 * 124.88325 * 180.22827 * 18 17 16 20 20 C 1.53001 * 109.47023 * 124.99986 * 19 18 17 21 21 F 1.39894 * 109.47276 * 60.00221 * 20 19 18 22 22 F 1.39908 * 109.46908 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47076 * 299.99748 * 20 19 18 24 24 N 1.28462 * 110.23188 * 0.26001 * 18 17 16 25 25 C 1.47812 * 134.45217 * 359.86866 * 9 7 2 26 26 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 27 27 H 1.09001 * 113.76313 * 41.05914 * 10 9 7 28 28 H 1.08994 * 113.77307 * 269.66761 * 10 9 7 29 29 H 1.09004 * 113.73779 * 269.15831 * 11 10 9 30 30 H 0.97003 * 119.99867 * 336.91786 * 12 11 10 31 31 H 1.07997 * 127.24463 * 0.03870 * 16 15 13 32 32 H 1.08002 * 126.38846 * 179.87126 * 17 16 15 33 33 H 1.08997 * 109.47003 * 245.00279 * 19 18 17 34 34 H 1.09006 * 109.47328 * 5.00326 * 19 18 17 35 35 H 1.09004 * 113.77091 * 90.37927 * 25 9 7 36 36 H 1.09000 * 113.83927 * 318.92055 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7200 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 7 -0.3333 -5.2614 0.0969 13 6 -1.2728 -5.8934 0.8280 14 8 -1.5549 -5.4860 1.9382 15 6 -1.9595 -7.0810 0.2805 16 6 -2.9652 -7.8425 0.9217 17 6 -3.2884 -8.8241 0.0475 18 7 -2.5243 -8.6481 -1.0519 19 6 -2.5649 -9.4971 -2.2451 20 6 -2.8250 -8.6305 -3.4790 21 9 -1.7994 -7.6884 -3.6118 22 9 -2.8632 -9.4413 -4.6186 23 9 -4.0496 -7.9697 -3.3350 24 7 -1.7563 -7.6295 -0.9008 25 6 -0.1058 -2.7571 0.0024 26 1 -0.4850 0.8400 -0.0004 27 1 2.5628 -4.0327 0.6530 28 1 1.8311 -4.2347 -0.9992 29 1 0.3607 -4.0646 1.7296 30 1 -0.1080 -5.5865 -0.7888 31 1 -3.3852 -7.6764 1.9027 32 1 -4.0236 -9.6006 0.1991 33 1 -1.6108 -10.0120 -2.3573 34 1 -3.3641 -10.2312 -2.1418 35 1 -0.5320 -2.8718 -0.9943 36 1 -0.7184 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030487967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -67.654535 kcal Electronic energy + Delta-G solvation = -26258.750592 eV Core-core repulsion = 21752.241062 eV Total energy + Delta-G solvation = -4506.509530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.18079 -48.73310 -48.65435 -43.71102 -40.83697 -39.13226 -35.30187 -35.06684 -33.75726 -31.77185 -30.37131 -29.31232 -26.65543 -26.16928 -24.76075 -23.48564 -22.57316 -21.36953 -21.07294 -19.77102 -19.61235 -19.08328 -18.79729 -18.50934 -17.53304 -17.22864 -16.99790 -16.54509 -15.79885 -15.71674 -15.55179 -15.51339 -15.26745 -15.08894 -14.84261 -14.78665 -14.76857 -14.60776 -14.27676 -13.77652 -13.61731 -13.34569 -13.24655 -13.13062 -12.84206 -12.66969 -12.29830 -11.97929 -11.90959 -11.55931 -11.24062 -10.91549 -10.42524 -10.15997 -9.95934 -8.99684 -7.92537 -5.28847 0.38572 1.03141 1.16693 1.45372 1.47748 1.58141 1.65721 2.11113 2.34537 2.49356 2.61124 2.87326 3.07909 3.23648 3.35749 3.44163 3.81315 3.83303 3.92991 4.05022 4.18224 4.32616 4.48914 4.71346 4.71855 4.75337 4.87827 5.11364 5.20890 5.26957 5.45799 5.64012 5.71416 5.86892 6.43045 6.79764 6.86587 7.16685 7.56654 8.49486 9.24614 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002902 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.138090 B = 9644.842458 C =10484.055582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.093 0.907 9 N -0.637 5.637 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.692 5.692 13 C 0.597 3.403 14 O -0.573 6.573 15 C -0.027 4.027 16 C -0.198 4.198 17 C 0.024 3.976 18 N -0.294 5.294 19 C 0.085 3.915 20 C 0.437 3.563 21 F -0.185 7.185 22 F -0.171 7.171 23 F -0.191 7.191 24 N -0.273 5.273 25 C 0.152 3.848 26 H 0.249 0.751 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.413 0.587 31 H 0.169 0.831 32 H 0.243 0.757 33 H 0.166 0.834 34 H 0.202 0.798 35 H 0.020 0.980 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -29.282 -6.122 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.110 0.890 9 N -0.364 5.364 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.343 5.343 13 C 0.382 3.618 14 O -0.451 6.451 15 C -0.187 4.187 16 C -0.226 4.226 17 C -0.117 4.117 18 N -0.083 5.083 19 C -0.036 4.036 20 C 0.382 3.618 21 F -0.166 7.166 22 F -0.153 7.153 23 F -0.173 7.173 24 N -0.108 5.108 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.250 0.750 31 H 0.186 0.814 32 H 0.260 0.740 33 H 0.183 0.817 34 H 0.220 0.780 35 H 0.038 0.962 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.778 -28.601 -6.438 30.331 hybrid contribution -0.209 1.472 -0.108 1.491 sum -7.987 -27.129 -6.546 29.028 Atomic orbital electron populations 1.70061 1.06769 1.25692 1.57952 1.25763 0.96582 1.01338 1.02645 0.84904 0.78299 0.78800 0.76649 1.18399 1.21907 1.21924 1.19505 0.91049 0.82780 1.43029 0.88964 1.46061 1.03156 1.00854 1.86331 1.22991 0.94977 0.83615 0.98626 1.23290 0.93224 0.83290 0.98899 1.45802 1.38884 1.29252 1.20338 1.17376 0.78786 0.81485 0.84115 1.90769 1.65656 1.67362 1.21263 1.21856 1.03340 0.99798 0.93719 1.22098 1.00278 0.96934 1.03304 1.23621 0.99631 1.02847 0.85584 1.45343 1.27595 1.20777 1.14548 1.23621 1.13264 0.90344 0.76366 1.21003 0.74074 0.80172 0.86504 1.93277 1.59479 1.67520 1.96340 1.93244 1.96181 1.72325 1.53507 1.93226 1.45466 1.82773 1.95814 1.73601 1.16791 1.01339 1.19095 1.22585 0.87512 0.91056 0.96326 0.94254 0.91155 0.92095 0.88208 0.75001 0.81390 0.74035 0.81656 0.78049 0.96173 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.72 11.39 21.65 0.25 -60.47 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.99 47.12 29.55 68.60 2.03 49.15 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.65 10.70 84.03 0.90 -12.75 16 8 H 0.09 5.01 7.83 -2.91 -0.02 4.98 16 9 N -0.64 -34.27 3.70 -716.66 -2.65 -36.93 16 10 C 0.12 5.06 8.69 86.49 0.75 5.81 16 11 C 0.12 5.00 4.40 46.75 0.21 5.21 16 12 N -0.69 -24.48 5.37 -450.38 -2.42 -26.90 16 13 C 0.60 21.59 7.82 86.74 0.68 22.27 16 14 O -0.57 -24.78 16.55 -3.95 -0.07 -24.84 16 15 C -0.03 -0.75 7.13 42.45 0.30 -0.45 16 16 C -0.20 -4.10 10.81 22.41 0.24 -3.86 16 17 C 0.02 0.26 11.40 83.54 0.95 1.21 16 18 N -0.29 -4.00 3.33 -347.94 -1.16 -5.15 16 19 C 0.09 0.34 6.41 86.38 0.55 0.89 16 20 C 0.44 5.58 3.26 71.98 0.23 5.81 16 21 F -0.18 -3.85 16.21 44.97 0.73 -3.12 16 22 F -0.17 -1.94 17.32 44.97 0.78 -1.16 16 23 F -0.19 -3.34 17.24 44.97 0.78 -2.56 16 24 N -0.27 -6.39 10.47 -48.18 -0.50 -6.89 16 25 C 0.15 7.95 7.33 86.45 0.63 8.59 16 26 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 29 H 0.10 4.50 7.51 -2.39 -0.02 4.48 16 30 H 0.41 12.89 8.44 -92.71 -0.78 12.11 16 31 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 33 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.20 -1.39 8.04 -2.38 -0.02 -1.40 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 2.21 7.17 -2.39 -0.02 2.20 16 Total: -1.00 -85.56 331.85 4.04 -81.51 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.37 Total: 8.34 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 5.92 Total: 29.03 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -6.49 Total: -136.34 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.84 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 2.28 Total: -6.84 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -85.56 4.04 -81.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030487967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.857 kcal (2) G-P(sol) polarization free energy of solvation -85.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds