Wall clock time and date at job start Tue Mar 31 2020 12:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34263 * 126.29191 * 2 1 4 4 H 0.97000 * 125.75368 * 359.97438 * 3 2 1 5 5 N 1.39934 * 108.49248 * 180.24320 * 3 2 1 6 6 C 1.30451 * 108.89534 * 359.75323 * 5 3 2 7 7 C 1.50703 * 125.98665 * 180.02562 * 6 5 3 8 8 F 1.39900 * 109.47220 * 269.95441 * 7 6 5 9 9 F 1.39901 * 109.47262 * 29.95681 * 7 6 5 10 10 F 1.39895 * 109.46887 * 149.95801 * 7 6 5 11 11 C 1.38046 * 126.29257 * 179.82308 * 2 1 3 12 12 C 1.47427 * 126.41188 * 0.02562 * 11 2 1 13 13 O 1.21607 * 120.00095 * 269.70889 * 12 11 2 14 14 N 1.34775 * 120.00007 * 89.71421 * 12 11 2 15 15 C 1.46505 * 119.99991 * 179.97438 * 14 12 11 16 16 C 1.53490 * 114.20790 * 155.00236 * 15 14 12 17 17 N 1.47070 * 87.98876 * 87.71517 * 16 15 14 18 18 C 1.36934 * 136.05817 * 207.08545 * 17 16 15 19 19 H 1.08005 * 119.99573 * 6.82234 * 18 17 16 20 20 C 1.38812 * 120.00132 * 186.81781 * 18 17 16 21 21 N 1.31619 * 120.00188 * 172.35261 * 20 18 17 22 22 Si 1.86795 * 119.99659 * 352.35585 * 20 18 17 23 23 H 1.48504 * 109.46944 * 175.34344 * 22 20 18 24 24 H 1.48501 * 109.47182 * 295.33975 * 22 20 18 25 25 H 1.48493 * 109.47635 * 55.34345 * 22 20 18 26 26 C 1.47069 * 87.88184 * 27.34019 * 17 16 15 27 27 H 1.08995 * 109.46640 * 270.17901 * 1 2 3 28 28 H 1.08996 * 109.47015 * 30.18137 * 1 2 3 29 29 H 1.09005 * 109.46936 * 150.17896 * 1 2 3 30 30 H 0.96998 * 120.00057 * 359.97438 * 14 12 11 31 31 H 1.08996 * 113.28128 * 21.92942 * 15 14 12 32 32 H 1.09004 * 113.46660 * 332.93395 * 16 15 14 33 33 H 1.09000 * 113.46910 * 202.49923 * 16 15 14 34 34 H 0.97004 * 119.99505 * 4.89088 * 21 20 18 35 35 H 1.09000 * 113.46464 * 87.43721 * 26 17 16 36 36 H 1.08993 * 113.46684 * 217.87421 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 -0.0004 5 7 3.6341 0.6544 -0.0056 6 6 3.6590 -0.6498 -0.0037 7 6 4.8952 -1.5119 -0.0076 8 9 5.2714 -1.7816 -1.3278 9 9 5.9342 -0.8403 0.6455 10 9 4.6274 -2.7141 0.6557 11 6 2.3241 -1.1127 0.0034 12 6 1.8858 -2.5203 0.0073 13 8 1.7098 -3.0994 1.0619 14 7 1.6803 -3.1652 -1.1582 15 6 1.2453 -4.5642 -1.1544 16 6 0.4877 -4.9912 -2.4191 17 7 1.7874 -5.3188 -3.0245 18 6 2.2970 -5.3774 -4.2941 19 1 1.7041 -5.0368 -5.1301 20 6 3.5756 -5.8743 -4.5065 21 7 4.0095 -6.0718 -5.7333 22 14 4.6803 -6.2628 -3.0512 23 1 5.9400 -6.8811 -3.5371 24 1 4.9943 -5.0093 -2.3195 25 1 3.9850 -7.2069 -2.1399 26 6 2.2970 -5.5622 -1.6665 27 1 -0.3632 0.0032 1.0276 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5111 30 1 1.8205 -2.7032 -1.9995 31 1 0.7646 -4.8634 -0.2230 32 1 -0.0272 -4.1684 -2.9153 33 1 -0.1527 -5.8603 -2.2689 34 1 3.4642 -5.8042 -6.4896 35 1 2.1336 -6.5819 -1.3179 36 1 3.3235 -5.2260 -1.5214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030688317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:00 Heat of formation + Delta-G solvation = -42.030222 kcal Electronic energy + Delta-G solvation = -27889.112856 eV Core-core repulsion = 23383.714480 eV Total energy + Delta-G solvation = -4505.398377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.13564 -47.67038 -47.61390 -42.00180 -39.59801 -37.84153 -33.65370 -33.48661 -32.32237 -31.69417 -28.32337 -27.53629 -26.88489 -25.37930 -23.66570 -22.02910 -21.61190 -20.11622 -19.52434 -18.68531 -18.49909 -17.81480 -17.47404 -17.45258 -16.74726 -16.08053 -15.47350 -14.97062 -14.77192 -14.47758 -14.37414 -14.04080 -14.00104 -13.81875 -13.74431 -13.73328 -13.43708 -13.35319 -13.32564 -13.07318 -12.93637 -12.37516 -12.02983 -11.55002 -11.33854 -11.03048 -10.53119 -10.39376 -10.30812 -9.96894 -9.48083 -9.20083 -9.13687 -8.85610 -8.55339 -7.16059 -6.31498 -3.23392 1.06582 1.60782 1.78287 2.53931 2.66172 3.32989 3.48439 3.51221 3.56992 3.69540 3.79908 4.20203 4.31109 4.53224 4.61851 4.70966 4.73240 4.90522 5.00633 5.14297 5.30353 5.35508 5.43203 5.54938 5.84261 5.92831 6.17702 6.22884 6.33604 6.41281 6.52830 6.79253 6.93727 7.08661 7.74120 8.23095 8.34749 8.97114 9.50264 10.35231 11.21010 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.005671 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.597924 B = 4935.859209 C = 5906.013270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.140 3.860 3 N -0.442 5.442 4 H 0.450 0.550 5 N -0.233 5.233 6 C 0.028 3.972 7 C 0.549 3.451 8 F -0.157 7.157 9 F -0.167 7.167 10 F -0.154 7.154 11 C -0.239 4.239 12 C 0.590 3.410 13 O -0.527 6.527 14 N -0.684 5.684 15 C 0.097 3.903 16 C 0.116 3.884 17 N -0.627 5.627 18 C -0.308 4.308 19 H 0.082 0.918 20 C -0.020 4.020 21 N -0.932 5.932 22 Si 1.065 2.935 23 H -0.295 1.295 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.084 3.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.408 0.592 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 15.792 13.423 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.008 3.992 3 N -0.151 5.151 4 H 0.296 0.704 5 N -0.057 5.057 6 C -0.141 4.141 7 C 0.492 3.508 8 F -0.139 7.139 9 F -0.148 7.148 10 F -0.135 7.135 11 C -0.254 4.254 12 C 0.373 3.627 13 O -0.403 6.403 14 N -0.333 5.333 15 C -0.009 4.009 16 C -0.012 4.012 17 N -0.357 5.357 18 C -0.434 4.434 19 H 0.100 0.900 20 C -0.219 4.219 21 N -0.574 5.574 22 Si 0.897 3.103 23 H -0.223 1.223 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.042 4.042 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.243 0.757 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.104 15.741 14.314 21.880 hybrid contribution -1.742 0.520 -0.972 2.062 sum -6.846 16.261 13.342 22.120 Atomic orbital electron populations 1.20648 0.85185 1.05182 1.04737 1.21474 0.95034 0.85717 0.96969 1.46019 1.03174 1.08963 1.56971 0.70354 1.77102 0.96842 1.10384 1.21330 1.22059 0.93422 0.92735 1.05873 1.16909 0.80889 0.78053 0.74919 1.93328 1.91796 1.93953 1.34793 1.93231 1.60150 1.80131 1.81299 1.93314 1.93617 1.46039 1.80571 1.19764 0.90883 0.94935 1.19772 1.17092 0.77343 0.84028 0.84232 1.90786 1.50948 1.67517 1.31018 1.45506 1.67082 1.12472 1.08249 1.22541 0.97935 0.80984 0.99454 1.22692 0.90634 0.97731 0.90098 1.46103 1.06832 1.81467 1.01254 1.20077 1.00201 1.41868 0.81250 0.89987 1.25682 0.96074 0.97846 1.02337 1.70937 1.41998 1.46994 0.97514 0.83768 0.76038 0.76422 0.74024 1.22270 1.21794 1.21331 1.23274 0.97911 0.96752 0.86313 0.88721 0.89789 0.88529 0.75652 0.87600 0.93309 0.92990 0.92963 0.92592 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.25 36.01 0.37 -0.20 16 2 C 0.14 1.34 7.29 -81.60 -0.60 0.75 16 3 N -0.44 -3.81 7.29 33.86 0.25 -3.56 16 4 H 0.45 1.91 8.96 -182.72 -1.64 0.27 16 5 N -0.23 -2.98 12.57 33.90 0.43 -2.56 16 6 C 0.03 0.41 6.60 -82.02 -0.54 -0.14 16 7 C 0.55 8.87 3.51 36.01 0.13 8.99 16 8 F -0.16 -2.77 17.30 2.25 0.04 -2.73 16 9 F -0.17 -2.51 17.25 2.25 0.04 -2.47 16 10 F -0.15 -2.72 15.91 2.25 0.04 -2.68 16 11 C -0.24 -3.31 5.84 -105.07 -0.61 -3.92 16 12 C 0.59 9.50 5.91 -12.52 -0.07 9.43 16 13 O -0.53 -9.83 16.69 5.27 0.09 -9.74 16 14 N -0.68 -11.16 5.40 -54.56 -0.29 -11.46 16 15 C 0.10 1.68 4.61 -67.67 -0.31 1.37 16 16 C 0.12 2.10 8.44 -8.51 -0.07 2.02 16 17 N -0.63 -14.83 3.70 -184.61 -0.68 -15.51 16 18 C -0.31 -8.67 11.08 -15.06 -0.17 -8.83 16 19 H 0.08 2.41 8.05 -52.48 -0.42 1.99 16 20 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 21 N -0.93 -29.46 13.70 55.49 0.76 -28.70 16 22 Si 1.06 27.59 25.13 -169.99 -4.27 23.32 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.29 -7.29 6.64 56.52 0.38 -6.91 16 25 H -0.29 -6.93 6.14 56.52 0.35 -6.59 16 26 C 0.08 1.79 5.54 -8.37 -0.05 1.75 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.63 7.96 -51.93 -0.41 0.22 16 30 H 0.41 6.58 8.75 -40.82 -0.36 6.22 16 31 H 0.11 1.69 7.45 -51.93 -0.39 1.30 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 35 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 36 H 0.06 1.28 4.65 -51.93 -0.24 1.04 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -35.82 324.24 -5.53 -41.36 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.78 Total: -0.67 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -2.02 Total: 10.52 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.46 Total: -61.79 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.11 Total: -7.89 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.27 Total: 23.32 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.82 -5.53 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030688317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.672 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds