Wall clock time and date at job start Tue Mar 31 2020 12:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34263 * 126.29191 * 2 1 4 4 H 0.97000 * 125.75368 * 359.97438 * 3 2 1 5 5 N 1.39934 * 108.49248 * 180.24320 * 3 2 1 6 6 C 1.30451 * 108.89534 * 359.75323 * 5 3 2 7 7 C 1.50703 * 125.98665 * 180.02562 * 6 5 3 8 8 F 1.39900 * 109.47220 * 269.95441 * 7 6 5 9 9 F 1.39901 * 109.47262 * 29.95681 * 7 6 5 10 10 F 1.39895 * 109.46887 * 149.95801 * 7 6 5 11 11 C 1.38046 * 126.29257 * 179.82308 * 2 1 3 12 12 C 1.47427 * 126.41188 * 0.02562 * 11 2 1 13 13 O 1.21607 * 120.00095 * 269.70889 * 12 11 2 14 14 N 1.34775 * 120.00007 * 89.71421 * 12 11 2 15 15 C 1.46505 * 119.99991 * 179.97438 * 14 12 11 16 16 C 1.53490 * 114.20790 * 155.00236 * 15 14 12 17 17 N 1.47070 * 87.98876 * 87.71517 * 16 15 14 18 18 C 1.36934 * 136.05817 * 207.08545 * 17 16 15 19 19 H 1.08005 * 119.99573 * 6.82234 * 18 17 16 20 20 C 1.38812 * 120.00132 * 186.81781 * 18 17 16 21 21 N 1.31619 * 120.00188 * 172.35261 * 20 18 17 22 22 Si 1.86795 * 119.99659 * 352.35585 * 20 18 17 23 23 H 1.48504 * 109.46944 * 175.34344 * 22 20 18 24 24 H 1.48501 * 109.47182 * 295.33975 * 22 20 18 25 25 H 1.48493 * 109.47635 * 55.34345 * 22 20 18 26 26 C 1.47069 * 87.88184 * 27.34019 * 17 16 15 27 27 H 1.08995 * 109.46640 * 270.17901 * 1 2 3 28 28 H 1.08996 * 109.47015 * 30.18137 * 1 2 3 29 29 H 1.09005 * 109.46936 * 150.17896 * 1 2 3 30 30 H 0.96998 * 120.00057 * 359.97438 * 14 12 11 31 31 H 1.08996 * 113.28128 * 21.92942 * 15 14 12 32 32 H 1.09004 * 113.46660 * 332.93395 * 16 15 14 33 33 H 1.09000 * 113.46910 * 202.49923 * 16 15 14 34 34 H 0.97004 * 119.99505 * 4.89088 * 21 20 18 35 35 H 1.09000 * 113.46464 * 87.43721 * 26 17 16 36 36 H 1.08993 * 113.46684 * 217.87421 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0822 0.0000 4 1 2.0027 2.0049 -0.0004 5 7 3.6341 0.6544 -0.0056 6 6 3.6590 -0.6498 -0.0037 7 6 4.8952 -1.5119 -0.0076 8 9 5.2714 -1.7816 -1.3278 9 9 5.9342 -0.8403 0.6455 10 9 4.6274 -2.7141 0.6557 11 6 2.3241 -1.1127 0.0034 12 6 1.8858 -2.5203 0.0073 13 8 1.7098 -3.0994 1.0619 14 7 1.6803 -3.1652 -1.1582 15 6 1.2453 -4.5642 -1.1544 16 6 0.4877 -4.9912 -2.4191 17 7 1.7874 -5.3188 -3.0245 18 6 2.2970 -5.3774 -4.2941 19 1 1.7041 -5.0368 -5.1301 20 6 3.5756 -5.8743 -4.5065 21 7 4.0095 -6.0718 -5.7333 22 14 4.6803 -6.2628 -3.0512 23 1 5.9400 -6.8811 -3.5371 24 1 4.9943 -5.0093 -2.3195 25 1 3.9850 -7.2069 -2.1399 26 6 2.2970 -5.5622 -1.6665 27 1 -0.3632 0.0032 1.0276 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5111 30 1 1.8205 -2.7032 -1.9995 31 1 0.7646 -4.8634 -0.2230 32 1 -0.0272 -4.1684 -2.9153 33 1 -0.1527 -5.8603 -2.2689 34 1 3.4642 -5.8042 -6.4896 35 1 2.1336 -6.5819 -1.3179 36 1 3.3235 -5.2260 -1.5214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030688317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:00 Heat of formation + Delta-G solvation = -70.698566 kcal Electronic energy + Delta-G solvation = -27890.356009 eV Core-core repulsion = 23383.714480 eV Total energy + Delta-G solvation = -4506.641529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.41336 -48.94667 -48.91704 -42.91505 -41.00968 -39.31396 -35.10256 -34.49087 -34.12619 -32.74395 -29.85461 -28.64219 -27.98654 -26.98972 -25.08189 -23.54853 -22.70066 -21.28908 -21.12912 -19.86546 -19.78084 -19.50824 -18.87882 -18.51292 -17.85117 -17.54699 -16.58783 -16.40503 -16.09016 -15.78642 -15.74816 -15.58942 -15.39815 -15.31225 -15.11645 -15.05007 -15.01699 -14.60941 -14.46378 -13.83219 -13.80160 -13.51926 -13.29511 -13.24609 -12.79638 -12.47254 -12.42917 -12.02174 -11.36569 -11.31107 -11.24499 -11.19143 -10.97168 -10.07213 -10.00819 -9.18016 -8.61002 -5.43239 0.18543 0.62605 0.84047 1.31998 1.39031 1.45329 1.62787 1.67095 2.11778 2.43737 2.50639 2.67408 2.97494 3.05780 3.26229 3.46277 3.57924 3.64796 3.83171 3.98021 4.31220 4.37676 4.49374 4.64800 4.67499 4.71188 4.74032 4.81557 4.93917 5.07178 5.22302 5.54631 5.77015 5.98090 6.06781 6.46103 6.72787 7.08804 7.35540 8.29419 8.94678 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.005671 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.597924 B = 4935.859209 C = 5906.013270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.172 3.828 3 N -0.415 5.415 4 H 0.471 0.529 5 N -0.248 5.248 6 C 0.011 3.989 7 C 0.544 3.456 8 F -0.172 7.172 9 F -0.164 7.164 10 F -0.167 7.167 11 C -0.277 4.277 12 C 0.599 3.401 13 O -0.554 6.554 14 N -0.685 5.685 15 C 0.120 3.880 16 C 0.122 3.878 17 N -0.656 5.656 18 C -0.279 4.279 19 H 0.060 0.940 20 C -0.079 4.079 21 N -0.974 5.974 22 Si 1.098 2.902 23 H -0.308 1.308 24 H -0.286 1.286 25 H -0.261 1.261 26 C 0.070 3.930 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.409 0.591 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.248 0.752 35 H 0.069 0.931 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 17.548 15.373 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.039 3.961 3 N -0.128 5.128 4 H 0.323 0.677 5 N -0.073 5.073 6 C -0.157 4.157 7 C 0.487 3.513 8 F -0.153 7.153 9 F -0.145 7.145 10 F -0.148 7.148 11 C -0.292 4.292 12 C 0.384 3.616 13 O -0.432 6.432 14 N -0.334 5.334 15 C 0.014 3.986 16 C -0.003 4.003 17 N -0.385 5.385 18 C -0.407 4.407 19 H 0.078 0.922 20 C -0.272 4.272 21 N -0.620 5.620 22 Si 0.927 3.073 23 H -0.236 1.236 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.056 4.056 27 H 0.130 0.870 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.244 0.756 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.597 17.549 16.309 25.133 hybrid contribution -1.124 0.108 -1.534 1.905 sum -8.721 17.657 14.775 24.620 Atomic orbital electron populations 1.20907 0.81866 1.06804 1.06252 1.21965 0.96490 0.84351 0.93323 1.46032 1.01707 1.10052 1.54960 0.67725 1.77030 0.99124 1.09404 1.21699 1.21808 0.92872 0.93292 1.07692 1.17141 0.81869 0.78049 0.74210 1.93290 1.92081 1.94120 1.35837 1.93226 1.60223 1.79897 1.81128 1.93275 1.93752 1.47048 1.80757 1.19702 0.91268 0.94825 1.23414 1.17292 0.76142 0.84744 0.83436 1.90763 1.52096 1.68471 1.31828 1.45554 1.67169 1.12087 1.08574 1.22322 0.95699 0.80637 0.99966 1.22892 0.88887 0.98989 0.89532 1.46163 1.10054 1.81754 1.00559 1.19975 0.99362 1.38459 0.82891 0.92174 1.26635 0.97982 0.99301 1.03276 1.71014 1.42554 1.50357 0.98073 0.83342 0.74551 0.76927 0.72491 1.23646 1.21389 1.18582 1.23527 0.98059 0.98649 0.85326 0.87032 0.86076 0.88981 0.75602 0.85271 0.91657 0.90509 0.94222 0.91364 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.25 71.24 0.73 0.05 16 2 C 0.17 2.71 7.29 42.14 0.31 3.02 16 3 N -0.42 -5.76 7.29 -46.79 -0.34 -6.10 16 4 H 0.47 2.02 8.96 -213.43 -1.91 0.10 16 5 N -0.25 -5.91 12.57 -46.67 -0.59 -6.50 16 6 C 0.01 0.30 6.60 43.51 0.29 0.59 16 7 C 0.54 17.66 3.51 71.24 0.25 17.91 16 8 F -0.17 -6.18 17.30 44.97 0.78 -5.40 16 9 F -0.16 -4.94 17.25 44.97 0.78 -4.17 16 10 F -0.17 -5.95 15.91 44.97 0.72 -5.23 16 11 C -0.28 -7.16 5.84 -20.15 -0.12 -7.27 16 12 C 0.60 18.22 5.91 86.66 0.51 18.73 16 13 O -0.55 -19.68 16.69 -4.05 -0.07 -19.75 16 14 N -0.68 -21.00 5.40 -444.78 -2.40 -23.41 16 15 C 0.12 3.83 4.61 45.55 0.21 4.04 16 16 C 0.12 4.05 8.44 83.17 0.70 4.75 16 17 N -0.66 -30.03 3.70 -738.00 -2.73 -32.75 16 18 C -0.28 -15.76 11.08 84.03 0.93 -14.83 16 19 H 0.06 3.60 8.05 -2.91 -0.02 3.58 16 20 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 21 N -0.97 -63.45 13.70 21.65 0.30 -63.15 16 22 Si 1.10 56.61 25.13 68.60 1.72 58.33 16 23 H -0.31 -16.36 7.11 99.48 0.71 -15.65 16 24 H -0.29 -14.36 6.64 99.48 0.66 -13.70 16 25 H -0.26 -12.13 6.14 99.48 0.61 -11.52 16 26 C 0.07 2.87 5.54 83.27 0.46 3.33 16 27 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 0.82 7.96 -2.38 -0.02 0.80 16 30 H 0.41 12.52 8.75 -92.71 -0.81 11.71 16 31 H 0.13 3.64 7.45 -2.39 -0.02 3.62 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.25 16.07 8.73 -92.71 -0.81 15.27 16 35 H 0.07 2.64 7.73 -2.39 -0.02 2.62 16 36 H 0.04 1.59 4.65 -2.39 -0.01 1.58 16 Total: -1.00 -80.22 324.24 1.18 -79.04 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -1.72 Total: 3.08 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 4.74 Total: 26.00 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.76 Total: -131.90 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.07 Total: -19.75 kcal Atomic # 9 Polarization: -17.07 SS G_CDS: 2.27 Total: -14.80 kcal Atomic # 14 Polarization: 56.61 SS G_CDS: 1.72 Total: 58.33 kcal Total: -80.22 1.18 -79.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030688317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.338 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds