Wall clock time and date at job start Tue Mar 31 2020 12:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34269 * 125.75250 * 2 1 4 4 C 1.38047 * 107.41302 * 180.11111 * 3 2 1 5 5 C 1.47432 * 126.41064 * 179.87502 * 4 3 2 6 6 O 1.21608 * 119.99684 * 179.69236 * 5 4 3 7 7 N 1.34775 * 119.99874 * 359.68229 * 5 4 3 8 8 C 1.46500 * 119.99438 * 180.02562 * 7 5 4 9 9 C 1.53498 * 114.20367 * 155.00573 * 8 7 5 10 10 N 1.47065 * 87.98675 * 87.51602 * 9 8 7 11 11 C 1.36935 * 136.05778 * 207.07950 * 10 9 8 12 12 H 1.07997 * 119.99961 * 6.77313 * 11 10 9 13 13 C 1.38812 * 119.99962 * 186.76980 * 11 10 9 14 14 N 1.31618 * 119.99992 * 172.26235 * 13 11 10 15 15 Si 1.86794 * 120.00220 * 352.26666 * 13 11 10 16 16 H 1.48493 * 109.47463 * 175.35996 * 15 13 11 17 17 H 1.48510 * 109.46810 * 295.35961 * 15 13 11 18 18 H 1.48498 * 109.47153 * 55.35226 * 15 13 11 19 19 C 1.47070 * 87.88470 * 27.34556 * 10 9 8 20 20 C 1.41288 * 107.17191 * 359.60828 * 4 3 2 21 21 C 1.50699 * 125.98778 * 180.23680 * 20 4 3 22 22 F 1.39910 * 109.46867 * 90.00267 * 21 20 4 23 23 F 1.39899 * 109.47402 * 209.99929 * 21 20 4 24 24 F 1.39900 * 109.47355 * 330.00677 * 21 20 4 25 25 N 1.30443 * 108.02653 * 0.24386 * 20 4 3 26 26 H 1.09007 * 109.46986 * 270.30637 * 1 2 3 27 27 H 1.08997 * 109.47242 * 30.30747 * 1 2 3 28 28 H 1.08996 * 109.46951 * 150.30696 * 1 2 3 29 29 H 1.07998 * 126.29137 * 359.96225 * 3 2 1 30 30 H 0.96999 * 120.00385 * 0.02562 * 7 5 4 31 31 H 1.09000 * 113.28874 * 21.93582 * 8 7 5 32 32 H 1.09003 * 113.46903 * 332.73508 * 9 8 7 33 33 H 1.09002 * 113.47097 * 202.29943 * 9 8 7 34 34 H 0.97005 * 119.99783 * 4.88000 * 14 13 11 35 35 H 1.08996 * 113.47141 * 87.43428 * 19 10 9 36 36 H 1.09002 * 113.46180 * 217.88172 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0897 0.0000 4 6 3.5599 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0061 6 8 5.8682 0.9970 -0.0024 7 7 4.6405 2.8483 -0.0135 8 6 5.8369 3.6937 -0.0176 9 6 5.6189 5.0899 -0.6170 10 7 5.2064 5.5427 0.7201 11 6 4.3913 6.5221 1.2215 12 1 3.7862 7.1159 0.5525 13 6 4.3428 6.7517 2.5896 14 7 3.6805 7.7872 3.0601 15 14 5.2176 5.5911 3.7631 16 1 5.1095 6.1139 5.1488 17 1 4.5893 4.2475 3.6905 18 1 6.6494 5.4891 3.3827 19 6 6.0599 4.4849 1.2819 20 6 3.5311 -0.7573 0.0051 21 6 4.7322 -1.6674 0.0106 22 9 5.1033 -1.9419 1.3313 23 9 4.4143 -2.8631 -0.6425 24 9 5.7941 -1.0422 -0.6518 25 7 2.2827 -1.1356 0.0065 26 1 -0.3633 0.0055 1.0277 27 1 -0.3633 0.8872 -0.5186 28 1 -0.3633 -0.8927 -0.5090 29 1 1.9166 2.1170 -0.0006 30 1 3.7596 3.2544 -0.0162 31 1 6.7250 3.1819 -0.3884 32 1 4.8166 5.1255 -1.3540 33 1 6.5373 5.5590 -0.9700 34 1 3.1679 8.3493 2.4581 35 1 7.0945 4.7944 1.4294 36 1 5.6332 4.0049 2.1626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031018506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:32 Heat of formation + Delta-G solvation = -29.529177 kcal Electronic energy + Delta-G solvation = -27208.830411 eV Core-core repulsion = 22703.974121 eV Total energy + Delta-G solvation = -4504.856291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.03150 -47.62211 -47.42303 -41.91713 -39.58506 -37.83290 -34.17542 -33.56160 -32.28761 -30.82091 -28.70247 -27.85241 -25.75867 -25.40453 -23.45919 -22.33575 -21.26445 -20.41205 -19.57542 -18.45560 -18.37949 -18.10239 -17.52254 -17.23390 -16.21456 -16.14976 -15.82872 -15.06113 -14.66733 -14.47048 -14.32608 -14.26146 -13.96352 -13.80077 -13.68943 -13.60373 -13.55236 -13.44431 -13.17663 -13.11745 -12.91648 -12.36816 -12.03434 -11.53227 -11.40014 -11.05918 -10.59308 -10.34141 -10.22811 -9.79058 -9.52477 -9.26097 -9.20264 -8.92408 -8.51950 -7.22193 -6.38816 -3.30325 1.07382 1.37951 1.58272 2.64613 3.29921 3.37416 3.40239 3.43297 3.51985 3.62729 3.85425 4.28887 4.35755 4.40885 4.54142 4.65579 4.69009 4.81606 4.94203 4.96787 5.10281 5.15626 5.36840 5.54207 5.83711 5.92323 6.17749 6.21844 6.23308 6.29947 6.40094 6.80788 6.95897 7.03616 7.77181 8.16066 8.41953 8.90230 9.43309 10.29662 11.13738 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.004168 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.951288 B = 6715.448976 C = 7372.461708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.345 5.345 3 C 0.111 3.889 4 C -0.244 4.244 5 C 0.585 3.415 6 O -0.528 6.528 7 N -0.690 5.690 8 C 0.102 3.898 9 C 0.114 3.886 10 N -0.629 5.629 11 C -0.308 4.308 12 H 0.082 0.918 13 C -0.022 4.022 14 N -0.933 5.933 15 Si 1.070 2.930 16 H -0.296 1.296 17 H -0.294 1.294 18 H -0.286 1.286 19 C 0.084 3.916 20 C 0.035 3.965 21 C 0.554 3.446 22 F -0.168 7.168 23 F -0.175 7.175 24 F -0.134 7.134 25 N -0.244 5.244 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.199 0.801 30 H 0.402 0.598 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -17.476 -8.856 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.124 5.124 3 C -0.040 4.040 4 C -0.259 4.259 5 C 0.371 3.629 6 O -0.405 6.405 7 N -0.339 5.339 8 C -0.005 4.005 9 C -0.013 4.013 10 N -0.358 5.358 11 C -0.434 4.434 12 H 0.100 0.900 13 C -0.221 4.221 14 N -0.575 5.575 15 Si 0.902 3.098 16 H -0.224 1.224 17 H -0.223 1.223 18 H -0.213 1.213 19 C -0.043 4.043 20 C -0.134 4.134 21 C 0.497 3.503 22 F -0.149 7.149 23 F -0.156 7.156 24 F -0.115 7.115 25 N -0.066 5.066 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.216 0.784 30 H 0.237 0.763 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.735 -18.884 -7.163 20.995 hybrid contribution -0.330 1.259 -1.508 1.992 sum -6.064 -17.626 -8.671 20.558 Atomic orbital electron populations 1.22204 0.72167 1.05677 1.04774 1.48418 1.07603 1.03166 1.53260 1.23330 0.89625 0.94354 0.96641 1.20162 0.93929 0.91923 1.19919 1.17091 0.87389 0.81793 0.76664 1.90856 1.26222 1.73321 1.50138 1.45254 1.10028 1.04608 1.74050 1.22478 0.88048 0.90934 0.99022 1.22714 0.98238 0.89923 0.90424 1.46139 1.50176 1.37953 1.01539 1.20095 1.18767 1.11507 0.93012 0.89998 1.25696 1.01712 0.99468 0.95203 1.70936 1.33888 1.14790 1.37913 0.83692 0.76065 0.74180 0.75821 1.22350 1.22267 1.21281 1.23287 0.95692 0.88991 0.96288 1.22154 0.92964 0.93356 1.04885 1.16804 0.81556 0.77244 0.74688 1.93239 1.92147 1.93841 1.35672 1.93212 1.92924 1.48094 1.81394 1.93406 1.56613 1.81307 1.80214 1.77141 0.99949 1.08005 1.21544 0.89373 0.88120 0.88343 0.78376 0.76270 0.87490 0.93305 0.92981 0.92930 0.92632 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.44 59.85 0.68 1.09 16 2 N -0.34 -3.30 3.98 -67.60 -0.27 -3.57 16 3 C 0.11 1.11 10.99 -16.56 -0.18 0.93 16 4 C -0.24 -3.36 6.09 -105.06 -0.64 -4.00 16 5 C 0.58 9.41 7.77 -12.52 -0.10 9.32 16 6 O -0.53 -9.92 12.85 5.27 0.07 -9.85 16 7 N -0.69 -10.75 5.39 -54.55 -0.29 -11.04 16 8 C 0.10 1.74 4.61 -67.67 -0.31 1.42 16 9 C 0.11 2.05 8.44 -8.51 -0.07 1.98 16 10 N -0.63 -14.39 3.70 -184.60 -0.68 -15.07 16 11 C -0.31 -8.35 11.08 -15.06 -0.17 -8.52 16 12 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16 13 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 14 N -0.93 -28.57 13.70 55.49 0.76 -27.81 16 15 Si 1.07 26.54 25.13 -169.99 -4.27 22.27 16 16 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.29 -6.98 6.65 56.52 0.38 -6.60 16 18 H -0.29 -6.71 6.13 56.52 0.35 -6.37 16 19 C 0.08 1.74 5.54 -8.36 -0.05 1.69 16 20 C 0.04 0.50 6.60 -82.02 -0.54 -0.04 16 21 C 0.55 8.15 3.37 36.00 0.12 8.27 16 22 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16 23 F -0.17 -2.39 17.25 2.25 0.04 -2.35 16 24 F -0.13 -2.18 13.56 2.25 0.03 -2.15 16 25 N -0.24 -3.13 12.43 33.89 0.42 -2.71 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.20 1.31 7.46 -52.49 -0.39 0.92 16 30 H 0.40 5.65 7.68 -40.82 -0.31 5.33 16 31 H 0.11 1.74 7.45 -51.93 -0.39 1.35 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16 35 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 36 H 0.05 1.20 4.65 -51.93 -0.24 0.95 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -35.32 319.07 -4.20 -39.52 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.50 Total: -0.96 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.35 Total: 11.42 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.06 Total: -60.19 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.01 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.27 Total: 22.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.32 -4.20 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031018506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.993 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds