Wall clock time and date at job start Tue Mar 31 2020 12:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39674 * 127.32434 * 2 1 4 4 C 1.50708 * 126.06687 * 0.02562 * 3 2 1 5 5 F 1.39901 * 109.47004 * 185.26833 * 4 3 2 6 6 F 1.39903 * 109.46923 * 305.26489 * 4 3 2 7 7 F 1.39896 * 109.47176 * 65.26206 * 4 3 2 8 8 N 1.30858 * 107.86423 * 180.26981 * 3 2 1 9 9 N 1.28444 * 110.92807 * 359.76949 * 8 3 2 10 10 H 0.96999 * 125.18852 * 180.02562 * 9 8 3 11 11 C 1.36603 * 109.61699 * 0.02562 * 9 8 3 12 12 C 1.47160 * 126.88248 * 179.97438 * 11 9 8 13 13 O 1.21628 * 120.00054 * 180.02562 * 12 11 9 14 14 N 1.34781 * 120.00151 * 0.02685 * 12 11 9 15 15 C 1.46499 * 120.00166 * 180.02562 * 14 12 11 16 16 C 1.53496 * 114.20781 * 154.99901 * 15 14 12 17 17 N 1.47062 * 87.98485 * 87.52018 * 16 15 14 18 18 C 1.36939 * 136.05593 * 207.08750 * 17 16 15 19 19 H 1.08008 * 119.99868 * 7.82597 * 18 17 16 20 20 C 1.38808 * 120.00203 * 187.82575 * 18 17 16 21 21 N 1.31618 * 119.99998 * 195.17052 * 20 18 17 22 22 Si 1.86797 * 119.99840 * 15.16580 * 20 18 17 23 23 H 1.48503 * 109.47450 * 270.00422 * 22 20 18 24 24 H 1.48503 * 109.47360 * 30.00092 * 22 20 18 25 25 H 1.48498 * 109.47360 * 150.00270 * 22 20 18 26 26 C 1.47059 * 87.88616 * 27.34176 * 17 16 15 27 27 H 1.09000 * 109.47377 * 270.10914 * 1 2 3 28 28 H 1.09004 * 109.46766 * 30.10805 * 1 2 3 29 29 H 1.08995 * 109.46906 * 150.09775 * 1 2 3 30 30 H 0.96996 * 119.99820 * 359.97438 * 14 12 11 31 31 H 1.09006 * 113.27838 * 21.93040 * 15 14 12 32 32 H 1.09008 * 113.46447 * 332.73453 * 16 15 14 33 33 H 1.09003 * 113.46673 * 202.30352 * 16 15 14 34 34 H 0.96995 * 120.00365 * 354.90363 * 21 20 18 35 35 H 1.08997 * 113.47135 * 87.43718 * 26 17 16 36 36 H 1.09007 * 113.47198 * 217.88025 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 6 1.9231 2.5549 0.0005 5 9 3.0484 3.3772 -0.1207 6 9 1.0596 2.7844 -1.0761 7 9 1.2613 2.8437 1.1988 8 7 3.5877 0.6748 -0.0059 9 7 3.6206 -0.6093 -0.0048 10 1 4.4274 -1.1477 -0.0081 11 6 2.3461 -1.1007 0.0015 12 6 1.9454 -2.5167 0.0042 13 8 0.7664 -2.8151 0.0095 14 7 2.8851 -3.4830 0.0007 15 6 2.4863 -4.8926 0.0028 16 6 3.5335 -5.8439 -0.5928 17 7 4.1391 -5.9309 0.7445 18 6 5.3890 -6.1779 1.2466 19 1 6.2355 -6.2451 0.5792 20 6 5.5680 -6.3420 2.6133 21 7 6.7766 -6.2806 3.1308 22 14 4.0934 -6.6498 3.7180 23 1 3.5533 -5.3517 4.1959 24 1 3.0442 -7.3711 2.9537 25 1 4.5104 -7.4713 4.8826 26 6 2.8107 -5.6424 1.3053 27 1 -0.3634 0.0020 1.0276 28 1 -0.3633 0.8891 -0.5155 29 1 -0.3633 -0.8908 -0.5123 30 1 3.8254 -3.2450 -0.0039 31 1 1.4737 -5.0544 -0.3671 32 1 4.1795 -5.3702 -1.3321 33 1 3.1140 -6.7875 -0.9417 34 1 7.5489 -6.1948 2.5503 35 1 2.2007 -6.5329 1.4568 36 1 2.8409 -4.9972 2.1833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031046834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:02 Heat of formation + Delta-G solvation = -71.551719 kcal Electronic energy + Delta-G solvation = -26653.641835 eV Core-core repulsion = 22146.963310 eV Total energy + Delta-G solvation = -4506.678525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.23316 -48.74275 -48.73290 -44.12605 -41.17956 -39.48129 -35.46432 -34.66934 -34.12018 -32.96223 -29.95151 -28.71755 -27.67029 -26.95451 -25.33729 -23.84155 -22.59861 -21.53766 -21.22686 -20.16602 -19.63667 -19.52646 -19.38859 -18.62656 -17.41882 -17.33551 -17.17536 -16.54885 -16.06425 -15.68051 -15.62458 -15.50014 -15.44871 -15.24364 -15.15389 -14.89212 -14.86593 -14.73111 -14.45848 -13.97539 -13.71917 -13.58247 -13.38857 -13.35449 -12.79238 -12.33986 -12.17148 -11.98058 -11.65690 -11.40582 -11.28802 -11.06897 -10.87915 -10.34588 -10.04749 -9.27059 -8.60062 -5.46623 -0.16269 0.65458 1.05417 1.39703 1.47922 1.57912 1.63006 1.84990 1.90216 2.48635 2.51762 2.78981 3.00024 3.17244 3.27530 3.33443 3.55150 3.60394 3.76989 3.96363 4.25734 4.36925 4.57885 4.67085 4.68798 4.73246 4.75693 4.84559 4.90775 5.20208 5.26649 5.40089 5.51211 5.96388 6.22110 6.35653 6.69964 6.86004 7.33339 8.26688 8.91165 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.003278 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.559363 B = 8539.695701 C = 8986.258698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.075 4.075 3 C -0.086 4.086 4 C 0.568 3.432 5 F -0.170 7.170 6 F -0.162 7.162 7 F -0.166 7.166 8 N -0.215 5.215 9 N -0.340 5.340 10 H 0.466 0.534 11 C -0.038 4.038 12 C 0.600 3.400 13 O -0.535 6.535 14 N -0.688 5.688 15 C 0.124 3.876 16 C 0.113 3.887 17 N -0.651 5.651 18 C -0.285 4.285 19 H 0.056 0.944 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 1.095 2.905 23 H -0.287 1.287 24 H -0.251 1.251 25 H -0.308 1.308 26 C 0.077 3.923 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.407 0.593 31 H 0.133 0.867 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.072 0.928 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 15.257 -9.866 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.243 4.243 4 C 0.512 3.488 5 F -0.151 7.151 6 F -0.143 7.143 7 F -0.147 7.147 8 N -0.052 5.052 9 N -0.061 5.061 10 H 0.316 0.684 11 C -0.166 4.166 12 C 0.385 3.615 13 O -0.411 6.411 14 N -0.338 5.338 15 C 0.018 3.982 16 C -0.013 4.013 17 N -0.381 5.381 18 C -0.413 4.413 19 H 0.074 0.926 20 C -0.272 4.272 21 N -0.616 5.616 22 Si 0.922 3.078 23 H -0.214 1.214 24 H -0.175 1.175 25 H -0.236 1.236 26 C -0.049 4.049 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.242 0.758 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.609 15.147 -8.258 21.974 hybrid contribution 1.539 -0.406 -1.283 2.044 sum -12.070 14.742 -9.541 21.308 Atomic orbital electron populations 1.20502 0.85569 1.04703 1.04157 1.20736 0.98631 0.88331 1.00917 1.21712 0.91365 0.94590 1.16644 1.16558 0.74928 0.83151 0.74192 1.93227 1.51820 1.74428 1.95660 1.93235 1.70447 1.95045 1.55603 1.93248 1.81205 1.94074 1.46169 1.73044 1.21909 0.94706 1.15529 1.43716 1.08680 1.03484 1.50243 0.68376 1.21485 0.85436 0.94727 1.14913 1.16780 0.85669 0.82523 0.76548 1.90811 1.17268 1.82176 1.50830 1.45355 1.09651 1.05534 1.73235 1.22316 0.99832 0.79383 0.96704 1.22955 0.92322 0.97124 0.88882 1.46439 1.03003 1.84213 1.04413 1.19974 0.83110 1.45456 0.92782 0.92588 1.26814 1.03899 0.99686 0.96787 1.71010 0.98532 1.55140 1.36944 0.83371 0.73007 0.77033 0.74344 1.21402 1.17520 1.23642 1.23450 0.86514 0.97670 0.97281 0.89384 0.89428 0.89409 0.75766 0.84901 0.92067 0.90721 0.94211 0.91091 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.75 71.24 0.69 -1.03 16 2 C -0.08 -1.70 6.29 -19.48 -0.12 -1.82 16 3 C -0.09 -1.94 6.50 43.05 0.28 -1.66 16 4 C 0.57 11.69 3.32 71.24 0.24 11.93 16 5 F -0.17 -3.72 17.15 44.97 0.77 -2.95 16 6 F -0.16 -3.07 16.34 44.97 0.73 -2.34 16 7 F -0.17 -3.37 17.30 44.97 0.78 -2.59 16 8 N -0.21 -4.98 11.93 -47.49 -0.57 -5.55 16 9 N -0.34 -6.92 6.85 -48.00 -0.33 -7.25 16 10 H 0.47 7.17 8.22 -220.01 -1.81 5.37 16 11 C -0.04 -0.88 7.16 40.78 0.29 -0.59 16 12 C 0.60 15.33 7.80 86.59 0.68 16.00 16 13 O -0.54 -15.72 14.65 -4.12 -0.06 -15.78 16 14 N -0.69 -17.46 5.39 -445.04 -2.40 -19.86 16 15 C 0.12 3.42 4.61 45.55 0.21 3.63 16 16 C 0.11 3.43 8.44 83.17 0.70 4.13 16 17 N -0.65 -27.28 3.62 -738.11 -2.67 -29.95 16 18 C -0.29 -15.09 11.03 84.03 0.93 -14.17 16 19 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -60.15 13.70 21.65 0.30 -59.86 16 22 Si 1.10 51.28 25.50 68.60 1.75 53.03 16 23 H -0.29 -12.92 6.97 99.48 0.69 -12.23 16 24 H -0.25 -10.33 5.66 99.48 0.56 -9.76 16 25 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 26 C 0.08 2.75 5.43 83.26 0.45 3.20 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.34 7.13 -2.39 -0.02 1.33 16 29 H 0.09 1.78 6.68 -2.39 -0.02 1.77 16 30 H 0.41 9.63 7.95 -92.71 -0.74 8.90 16 31 H 0.13 3.20 7.45 -2.38 -0.02 3.18 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.25 15.38 8.73 -92.71 -0.81 14.57 16 35 H 0.07 2.40 7.02 -2.39 -0.02 2.39 16 36 H 0.04 1.63 6.22 -2.38 -0.01 1.61 16 Total: -1.00 -67.73 319.91 1.56 -66.17 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -1.56 Total: 11.27 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 4.82 Total: 15.64 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.67 Total: -122.46 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.06 Total: -15.78 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 2.28 Total: -7.88 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.75 Total: 53.03 kcal Total: -67.73 1.56 -66.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031046834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.383 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds