Wall clock time and date at job start Tue Mar 31 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47432 * 300.00296 * 3 2 1 6 6 H 1.48506 * 109.47041 * 60.00137 * 3 2 1 7 7 C 1.38817 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00134 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49091 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11274 * 155.36154 * 10 9 7 12 12 N 1.46501 * 113.73993 * 137.95554 * 11 10 9 13 13 C 1.34774 * 120.00093 * 156.92091 * 12 11 10 14 14 O 1.21280 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.46504 * 109.46990 * 180.02562 * 15 13 12 17 17 C 1.34951 * 126.03463 * 125.02933 * 16 15 13 18 18 C 1.35320 * 107.74569 * 180.02562 * 17 16 15 19 19 C 1.39866 * 107.91898 * 359.97438 * 18 17 16 20 20 C 1.50696 * 125.89915 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.47387 * 185.01800 * 20 19 18 22 22 F 1.39902 * 109.46951 * 305.01484 * 20 19 18 23 23 F 1.39898 * 109.47460 * 65.01250 * 20 19 18 24 24 N 1.30844 * 108.20609 * 0.02562 * 19 18 17 25 25 C 1.47817 * 134.45519 * 359.87054 * 9 7 2 26 26 H 0.96994 * 120.00204 * 0.02562 * 1 2 3 27 27 H 1.09002 * 113.76752 * 41.06363 * 10 9 7 28 28 H 1.09000 * 113.77246 * 269.66216 * 10 9 7 29 29 H 1.08996 * 113.74238 * 269.15091 * 11 10 9 30 30 H 0.97000 * 119.99983 * 336.92738 * 12 11 10 31 31 H 1.09001 * 109.46775 * 60.00690 * 15 13 12 32 32 H 1.08995 * 109.47564 * 300.00261 * 15 13 12 33 33 H 1.07996 * 126.12664 * 359.95494 * 17 16 15 34 34 H 1.07993 * 126.03961 * 179.97438 * 18 17 16 35 35 H 1.08998 * 113.76542 * 90.37909 * 25 9 7 36 36 H 1.08998 * 113.83483 * 318.91576 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0015 11 6 0.3475 -4.0832 0.6398 12 7 -0.3332 -5.2614 0.0969 13 6 -1.2725 -5.8935 0.8280 14 8 -1.5546 -5.4867 1.9352 15 6 -1.9731 -7.1051 0.2693 16 7 -2.9414 -7.6042 1.2489 17 6 -4.2579 -7.8065 1.0318 18 6 -4.7992 -8.2703 2.1821 19 6 -3.7784 -8.3548 3.1345 20 6 -3.9348 -8.8234 4.5582 21 9 -2.7228 -8.6624 5.2381 22 9 -4.9283 -8.0686 5.1911 23 9 -4.2988 -10.1742 4.5672 24 7 -2.6644 -7.9556 2.5764 25 6 -0.1058 -2.7571 0.0023 26 1 -0.4850 0.8400 -0.0004 27 1 2.5630 -4.0326 0.6531 28 1 1.8313 -4.2346 -0.9993 29 1 0.3608 -4.0647 1.7295 30 1 -0.1078 -5.5866 -0.7887 31 1 -1.2395 -7.8822 0.0547 32 1 -2.4933 -6.8328 -0.6490 33 1 -4.7852 -7.6290 0.1062 34 1 -5.8360 -8.5293 2.3372 35 1 -0.5318 -2.8718 -0.9944 36 1 -0.7183 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031359989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:02 Heat of formation + Delta-G solvation = -36.112516 kcal Electronic energy + Delta-G solvation = -25842.784104 eV Core-core repulsion = 21337.642338 eV Total energy + Delta-G solvation = -4505.141766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.25843 -47.80340 -47.73390 -41.71343 -39.62265 -37.64930 -33.97771 -33.66879 -31.91469 -30.70848 -29.08030 -27.46600 -25.82304 -24.93056 -23.22917 -21.76661 -21.41657 -20.39987 -19.71804 -18.66449 -18.41524 -18.17982 -17.27717 -16.97721 -16.76338 -15.75780 -15.47318 -15.02501 -14.76590 -14.61801 -14.49828 -14.18524 -14.01971 -13.93592 -13.89020 -13.88472 -13.78811 -13.56475 -12.93232 -12.59879 -12.35974 -12.00452 -11.55772 -11.53552 -11.17583 -10.95122 -10.86221 -10.54005 -10.30800 -10.06842 -9.66097 -9.59351 -9.05443 -8.88689 -8.61787 -7.00306 -5.84539 -3.18819 1.32530 1.68950 2.09616 2.57722 2.60601 3.16002 3.35417 3.40452 3.43267 3.54266 3.81820 4.25059 4.31621 4.38859 4.43868 4.63020 4.68230 5.04142 5.06757 5.22217 5.40021 5.40850 5.46088 5.88952 5.90870 6.09540 6.28678 6.43744 6.47029 6.58342 7.07588 7.13931 7.23868 7.45977 7.64304 7.88995 8.28563 8.95615 9.62067 10.46920 11.32244 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.002436 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.675355 B =11491.874336 C =11840.634059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.093 3.907 12 N -0.711 5.711 13 C 0.495 3.505 14 O -0.512 6.512 15 C 0.109 3.891 16 N -0.340 5.340 17 C 0.064 3.936 18 C -0.231 4.231 19 C -0.029 4.029 20 C 0.557 3.443 21 F -0.166 7.166 22 F -0.167 7.167 23 F -0.171 7.171 24 N -0.202 5.202 25 C 0.155 3.845 26 H 0.255 0.745 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.111 0.889 30 H 0.398 0.602 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.188 0.812 34 H 0.160 0.840 35 H 0.029 0.971 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -21.262 -0.684 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.354 4.354 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.013 4.013 11 C -0.012 4.012 12 N -0.363 5.363 13 C 0.277 3.723 14 O -0.385 6.385 15 C -0.016 4.016 16 N -0.123 5.123 17 C -0.080 4.080 18 C -0.260 4.260 19 C -0.196 4.196 20 C 0.501 3.499 21 F -0.147 7.147 22 F -0.149 7.149 23 F -0.152 7.152 24 N -0.025 5.025 25 C 0.028 3.972 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.231 0.769 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.205 0.795 34 H 0.178 0.822 35 H 0.047 0.953 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.704 -20.334 0.232 22.119 hybrid contribution -0.343 0.668 -0.660 0.999 sum -9.047 -19.666 -0.428 21.651 Atomic orbital electron populations 1.69829 1.05083 1.25482 1.56073 1.24833 0.95718 0.97729 1.02018 0.86007 0.78724 0.83427 0.77335 1.20360 1.21664 1.21541 1.19031 0.90302 0.81528 1.44546 0.89920 1.45712 1.02361 0.99199 1.86040 1.22868 0.94545 0.86871 0.97057 1.24002 0.93387 0.83758 1.00048 1.46075 1.39575 1.31000 1.19656 1.20327 0.81117 0.84430 0.86421 1.90825 1.63077 1.65393 1.19252 1.21763 0.92965 0.97098 0.89762 1.48148 1.07106 1.48702 1.08358 1.22650 0.84018 1.00412 1.00949 1.21147 1.00518 1.12518 0.91804 1.22016 0.94908 1.07632 0.95076 1.16865 0.74253 0.74894 0.83887 1.93252 1.44624 1.95179 1.81645 1.93237 1.62039 1.76137 1.83439 1.93222 1.91717 1.33477 1.96789 1.77526 1.20842 1.14475 0.89675 1.22713 0.88266 0.89044 0.97164 0.93524 0.93132 0.94636 0.87087 0.76857 0.86224 0.84980 0.79468 0.82203 0.95342 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 11.39 55.49 0.63 -26.52 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.28 10.70 -15.06 -0.16 -6.44 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.19 3.70 -177.88 -0.66 -15.84 16 10 C 0.11 2.16 8.69 -2.96 -0.03 2.13 16 11 C 0.09 1.71 4.40 -70.14 -0.31 1.40 16 12 N -0.71 -9.43 5.37 -55.34 -0.30 -9.73 16 13 C 0.49 6.85 7.86 -10.99 -0.09 6.77 16 14 O -0.51 -9.98 15.33 5.56 0.09 -9.89 16 15 C 0.11 0.91 6.99 -5.19 -0.04 0.88 16 16 N -0.34 -3.83 3.40 -62.54 -0.21 -4.04 16 17 C 0.06 0.55 11.45 -17.22 -0.20 0.35 16 18 C -0.23 -2.27 10.73 -40.01 -0.43 -2.70 16 19 C -0.03 -0.37 6.51 -82.41 -0.54 -0.91 16 20 C 0.56 6.85 3.51 36.00 0.13 6.97 16 21 F -0.17 -2.31 17.14 2.25 0.04 -2.27 16 22 F -0.17 -2.03 17.30 2.25 0.04 -1.99 16 23 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 24 N -0.20 -2.97 11.42 33.67 0.38 -2.58 16 25 C 0.15 3.56 7.33 -2.83 -0.02 3.54 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.11 2.32 7.51 -51.93 -0.39 1.93 16 30 H 0.40 3.73 8.71 -40.82 -0.36 3.37 16 31 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 2.06 7.17 -51.93 -0.37 1.69 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -36.86 333.12 -5.34 -42.20 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -3.62 Total: -1.17 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -1.77 Total: 11.73 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.15 Total: -58.71 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.12 Total: -6.11 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.86 -5.34 -42.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031359989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.088 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds