Wall clock time and date at job start Tue Mar 31 2020 12:48:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34269 * 125.75250 * 2 1
4 4 C 1.38047 * 107.41302 * 180.11111 * 3 2 1
5 5 C 1.47432 * 126.41064 * 179.87502 * 4 3 2
6 6 O 1.21608 * 119.99684 * 179.69236 * 5 4 3
7 7 N 1.34775 * 119.99874 * 359.68229 * 5 4 3
8 8 C 1.46500 * 119.99438 * 180.02562 * 7 5 4
9 9 C 1.53498 * 114.20367 * 155.00573 * 8 7 5
10 10 N 1.47065 * 87.98675 * 87.51602 * 9 8 7
11 11 C 1.36935 * 136.05778 * 207.07950 * 10 9 8
12 12 H 1.07997 * 119.99961 * 6.77313 * 11 10 9
13 13 C 1.38812 * 119.99962 * 186.76980 * 11 10 9
14 14 N 1.31618 * 119.99992 * 172.26235 * 13 11 10
15 15 Si 1.86794 * 120.00220 * 352.26666 * 13 11 10
16 16 H 1.48493 * 109.47463 * 175.35996 * 15 13 11
17 17 H 1.48510 * 109.46810 * 295.35961 * 15 13 11
18 18 H 1.48498 * 109.47153 * 55.35226 * 15 13 11
19 19 C 1.47070 * 87.88470 * 27.34556 * 10 9 8
20 20 C 1.41288 * 107.17191 * 359.60828 * 4 3 2
21 21 C 1.50699 * 125.98778 * 180.23680 * 20 4 3
22 22 F 1.39910 * 109.46867 * 90.00267 * 21 20 4
23 23 F 1.39899 * 109.47402 * 209.99929 * 21 20 4
24 24 F 1.39900 * 109.47355 * 330.00677 * 21 20 4
25 25 N 1.30443 * 108.02653 * 0.24386 * 20 4 3
26 26 H 1.09007 * 109.46986 * 270.30637 * 1 2 3
27 27 H 1.08997 * 109.47242 * 30.30747 * 1 2 3
28 28 H 1.08996 * 109.46951 * 150.30696 * 1 2 3
29 29 H 1.07998 * 126.29137 * 359.96225 * 3 2 1
30 30 H 0.96999 * 120.00385 * 0.02562 * 7 5 4
31 31 H 1.09000 * 113.28874 * 21.93582 * 8 7 5
32 32 H 1.09003 * 113.46903 * 332.73508 * 9 8 7
33 33 H 1.09002 * 113.47097 * 202.29943 * 9 8 7
34 34 H 0.97005 * 119.99783 * 4.88000 * 14 13 11
35 35 H 1.08996 * 113.47141 * 87.43428 * 19 10 9
36 36 H 1.09002 * 113.46180 * 217.88172 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2495 1.0897 0.0000
4 6 3.5599 0.6553 -0.0026
5 6 4.7638 1.5062 -0.0061
6 8 5.8682 0.9970 -0.0024
7 7 4.6405 2.8483 -0.0135
8 6 5.8369 3.6937 -0.0176
9 6 5.6189 5.0899 -0.6170
10 7 5.2064 5.5427 0.7201
11 6 4.3913 6.5221 1.2215
12 1 3.7862 7.1159 0.5525
13 6 4.3428 6.7517 2.5896
14 7 3.6805 7.7872 3.0601
15 14 5.2176 5.5911 3.7631
16 1 5.1095 6.1139 5.1488
17 1 4.5893 4.2475 3.6905
18 1 6.6494 5.4891 3.3827
19 6 6.0599 4.4849 1.2819
20 6 3.5311 -0.7573 0.0051
21 6 4.7322 -1.6674 0.0106
22 9 5.1033 -1.9419 1.3313
23 9 4.4143 -2.8631 -0.6425
24 9 5.7941 -1.0422 -0.6518
25 7 2.2827 -1.1356 0.0065
26 1 -0.3633 0.0055 1.0277
27 1 -0.3633 0.8872 -0.5186
28 1 -0.3633 -0.8927 -0.5090
29 1 1.9166 2.1170 -0.0006
30 1 3.7596 3.2544 -0.0162
31 1 6.7250 3.1819 -0.3884
32 1 4.8166 5.1255 -1.3540
33 1 6.5373 5.5590 -0.9700
34 1 3.1679 8.3493 2.4581
35 1 7.0945 4.7944 1.4294
36 1 5.6332 4.0049 2.1626
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001031018506.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:48:32
Heat of formation + Delta-G solvation = -29.529177 kcal
Electronic energy + Delta-G solvation = -27208.830411 eV
Core-core repulsion = 22703.974121 eV
Total energy + Delta-G solvation = -4504.856291 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 318.104 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-50.03150 -47.62211 -47.42303 -41.91713 -39.58506 -37.83290 -34.17542 -33.56160
-32.28761 -30.82091 -28.70247 -27.85241 -25.75867 -25.40453 -23.45919 -22.33575
-21.26445 -20.41205 -19.57542 -18.45560 -18.37949 -18.10239 -17.52254 -17.23390
-16.21456 -16.14976 -15.82872 -15.06113 -14.66733 -14.47048 -14.32608 -14.26146
-13.96352 -13.80077 -13.68943 -13.60373 -13.55236 -13.44431 -13.17663 -13.11745
-12.91648 -12.36816 -12.03434 -11.53227 -11.40014 -11.05918 -10.59308 -10.34141
-10.22811 -9.79058 -9.52477 -9.26097 -9.20264 -8.92408 -8.51950 -7.22193
-6.38816 -3.30325 1.07382 1.37951 1.58272 2.64613 3.29921 3.37416
3.40239 3.43297 3.51985 3.62729 3.85425 4.28887 4.35755 4.40885
4.54142 4.65579 4.69009 4.81606 4.94203 4.96787 5.10281 5.15626
5.36840 5.54207 5.83711 5.92323 6.17749 6.21844 6.23308 6.29947
6.40094 6.80788 6.95897 7.03616 7.77181 8.16066 8.41953 8.90230
9.43309 10.29662 11.13738
Molecular weight = 318.10amu
Principal moments of inertia in cm(-1)
A = 0.016052 B = 0.004168 C = 0.003797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1743.951288 B = 6715.448976 C = 7372.461708
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.345 5.345
3 C 0.111 3.889
4 C -0.244 4.244
5 C 0.585 3.415
6 O -0.528 6.528
7 N -0.690 5.690
8 C 0.102 3.898
9 C 0.114 3.886
10 N -0.629 5.629
11 C -0.308 4.308
12 H 0.082 0.918
13 C -0.022 4.022
14 N -0.933 5.933
15 Si 1.070 2.930
16 H -0.296 1.296
17 H -0.294 1.294
18 H -0.286 1.286
19 C 0.084 3.916
20 C 0.035 3.965
21 C 0.554 3.446
22 F -0.168 7.168
23 F -0.175 7.175
24 F -0.134 7.134
25 N -0.244 5.244
26 H 0.088 0.912
27 H 0.100 0.900
28 H 0.098 0.902
29 H 0.199 0.801
30 H 0.402 0.598
31 H 0.107 0.893
32 H 0.049 0.951
33 H 0.053 0.947
34 H 0.260 0.740
35 H 0.056 0.944
36 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.787 -17.476 -8.856 20.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.124 5.124
3 C -0.040 4.040
4 C -0.259 4.259
5 C 0.371 3.629
6 O -0.405 6.405
7 N -0.339 5.339
8 C -0.005 4.005
9 C -0.013 4.013
10 N -0.358 5.358
11 C -0.434 4.434
12 H 0.100 0.900
13 C -0.221 4.221
14 N -0.575 5.575
15 Si 0.902 3.098
16 H -0.224 1.224
17 H -0.223 1.223
18 H -0.213 1.213
19 C -0.043 4.043
20 C -0.134 4.134
21 C 0.497 3.503
22 F -0.149 7.149
23 F -0.156 7.156
24 F -0.115 7.115
25 N -0.066 5.066
26 H 0.106 0.894
27 H 0.119 0.881
28 H 0.117 0.883
29 H 0.216 0.784
30 H 0.237 0.763
31 H 0.125 0.875
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.071 0.929
35 H 0.074 0.926
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -5.735 -18.884 -7.163 20.995
hybrid contribution -0.330 1.259 -1.508 1.992
sum -6.064 -17.626 -8.671 20.558
Atomic orbital electron populations
1.22204 0.72167 1.05677 1.04774 1.48418 1.07603 1.03166 1.53260
1.23330 0.89625 0.94354 0.96641 1.20162 0.93929 0.91923 1.19919
1.17091 0.87389 0.81793 0.76664 1.90856 1.26222 1.73321 1.50138
1.45254 1.10028 1.04608 1.74050 1.22478 0.88048 0.90934 0.99022
1.22714 0.98238 0.89923 0.90424 1.46139 1.50176 1.37953 1.01539
1.20095 1.18767 1.11507 0.93012 0.89998 1.25696 1.01712 0.99468
0.95203 1.70936 1.33888 1.14790 1.37913 0.83692 0.76065 0.74180
0.75821 1.22350 1.22267 1.21281 1.23287 0.95692 0.88991 0.96288
1.22154 0.92964 0.93356 1.04885 1.16804 0.81556 0.77244 0.74688
1.93239 1.92147 1.93841 1.35672 1.93212 1.92924 1.48094 1.81394
1.93406 1.56613 1.81307 1.80214 1.77141 0.99949 1.08005 1.21544
0.89373 0.88120 0.88343 0.78376 0.76270 0.87490 0.93305 0.92981
0.92930 0.92632 0.92776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.41 11.44 59.85 0.68 1.09 16
2 N -0.34 -3.30 3.98 -67.60 -0.27 -3.57 16
3 C 0.11 1.11 10.99 -16.56 -0.18 0.93 16
4 C -0.24 -3.36 6.09 -105.06 -0.64 -4.00 16
5 C 0.58 9.41 7.77 -12.52 -0.10 9.32 16
6 O -0.53 -9.92 12.85 5.27 0.07 -9.85 16
7 N -0.69 -10.75 5.39 -54.55 -0.29 -11.04 16
8 C 0.10 1.74 4.61 -67.67 -0.31 1.42 16
9 C 0.11 2.05 8.44 -8.51 -0.07 1.98 16
10 N -0.63 -14.39 3.70 -184.60 -0.68 -15.07 16
11 C -0.31 -8.35 11.08 -15.06 -0.17 -8.52 16
12 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16
13 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16
14 N -0.93 -28.57 13.70 55.49 0.76 -27.81 16
15 Si 1.07 26.54 25.13 -169.99 -4.27 22.27 16
16 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16
17 H -0.29 -6.98 6.65 56.52 0.38 -6.60 16
18 H -0.29 -6.71 6.13 56.52 0.35 -6.37 16
19 C 0.08 1.74 5.54 -8.36 -0.05 1.69 16
20 C 0.04 0.50 6.60 -82.02 -0.54 -0.04 16
21 C 0.55 8.15 3.37 36.00 0.12 8.27 16
22 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16
23 F -0.17 -2.39 17.25 2.25 0.04 -2.35 16
24 F -0.13 -2.18 13.56 2.25 0.03 -2.15 16
25 N -0.24 -3.13 12.43 33.89 0.42 -2.71 16
26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
27 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16
28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16
29 H 0.20 1.31 7.46 -52.49 -0.39 0.92 16
30 H 0.40 5.65 7.68 -40.82 -0.31 5.33 16
31 H 0.11 1.74 7.45 -51.93 -0.39 1.35 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
34 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16
35 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16
36 H 0.05 1.20 4.65 -51.93 -0.24 0.95 16
LS Contribution 319.07 15.07 4.81 4.81
Total: -1.00 -35.32 319.07 -4.20 -39.52
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: -3.50 Total: -0.96 kcal
Atomic # 6 Polarization: 12.77 SS G_CDS: -1.35 Total: 11.42 kcal
Atomic # 7 Polarization: -60.13 SS G_CDS: -0.06 Total: -60.19 kcal
Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal
Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.01 kcal
Atomic # 14 Polarization: 26.54 SS G_CDS: -4.27 Total: 22.27 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -35.32 -4.20 -39.52 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031018506.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.993 kcal
(2) G-P(sol) polarization free energy of solvation -35.320 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds