Wall clock time and date at job start Tue Mar 31 2020 12:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34269 * 125.75250 * 2 1 4 4 C 1.38047 * 107.41302 * 180.11111 * 3 2 1 5 5 C 1.47432 * 126.41064 * 179.87502 * 4 3 2 6 6 O 1.21608 * 119.99684 * 179.69236 * 5 4 3 7 7 N 1.34775 * 119.99874 * 359.68229 * 5 4 3 8 8 C 1.46500 * 119.99438 * 180.02562 * 7 5 4 9 9 C 1.53498 * 114.20367 * 155.00573 * 8 7 5 10 10 N 1.47065 * 87.98675 * 87.51602 * 9 8 7 11 11 C 1.36935 * 136.05778 * 207.07950 * 10 9 8 12 12 H 1.07997 * 119.99961 * 6.77313 * 11 10 9 13 13 C 1.38812 * 119.99962 * 186.76980 * 11 10 9 14 14 N 1.31618 * 119.99992 * 172.26235 * 13 11 10 15 15 Si 1.86794 * 120.00220 * 352.26666 * 13 11 10 16 16 H 1.48493 * 109.47463 * 175.35996 * 15 13 11 17 17 H 1.48510 * 109.46810 * 295.35961 * 15 13 11 18 18 H 1.48498 * 109.47153 * 55.35226 * 15 13 11 19 19 C 1.47070 * 87.88470 * 27.34556 * 10 9 8 20 20 C 1.41288 * 107.17191 * 359.60828 * 4 3 2 21 21 C 1.50699 * 125.98778 * 180.23680 * 20 4 3 22 22 F 1.39910 * 109.46867 * 90.00267 * 21 20 4 23 23 F 1.39899 * 109.47402 * 209.99929 * 21 20 4 24 24 F 1.39900 * 109.47355 * 330.00677 * 21 20 4 25 25 N 1.30443 * 108.02653 * 0.24386 * 20 4 3 26 26 H 1.09007 * 109.46986 * 270.30637 * 1 2 3 27 27 H 1.08997 * 109.47242 * 30.30747 * 1 2 3 28 28 H 1.08996 * 109.46951 * 150.30696 * 1 2 3 29 29 H 1.07998 * 126.29137 * 359.96225 * 3 2 1 30 30 H 0.96999 * 120.00385 * 0.02562 * 7 5 4 31 31 H 1.09000 * 113.28874 * 21.93582 * 8 7 5 32 32 H 1.09003 * 113.46903 * 332.73508 * 9 8 7 33 33 H 1.09002 * 113.47097 * 202.29943 * 9 8 7 34 34 H 0.97005 * 119.99783 * 4.88000 * 14 13 11 35 35 H 1.08996 * 113.47141 * 87.43428 * 19 10 9 36 36 H 1.09002 * 113.46180 * 217.88172 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0897 0.0000 4 6 3.5599 0.6553 -0.0026 5 6 4.7638 1.5062 -0.0061 6 8 5.8682 0.9970 -0.0024 7 7 4.6405 2.8483 -0.0135 8 6 5.8369 3.6937 -0.0176 9 6 5.6189 5.0899 -0.6170 10 7 5.2064 5.5427 0.7201 11 6 4.3913 6.5221 1.2215 12 1 3.7862 7.1159 0.5525 13 6 4.3428 6.7517 2.5896 14 7 3.6805 7.7872 3.0601 15 14 5.2176 5.5911 3.7631 16 1 5.1095 6.1139 5.1488 17 1 4.5893 4.2475 3.6905 18 1 6.6494 5.4891 3.3827 19 6 6.0599 4.4849 1.2819 20 6 3.5311 -0.7573 0.0051 21 6 4.7322 -1.6674 0.0106 22 9 5.1033 -1.9419 1.3313 23 9 4.4143 -2.8631 -0.6425 24 9 5.7941 -1.0422 -0.6518 25 7 2.2827 -1.1356 0.0065 26 1 -0.3633 0.0055 1.0277 27 1 -0.3633 0.8872 -0.5186 28 1 -0.3633 -0.8927 -0.5090 29 1 1.9166 2.1170 -0.0006 30 1 3.7596 3.2544 -0.0162 31 1 6.7250 3.1819 -0.3884 32 1 4.8166 5.1255 -1.3540 33 1 6.5373 5.5590 -0.9700 34 1 3.1679 8.3493 2.4581 35 1 7.0945 4.7944 1.4294 36 1 5.6332 4.0049 2.1626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031018506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:31 Heat of formation + Delta-G solvation = -56.473741 kcal Electronic energy + Delta-G solvation = -27209.998815 eV Core-core repulsion = 22703.974121 eV Total energy + Delta-G solvation = -4506.024695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.16729 -48.74735 -48.59139 -42.80460 -40.96062 -39.25499 -35.14050 -34.89798 -34.13358 -31.84980 -29.69333 -29.40784 -26.96963 -26.72340 -24.80515 -23.65036 -22.31333 -21.55820 -21.10646 -19.61199 -19.54776 -19.37641 -19.17778 -18.28785 -17.40846 -17.10730 -16.94163 -16.44298 -15.94361 -15.73171 -15.58577 -15.49523 -15.39660 -15.16406 -15.08341 -14.83156 -14.78937 -14.69000 -14.32049 -13.77666 -13.70683 -13.48410 -13.35527 -13.24127 -12.75016 -12.46036 -12.40225 -11.99652 -11.32256 -11.21746 -11.08332 -11.02718 -10.93379 -10.18482 -9.84593 -9.16767 -8.58971 -5.41595 0.25319 0.33112 0.80360 1.42605 1.47392 1.66777 1.67401 2.11421 2.20979 2.51032 2.53739 2.85345 2.98612 3.27720 3.28921 3.49287 3.60865 3.68509 4.01199 4.07395 4.34208 4.37471 4.39596 4.42529 4.63286 4.69834 4.70387 4.74913 4.83898 4.97909 5.22988 5.54103 5.62753 5.93575 6.00176 6.58090 6.74915 7.22251 7.37217 8.31780 8.96841 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.004168 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.951288 B = 6715.448976 C = 7372.461708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.332 5.332 3 C 0.136 3.864 4 C -0.276 4.276 5 C 0.587 3.413 6 O -0.561 6.561 7 N -0.686 5.686 8 C 0.124 3.876 9 C 0.119 3.881 10 N -0.653 5.653 11 C -0.280 4.280 12 H 0.061 0.939 13 C -0.078 4.078 14 N -0.974 5.974 15 Si 1.103 2.897 16 H -0.311 1.311 17 H -0.279 1.279 18 H -0.268 1.268 19 C 0.073 3.927 20 C 0.019 3.981 21 C 0.551 3.449 22 F -0.175 7.175 23 F -0.172 7.172 24 F -0.146 7.146 25 N -0.260 5.260 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.237 0.763 30 H 0.410 0.590 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -18.453 -9.913 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.111 5.111 3 C -0.016 4.016 4 C -0.291 4.291 5 C 0.375 3.625 6 O -0.440 6.440 7 N -0.336 5.336 8 C 0.017 3.983 9 C -0.006 4.006 10 N -0.383 5.383 11 C -0.408 4.408 12 H 0.078 0.922 13 C -0.270 4.270 14 N -0.620 5.620 15 Si 0.932 3.068 16 H -0.239 1.239 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.053 4.053 20 C -0.149 4.149 21 C 0.495 3.505 22 F -0.156 7.156 23 F -0.153 7.153 24 F -0.127 7.127 25 N -0.084 5.084 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.125 0.875 29 H 0.253 0.747 30 H 0.247 0.753 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.631 -19.913 -8.275 22.561 hybrid contribution -0.157 1.521 -1.303 2.009 sum -6.787 -18.392 -9.578 21.820 Atomic orbital electron populations 1.22733 0.69037 1.07817 1.06361 1.48875 1.09085 1.02151 1.50992 1.23809 0.88263 0.95784 0.93744 1.20043 0.94585 0.91469 1.23051 1.17366 0.87738 0.81810 0.75615 1.90837 1.27701 1.73844 1.51622 1.45194 1.09988 1.04455 1.73992 1.22213 0.89198 0.90642 0.96282 1.22887 0.99317 0.89803 0.88614 1.46188 1.50283 1.37413 1.04384 1.19989 1.17699 1.10627 0.92482 0.92150 1.26662 1.02811 1.00339 0.97223 1.71018 1.36340 1.16698 1.37979 0.83265 0.76539 0.73392 0.73593 1.23940 1.20626 1.19347 1.23501 0.95404 0.88865 0.97542 1.22047 0.93096 0.93512 1.06215 1.16928 0.81795 0.77536 0.74290 1.93214 1.92303 1.93936 1.36176 1.93208 1.92857 1.47966 1.81285 1.93373 1.57351 1.81563 1.80410 1.77088 0.99707 1.09742 1.21879 0.88005 0.84812 0.87473 0.74725 0.75312 0.86096 0.91642 0.91140 0.94175 0.91903 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.44 127.77 1.46 1.84 16 2 N -0.33 -5.26 3.98 -367.77 -1.46 -6.73 16 3 C 0.14 2.26 10.99 84.27 0.93 3.18 16 4 C -0.28 -7.06 6.09 -20.15 -0.12 -7.18 16 5 C 0.59 17.83 7.77 86.67 0.67 18.51 16 6 O -0.56 -20.50 12.85 -4.06 -0.05 -20.55 16 7 N -0.69 -19.51 5.39 -444.76 -2.40 -21.90 16 8 C 0.12 3.86 4.61 45.55 0.21 4.07 16 9 C 0.12 3.90 8.44 83.18 0.70 4.60 16 10 N -0.65 -28.46 3.70 -737.96 -2.73 -31.19 16 11 C -0.28 -15.01 11.08 84.03 0.93 -14.07 16 12 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 13 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 14 N -0.97 -60.65 13.70 21.65 0.30 -60.35 16 15 Si 1.10 53.20 25.13 68.60 1.72 54.92 16 16 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 17 H -0.28 -12.57 6.65 99.48 0.66 -11.91 16 18 H -0.27 -11.94 6.13 99.48 0.61 -11.33 16 19 C 0.07 2.84 5.54 83.27 0.46 3.30 16 20 C 0.02 0.52 6.60 43.51 0.29 0.81 16 21 C 0.55 16.15 3.37 71.24 0.24 16.39 16 22 F -0.17 -5.35 17.30 44.97 0.78 -4.57 16 23 F -0.17 -4.67 17.25 44.97 0.78 -3.90 16 24 F -0.15 -4.74 13.56 44.97 0.61 -4.13 16 25 N -0.26 -6.22 12.43 -46.68 -0.58 -6.80 16 26 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.24 1.97 7.46 -2.91 -0.02 1.94 16 30 H 0.41 10.18 7.68 -92.71 -0.71 9.47 16 31 H 0.12 3.56 7.45 -2.39 -0.02 3.54 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.25 15.40 8.73 -92.70 -0.81 14.59 16 35 H 0.06 2.38 7.73 -2.39 -0.02 2.36 16 36 H 0.04 1.74 4.65 -2.39 -0.01 1.73 16 Total: -1.00 -77.76 319.07 3.47 -74.29 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 0.27 Total: 3.44 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 6.24 Total: 27.47 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.87 Total: -126.97 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 2.16 Total: -12.60 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 1.72 Total: 54.92 kcal Total: -77.76 3.47 -74.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031018506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.815 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds