Wall clock time and date at job start Tue Mar 31 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47432 * 300.00296 * 3 2 1 6 6 H 1.48506 * 109.47041 * 60.00137 * 3 2 1 7 7 C 1.38817 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00134 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49091 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11274 * 155.36154 * 10 9 7 12 12 N 1.46501 * 113.73993 * 137.95554 * 11 10 9 13 13 C 1.34774 * 120.00093 * 156.92091 * 12 11 10 14 14 O 1.21280 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.46504 * 109.46990 * 180.02562 * 15 13 12 17 17 C 1.34951 * 126.03463 * 125.02933 * 16 15 13 18 18 C 1.35320 * 107.74569 * 180.02562 * 17 16 15 19 19 C 1.39866 * 107.91898 * 359.97438 * 18 17 16 20 20 C 1.50696 * 125.89915 * 179.97438 * 19 18 17 21 21 F 1.39906 * 109.47387 * 185.01800 * 20 19 18 22 22 F 1.39902 * 109.46951 * 305.01484 * 20 19 18 23 23 F 1.39898 * 109.47460 * 65.01250 * 20 19 18 24 24 N 1.30844 * 108.20609 * 0.02562 * 19 18 17 25 25 C 1.47817 * 134.45519 * 359.87054 * 9 7 2 26 26 H 0.96994 * 120.00204 * 0.02562 * 1 2 3 27 27 H 1.09002 * 113.76752 * 41.06363 * 10 9 7 28 28 H 1.09000 * 113.77246 * 269.66216 * 10 9 7 29 29 H 1.08996 * 113.74238 * 269.15091 * 11 10 9 30 30 H 0.97000 * 119.99983 * 336.92738 * 12 11 10 31 31 H 1.09001 * 109.46775 * 60.00690 * 15 13 12 32 32 H 1.08995 * 109.47564 * 300.00261 * 15 13 12 33 33 H 1.07996 * 126.12664 * 359.95494 * 17 16 15 34 34 H 1.07993 * 126.03961 * 179.97438 * 18 17 16 35 35 H 1.08998 * 113.76542 * 90.37909 * 25 9 7 36 36 H 1.08998 * 113.83483 * 318.91576 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0015 11 6 0.3475 -4.0832 0.6398 12 7 -0.3332 -5.2614 0.0969 13 6 -1.2725 -5.8935 0.8280 14 8 -1.5546 -5.4867 1.9352 15 6 -1.9731 -7.1051 0.2693 16 7 -2.9414 -7.6042 1.2489 17 6 -4.2579 -7.8065 1.0318 18 6 -4.7992 -8.2703 2.1821 19 6 -3.7784 -8.3548 3.1345 20 6 -3.9348 -8.8234 4.5582 21 9 -2.7228 -8.6624 5.2381 22 9 -4.9283 -8.0686 5.1911 23 9 -4.2988 -10.1742 4.5672 24 7 -2.6644 -7.9556 2.5764 25 6 -0.1058 -2.7571 0.0023 26 1 -0.4850 0.8400 -0.0004 27 1 2.5630 -4.0326 0.6531 28 1 1.8313 -4.2346 -0.9993 29 1 0.3608 -4.0647 1.7295 30 1 -0.1078 -5.5866 -0.7887 31 1 -1.2395 -7.8822 0.0547 32 1 -2.4933 -6.8328 -0.6490 33 1 -4.7852 -7.6290 0.1062 34 1 -5.8360 -8.5293 2.3372 35 1 -0.5318 -2.8718 -0.9944 36 1 -0.7183 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031359989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:01 Heat of formation + Delta-G solvation = -64.063967 kcal Electronic energy + Delta-G solvation = -25843.996169 eV Core-core repulsion = 21337.642338 eV Total energy + Delta-G solvation = -4506.353831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.22423 -48.74846 -48.73386 -42.48801 -40.90658 -39.20842 -35.20748 -34.78820 -33.75631 -31.46924 -30.14827 -29.13143 -26.84663 -26.63424 -24.90383 -22.60924 -22.36701 -21.49644 -21.29059 -19.61785 -19.35368 -19.00380 -18.81347 -18.33709 -17.84167 -17.02244 -16.85537 -16.48596 -15.87071 -15.70295 -15.59605 -15.48264 -15.15949 -14.90817 -14.87911 -14.86665 -14.71040 -14.56226 -14.45506 -13.71452 -13.51656 -13.31777 -13.22799 -13.13858 -12.85790 -12.66727 -12.29983 -11.98409 -11.92773 -11.56382 -11.29640 -10.92590 -10.62133 -10.00686 -9.81106 -8.99357 -7.94936 -5.29709 0.52114 0.93939 1.37061 1.44171 1.45855 1.54440 1.56017 1.72302 2.11457 2.46670 2.66031 2.91752 3.23341 3.31872 3.34811 3.60323 3.75302 3.81844 3.97888 4.18306 4.29637 4.39645 4.50394 4.60040 4.71137 4.73759 4.88898 5.12639 5.17118 5.21291 5.46307 5.67059 5.85356 5.88000 6.28925 6.56310 6.86219 7.26131 7.55856 8.48112 9.21937 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.002436 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.675355 B =11491.874336 C =11840.634059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.090 0.910 9 N -0.641 5.641 10 C 0.124 3.876 11 C 0.122 3.878 12 N -0.695 5.695 13 C 0.491 3.509 14 O -0.575 6.575 15 C 0.115 3.885 16 N -0.347 5.347 17 C 0.082 3.918 18 C -0.244 4.244 19 C -0.047 4.047 20 C 0.557 3.443 21 F -0.181 7.181 22 F -0.169 7.169 23 F -0.164 7.164 24 N -0.262 5.262 25 C 0.154 3.846 26 H 0.248 0.752 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.422 0.578 31 H 0.155 0.845 32 H 0.188 0.812 33 H 0.241 0.759 34 H 0.183 0.817 35 H 0.034 0.966 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 -22.980 -3.186 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.362 4.362 8 H 0.108 0.892 9 N -0.369 5.369 10 C -0.002 4.002 11 C 0.015 3.985 12 N -0.348 5.348 13 C 0.276 3.724 14 O -0.453 6.453 15 C -0.008 4.008 16 N -0.131 5.131 17 C -0.062 4.062 18 C -0.273 4.273 19 C -0.214 4.214 20 C 0.501 3.499 21 F -0.162 7.162 22 F -0.150 7.150 23 F -0.145 7.145 24 N -0.086 5.086 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.261 0.739 31 H 0.172 0.828 32 H 0.205 0.795 33 H 0.257 0.743 34 H 0.201 0.799 35 H 0.052 0.948 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.672 -22.131 -2.310 23.882 hybrid contribution -0.370 1.115 0.110 1.180 sum -9.042 -21.016 -2.200 22.984 Atomic orbital electron populations 1.70030 1.06603 1.25623 1.58069 1.25701 0.96579 1.01175 1.02810 0.84968 0.78327 0.79122 0.76646 1.18565 1.21677 1.22279 1.19455 0.90968 0.82933 1.42817 0.89246 1.46057 1.03490 1.00906 1.86416 1.23027 0.94747 0.83452 0.98946 1.23095 0.93295 0.83973 0.98139 1.45712 1.39178 1.29209 1.20724 1.21358 0.80249 0.85321 0.85444 1.90818 1.64849 1.67430 1.22196 1.22112 0.93793 0.94808 0.90073 1.48421 1.08608 1.48460 1.07616 1.23519 0.82826 0.97675 1.02201 1.21593 1.01185 1.12933 0.91624 1.22216 0.95851 1.07995 0.95293 1.16938 0.73684 0.75157 0.84105 1.93213 1.45653 1.95304 1.82055 1.93224 1.61989 1.76252 1.83561 1.93225 1.91588 1.32938 1.96784 1.77428 1.22390 1.16788 0.92025 1.22598 0.87185 0.90840 0.96669 0.94297 0.92205 0.90796 0.90060 0.73937 0.82798 0.79457 0.74263 0.79940 0.94802 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.29 11.39 21.65 0.25 -58.05 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.98 45.75 29.55 68.60 2.03 47.77 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 9 N -0.64 -32.13 3.70 -716.70 -2.65 -34.78 16 10 C 0.12 4.46 8.69 86.49 0.75 5.21 16 11 C 0.12 4.44 4.40 46.76 0.21 4.65 16 12 N -0.69 -16.73 5.37 -447.38 -2.40 -19.14 16 13 C 0.49 12.65 7.86 87.66 0.69 13.34 16 14 O -0.57 -22.70 15.33 -3.03 -0.05 -22.75 16 15 C 0.12 1.43 6.99 85.63 0.60 2.03 16 16 N -0.35 -6.84 3.40 -351.79 -1.20 -8.03 16 17 C 0.08 1.08 11.45 83.54 0.96 2.04 16 18 C -0.24 -4.28 10.73 21.99 0.24 -4.05 16 19 C -0.05 -1.21 6.51 43.10 0.28 -0.93 16 20 C 0.56 13.97 3.51 71.23 0.25 14.22 16 21 F -0.18 -5.29 17.14 44.97 0.77 -4.52 16 22 F -0.17 -4.18 17.30 44.97 0.78 -3.40 16 23 F -0.16 -3.62 17.30 44.97 0.78 -2.84 16 24 N -0.26 -7.60 11.42 -47.39 -0.54 -8.14 16 25 C 0.15 7.22 7.33 86.45 0.63 7.85 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.18 8.11 -2.39 -0.02 2.16 16 29 H 0.08 3.51 7.51 -2.39 -0.02 3.49 16 30 H 0.42 6.10 8.71 -92.71 -0.81 5.29 16 31 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.19 0.27 8.07 -2.39 -0.02 0.25 16 33 H 0.24 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 1.55 7.17 -2.39 -0.02 1.53 16 Total: -1.00 -87.45 333.12 4.07 -83.38 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 0.34 Total: 1.71 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 5.97 Total: 28.78 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.55 Total: -128.14 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 9 Polarization: -13.09 SS G_CDS: 2.33 Total: -10.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -87.45 4.07 -83.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031359989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.321 kcal (2) G-P(sol) polarization free energy of solvation -87.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds