Wall clock time and date at job start Tue Mar 31 2020 12:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39674 * 127.32434 * 2 1 4 4 C 1.50708 * 126.06687 * 0.02562 * 3 2 1 5 5 F 1.39901 * 109.47004 * 185.26833 * 4 3 2 6 6 F 1.39903 * 109.46923 * 305.26489 * 4 3 2 7 7 F 1.39896 * 109.47176 * 65.26206 * 4 3 2 8 8 N 1.30858 * 107.86423 * 180.26981 * 3 2 1 9 9 N 1.28444 * 110.92807 * 359.76949 * 8 3 2 10 10 H 0.96999 * 125.18852 * 180.02562 * 9 8 3 11 11 C 1.36603 * 109.61699 * 0.02562 * 9 8 3 12 12 C 1.47160 * 126.88248 * 179.97438 * 11 9 8 13 13 O 1.21628 * 120.00054 * 180.02562 * 12 11 9 14 14 N 1.34781 * 120.00151 * 0.02685 * 12 11 9 15 15 C 1.46499 * 120.00166 * 180.02562 * 14 12 11 16 16 C 1.53496 * 114.20781 * 154.99901 * 15 14 12 17 17 N 1.47062 * 87.98485 * 87.52018 * 16 15 14 18 18 C 1.36939 * 136.05593 * 207.08750 * 17 16 15 19 19 H 1.08008 * 119.99868 * 7.82597 * 18 17 16 20 20 C 1.38808 * 120.00203 * 187.82575 * 18 17 16 21 21 N 1.31618 * 119.99998 * 195.17052 * 20 18 17 22 22 Si 1.86797 * 119.99840 * 15.16580 * 20 18 17 23 23 H 1.48503 * 109.47450 * 270.00422 * 22 20 18 24 24 H 1.48503 * 109.47360 * 30.00092 * 22 20 18 25 25 H 1.48498 * 109.47360 * 150.00270 * 22 20 18 26 26 C 1.47059 * 87.88616 * 27.34176 * 17 16 15 27 27 H 1.09000 * 109.47377 * 270.10914 * 1 2 3 28 28 H 1.09004 * 109.46766 * 30.10805 * 1 2 3 29 29 H 1.08995 * 109.46906 * 150.09775 * 1 2 3 30 30 H 0.96996 * 119.99820 * 359.97438 * 14 12 11 31 31 H 1.09006 * 113.27838 * 21.93040 * 15 14 12 32 32 H 1.09008 * 113.46447 * 332.73453 * 16 15 14 33 33 H 1.09003 * 113.46673 * 202.30352 * 16 15 14 34 34 H 0.96995 * 120.00365 * 354.90363 * 21 20 18 35 35 H 1.08997 * 113.47135 * 87.43718 * 26 17 16 36 36 H 1.09007 * 113.47198 * 217.88025 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 6 1.9231 2.5549 0.0005 5 9 3.0484 3.3772 -0.1207 6 9 1.0596 2.7844 -1.0761 7 9 1.2613 2.8437 1.1988 8 7 3.5877 0.6748 -0.0059 9 7 3.6206 -0.6093 -0.0048 10 1 4.4274 -1.1477 -0.0081 11 6 2.3461 -1.1007 0.0015 12 6 1.9454 -2.5167 0.0042 13 8 0.7664 -2.8151 0.0095 14 7 2.8851 -3.4830 0.0007 15 6 2.4863 -4.8926 0.0028 16 6 3.5335 -5.8439 -0.5928 17 7 4.1391 -5.9309 0.7445 18 6 5.3890 -6.1779 1.2466 19 1 6.2355 -6.2451 0.5792 20 6 5.5680 -6.3420 2.6133 21 7 6.7766 -6.2806 3.1308 22 14 4.0934 -6.6498 3.7180 23 1 3.5533 -5.3517 4.1959 24 1 3.0442 -7.3711 2.9537 25 1 4.5104 -7.4713 4.8826 26 6 2.8107 -5.6424 1.3053 27 1 -0.3634 0.0020 1.0276 28 1 -0.3633 0.8891 -0.5155 29 1 -0.3633 -0.8908 -0.5123 30 1 3.8254 -3.2450 -0.0039 31 1 1.4737 -5.0544 -0.3671 32 1 4.1795 -5.3702 -1.3321 33 1 3.1140 -6.7875 -0.9417 34 1 7.5489 -6.1948 2.5503 35 1 2.2007 -6.5329 1.4568 36 1 2.8409 -4.9972 2.1833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031046834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:03 Heat of formation + Delta-G solvation = -48.154423 kcal Electronic energy + Delta-G solvation = -26652.627252 eV Core-core repulsion = 22146.963310 eV Total energy + Delta-G solvation = -4505.663942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.36256 -47.88674 -47.85001 -43.18634 -39.91060 -38.12462 -34.28061 -33.41895 -32.48363 -31.87015 -28.42222 -27.58818 -26.77541 -25.48355 -24.04185 -22.40566 -21.58611 -20.52622 -19.72700 -19.14156 -18.76919 -18.49174 -17.74803 -17.60744 -16.32512 -16.09767 -16.04537 -15.13965 -14.79007 -14.66957 -14.58133 -14.30265 -14.28519 -14.02082 -13.99565 -13.88115 -13.60555 -13.39361 -13.32878 -13.15621 -12.84120 -12.49987 -12.21469 -11.57733 -11.26039 -11.12378 -10.68991 -10.35358 -10.22333 -10.13444 -9.93293 -9.40558 -9.33245 -8.92850 -8.77371 -7.37348 -6.45107 -3.40202 0.82480 1.59424 1.92866 2.52905 2.89263 2.97388 3.32741 3.37977 3.39398 3.52934 3.69230 4.14374 4.31159 4.46470 4.49698 4.56797 4.71580 4.87760 4.94510 5.24173 5.47282 5.53315 5.65357 5.67177 5.72900 5.96984 6.06210 6.10703 6.17768 6.24139 6.32318 6.71089 6.92895 7.19528 7.42092 7.97648 8.08319 8.81106 9.34215 10.19040 11.04101 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.003278 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.559363 B = 8539.695701 C = 8986.258698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.074 4.074 3 C -0.077 4.077 4 C 0.563 3.437 5 F -0.167 7.167 6 F -0.167 7.167 7 F -0.167 7.167 8 N -0.207 5.207 9 N -0.351 5.351 10 H 0.457 0.543 11 C -0.028 4.028 12 C 0.592 3.408 13 O -0.517 6.517 14 N -0.688 5.688 15 C 0.099 3.901 16 C 0.109 3.891 17 N -0.624 5.624 18 C -0.313 4.313 19 H 0.083 0.917 20 C -0.019 4.019 21 N -0.927 5.927 22 Si 1.060 2.940 23 H -0.294 1.294 24 H -0.281 1.281 25 H -0.294 1.294 26 C 0.087 3.913 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.402 0.598 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 14.701 -8.795 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.235 4.235 4 C 0.507 3.493 5 F -0.148 7.148 6 F -0.149 7.149 7 F -0.148 7.148 8 N -0.043 5.043 9 N -0.071 5.071 10 H 0.305 0.695 11 C -0.156 4.156 12 C 0.376 3.624 13 O -0.392 6.392 14 N -0.338 5.338 15 C -0.007 4.007 16 C -0.018 4.018 17 N -0.353 5.353 18 C -0.439 4.439 19 H 0.100 0.900 20 C -0.219 4.219 21 N -0.569 5.569 22 Si 0.892 3.108 23 H -0.222 1.222 24 H -0.207 1.207 25 H -0.221 1.221 26 C -0.039 4.039 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.237 0.763 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.397 14.578 -7.128 19.829 hybrid contribution 0.877 -0.288 -1.480 1.744 sum -10.521 14.290 -8.607 19.722 Atomic orbital electron populations 1.20453 0.86688 1.04270 1.03650 1.20455 0.97758 0.88515 1.01771 1.21553 0.91429 0.94065 1.16427 1.16683 0.74976 0.83630 0.74049 1.93233 1.51542 1.74391 1.95629 1.93225 1.70672 1.95114 1.55858 1.93245 1.81268 1.94122 1.46183 1.73058 1.21598 0.94256 1.15385 1.43696 1.08581 1.03774 1.51059 0.69507 1.21674 0.84803 0.95348 1.13742 1.16745 0.86097 0.82197 0.77360 1.90817 1.16568 1.81782 1.50028 1.45376 1.09253 1.05941 1.73197 1.22561 0.99147 0.79288 0.99673 1.22755 0.92328 0.95795 0.90912 1.46450 1.03317 1.84123 1.01387 1.20135 0.81425 1.48992 0.93336 0.89972 1.25770 1.02792 0.98606 0.94738 1.70915 0.97955 1.51164 1.36841 0.83796 0.74519 0.76762 0.75765 1.22170 1.20721 1.22129 1.23206 0.87904 0.96814 0.96009 0.90004 0.90953 0.88784 0.76307 0.87243 0.93201 0.92940 0.92755 0.92360 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.75 36.01 0.35 -0.62 16 2 C -0.07 -0.91 6.29 -104.03 -0.65 -1.56 16 3 C -0.08 -0.94 6.50 -82.47 -0.54 -1.47 16 4 C 0.56 6.26 3.32 36.01 0.12 6.38 16 5 F -0.17 -1.93 17.15 2.25 0.04 -1.90 16 6 F -0.17 -1.75 16.34 2.25 0.04 -1.71 16 7 F -0.17 -1.84 17.30 2.25 0.04 -1.80 16 8 N -0.21 -2.55 11.93 33.64 0.40 -2.15 16 9 N -0.35 -3.86 6.85 33.48 0.23 -3.63 16 10 H 0.46 3.85 8.22 -190.46 -1.57 2.28 16 11 C -0.03 -0.35 7.16 -82.06 -0.59 -0.94 16 12 C 0.59 8.28 7.80 -12.64 -0.10 8.18 16 13 O -0.52 -8.28 14.65 5.25 0.08 -8.20 16 14 N -0.69 -9.62 5.39 -54.65 -0.29 -9.92 16 15 C 0.10 1.54 4.61 -67.68 -0.31 1.23 16 16 C 0.11 1.84 8.44 -8.52 -0.07 1.77 16 17 N -0.62 -13.68 3.62 -184.65 -0.67 -14.35 16 18 C -0.31 -8.28 11.03 -15.06 -0.17 -8.45 16 19 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 20 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 21 N -0.93 -27.92 13.70 55.49 0.76 -27.16 16 22 Si 1.06 25.55 25.50 -169.99 -4.34 21.22 16 23 H -0.29 -6.90 6.97 56.52 0.39 -6.50 16 24 H -0.28 -6.25 5.66 56.52 0.32 -5.93 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 C 0.09 1.69 5.43 -8.39 -0.05 1.64 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.64 7.13 -51.93 -0.37 0.27 16 29 H 0.09 1.05 6.68 -51.93 -0.35 0.70 16 30 H 0.40 5.19 7.95 -40.82 -0.32 4.86 16 31 H 0.11 1.56 7.45 -51.93 -0.39 1.18 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.77 8.73 -40.82 -0.36 7.41 16 35 H 0.06 1.10 7.02 -51.93 -0.36 0.74 16 36 H 0.06 1.16 6.22 -51.93 -0.32 0.83 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -31.62 319.91 -5.61 -37.22 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.61 Total: 2.03 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.10 Total: 5.52 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.43 Total: -57.21 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.34 Total: 21.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.62 -5.61 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031046834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.930 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds