Wall clock time and date at job start Tue Mar 31 2020 12:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00442 * 2 1 4 4 H 1.48508 * 109.46943 * 274.98828 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.98849 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.99111 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00076 * 185.03874 * 7 2 1 9 9 N 1.36936 * 119.99955 * 5.03689 * 7 2 1 10 10 C 1.47063 * 136.05985 * 353.17158 * 9 7 2 11 11 C 1.53492 * 87.98961 * 207.38373 * 10 9 7 12 12 C 1.47065 * 136.05908 * 173.54887 * 9 7 2 13 13 H 1.08997 * 113.47125 * 267.40168 * 12 9 7 14 14 C 1.53001 * 113.46539 * 37.83757 * 12 9 7 15 15 N 1.46502 * 109.47218 * 285.49700 * 14 12 9 16 16 C 1.34779 * 119.99973 * 180.02562 * 15 14 12 17 17 O 1.21576 * 120.00098 * 359.97438 * 16 15 14 18 18 C 1.47711 * 119.99967 * 179.97438 * 16 15 14 19 19 N 1.31800 * 126.51984 * 0.02655 * 18 16 15 20 20 N 1.28466 * 110.07781 * 180.02562 * 19 18 16 21 21 H 0.97004 * 124.88940 * 179.97438 * 20 19 18 22 22 C 1.35031 * 110.22839 * 359.97438 * 20 19 18 23 23 C 1.35370 * 107.22962 * 359.72669 * 22 20 19 24 24 C 1.50700 * 127.25319 * 180.25624 * 23 22 20 25 25 F 1.39904 * 109.46824 * 0.19073 * 24 23 22 26 26 F 1.39893 * 109.47293 * 120.18731 * 24 23 22 27 27 F 1.39900 * 109.47326 * 240.19565 * 24 23 22 28 28 H 0.97002 * 119.99494 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46631 * 322.16821 * 10 9 7 30 30 H 1.09001 * 113.46614 * 92.60087 * 10 9 7 31 31 H 1.08999 * 114.20511 * 220.34593 * 11 10 9 32 32 H 1.08991 * 114.38656 * 87.53162 * 11 10 9 33 33 H 1.09005 * 109.47468 * 45.49770 * 14 12 9 34 34 H 1.09007 * 109.47434 * 165.49795 * 14 12 9 35 35 H 0.96995 * 120.00335 * 0.02562 * 15 14 12 36 36 H 1.08003 * 126.38947 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0816 9 7 1.3294 -2.3857 -0.1052 10 6 -0.0820 -2.7987 -0.1095 11 6 0.3696 -4.1563 0.4463 12 6 1.6881 -3.8040 -0.2560 13 1 1.7286 -4.1335 -1.2942 14 6 2.9300 -4.2065 0.5419 15 7 4.1272 -3.6838 -0.1211 16 6 5.3455 -3.9167 0.4061 17 8 5.4509 -4.5603 1.4321 18 6 6.5527 -3.3902 -0.2628 19 7 6.5878 -2.6807 -1.3730 20 7 7.8028 -2.3895 -1.6720 21 1 8.0751 -1.8740 -2.4473 22 6 8.6463 -2.9043 -0.7518 23 6 7.8908 -3.5460 0.1701 24 6 8.3735 -4.2764 1.3967 25 9 9.7686 -4.1993 1.4665 26 9 7.8165 -3.6899 2.5381 27 9 7.9837 -5.6181 1.3242 28 1 -0.4849 0.8401 0.0004 29 1 -0.7026 -2.2306 0.5835 30 1 -0.5132 -2.8604 -1.1087 31 1 -0.1516 -5.0112 0.0156 32 1 0.4391 -4.1970 1.5332 33 1 2.8637 -3.7953 1.5493 34 1 2.9902 -5.2935 0.5965 35 1 4.0431 -3.1700 -0.9396 36 1 9.7227 -2.8161 -0.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038323346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:52 Heat of formation + Delta-G solvation = -48.148380 kcal Electronic energy + Delta-G solvation = -27088.284434 eV Core-core repulsion = 22582.620754 eV Total energy + Delta-G solvation = -4505.663680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.95667 -47.54775 -47.33988 -43.11957 -39.25180 -38.01293 -34.13975 -32.76792 -32.23375 -31.60554 -28.13823 -27.72351 -26.14727 -24.19438 -23.46226 -21.95244 -21.39038 -20.17511 -19.42886 -19.09275 -18.29602 -18.09104 -17.32972 -16.89379 -16.42301 -16.08057 -15.59402 -15.21515 -14.43072 -14.37959 -14.30211 -14.26556 -13.90979 -13.84468 -13.62391 -13.54416 -13.49474 -13.17616 -12.88558 -12.46512 -11.91103 -11.55775 -11.30308 -11.08692 -10.98823 -10.79226 -10.56756 -10.13947 -9.91477 -9.85650 -9.83659 -9.82029 -9.23347 -8.81723 -8.57992 -6.88488 -5.78396 -3.09652 1.32190 1.37598 2.28226 2.84567 3.33724 3.37071 3.42535 3.44509 3.45712 3.73192 4.00459 4.37452 4.44411 4.56698 4.57182 4.87513 5.16748 5.23662 5.39615 5.56150 5.61051 5.74892 5.92693 6.10289 6.31945 6.40844 6.46724 6.60517 6.71070 6.84677 7.24300 7.32452 7.38673 7.58775 7.86555 7.97167 8.43419 9.03302 9.70064 10.63468 11.39480 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.004179 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.765252 B = 6698.052900 C = 7681.366389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.693 5.693 16 C 0.588 3.412 17 O -0.526 6.526 18 C 0.047 3.953 19 N -0.241 5.241 20 N -0.374 5.374 21 H 0.455 0.545 22 C 0.055 3.945 23 C -0.261 4.261 24 C 0.552 3.448 25 F -0.186 7.186 26 F -0.164 7.164 27 F -0.167 7.167 28 H 0.253 0.747 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.011 -7.998 -3.930 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.343 5.343 16 C 0.370 3.630 17 O -0.401 6.401 18 C -0.116 4.116 19 N -0.075 5.075 20 N -0.086 5.086 21 H 0.301 0.699 22 C -0.092 4.092 23 C -0.273 4.273 24 C 0.496 3.504 25 F -0.167 7.167 26 F -0.145 7.145 27 F -0.148 7.148 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 16.371 -7.642 -3.938 18.491 hybrid contribution 1.262 1.222 -0.275 1.778 sum 17.633 -6.421 -4.213 19.232 Atomic orbital electron populations 1.69848 1.04984 1.25260 1.56216 1.24793 0.95609 0.97364 1.02487 0.86195 0.78850 0.83965 0.77413 1.21707 1.21696 1.20658 1.18876 0.90569 0.81398 1.43171 0.90108 1.45655 1.02601 0.99965 1.84473 1.21970 0.88583 0.89091 0.97485 1.23677 0.96934 0.98958 1.00414 1.22434 0.91799 0.87688 0.96254 0.93326 1.21923 0.83042 0.97626 0.97773 1.45806 1.05119 1.54444 1.28923 1.16809 0.81735 0.80424 0.83991 1.90839 1.86007 1.40256 1.22982 1.22008 0.94011 1.01352 0.94246 1.73793 1.02917 1.15115 1.15682 1.43369 1.03129 1.39961 1.22157 0.69869 1.22683 0.98587 0.97781 0.90193 1.20303 0.94401 1.11968 1.00658 1.16926 0.73897 0.77264 0.82277 1.93149 1.30487 1.96297 1.96794 1.93251 1.85054 1.83818 1.52424 1.93231 1.90671 1.34492 1.96374 0.93705 0.91374 0.95549 0.92297 0.90143 0.90682 0.91772 0.75384 0.78331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.63 55.49 0.65 -26.28 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.21 -5.74 10.54 -15.06 -0.16 -5.90 16 8 H 0.08 2.13 7.61 -52.49 -0.40 1.73 16 9 N -0.60 -14.65 3.65 -177.04 -0.65 -15.30 16 10 C 0.15 3.52 7.31 -8.53 -0.06 3.46 16 11 C -0.16 -2.90 8.03 -26.22 -0.21 -3.11 16 12 C 0.13 2.43 4.10 -72.41 -0.30 2.13 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.20 5.52 -4.04 -0.02 2.18 16 15 N -0.69 -12.44 5.33 -61.28 -0.33 -12.77 16 16 C 0.59 10.70 7.83 -12.39 -0.10 10.60 16 17 O -0.53 -10.71 14.48 5.30 0.08 -10.63 16 18 C 0.05 0.73 7.13 -82.77 -0.59 0.14 16 19 N -0.24 -3.19 11.92 33.42 0.40 -2.79 16 20 N -0.37 -3.15 6.83 30.47 0.21 -2.94 16 21 H 0.46 1.80 8.96 -190.44 -1.71 0.10 16 22 C 0.06 0.46 11.48 -17.17 -0.20 0.26 16 23 C -0.26 -3.40 5.66 -104.40 -0.59 -3.99 16 24 C 0.55 7.70 2.85 36.01 0.10 7.80 16 25 F -0.19 -2.13 16.87 2.25 0.04 -2.09 16 26 F -0.16 -2.68 16.42 2.25 0.04 -2.65 16 27 F -0.17 -2.56 16.40 2.25 0.04 -2.53 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.73 7.32 -51.93 -0.38 1.35 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.41 7.31 8.20 -40.82 -0.33 6.97 16 36 H 0.20 0.75 8.02 -52.48 -0.42 0.33 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -34.37 327.61 -6.75 -41.12 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.91 Total: 1.53 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -2.22 Total: 13.31 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.28 Total: -60.09 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.11 Total: -7.26 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.37 -6.75 -41.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038323346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.031 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds