Wall clock time and date at job start Tue Mar 31 2020 12:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00442 * 2 1 4 4 H 1.48508 * 109.46943 * 274.98828 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.98849 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.99111 * 3 2 1 7 7 C 1.38814 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00076 * 185.03874 * 7 2 1 9 9 N 1.36936 * 119.99955 * 5.03689 * 7 2 1 10 10 C 1.47063 * 136.05985 * 353.17158 * 9 7 2 11 11 C 1.53492 * 87.98961 * 207.38373 * 10 9 7 12 12 C 1.47065 * 136.05908 * 173.54887 * 9 7 2 13 13 H 1.08997 * 113.47125 * 267.40168 * 12 9 7 14 14 C 1.53001 * 113.46539 * 37.83757 * 12 9 7 15 15 N 1.46502 * 109.47218 * 285.49700 * 14 12 9 16 16 C 1.34779 * 119.99973 * 180.02562 * 15 14 12 17 17 O 1.21576 * 120.00098 * 359.97438 * 16 15 14 18 18 C 1.47711 * 119.99967 * 179.97438 * 16 15 14 19 19 N 1.31800 * 126.51984 * 0.02655 * 18 16 15 20 20 N 1.28466 * 110.07781 * 180.02562 * 19 18 16 21 21 H 0.97004 * 124.88940 * 179.97438 * 20 19 18 22 22 C 1.35031 * 110.22839 * 359.97438 * 20 19 18 23 23 C 1.35370 * 107.22962 * 359.72669 * 22 20 19 24 24 C 1.50700 * 127.25319 * 180.25624 * 23 22 20 25 25 F 1.39904 * 109.46824 * 0.19073 * 24 23 22 26 26 F 1.39893 * 109.47293 * 120.18731 * 24 23 22 27 27 F 1.39900 * 109.47326 * 240.19565 * 24 23 22 28 28 H 0.97002 * 119.99494 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.46631 * 322.16821 * 10 9 7 30 30 H 1.09001 * 113.46614 * 92.60087 * 10 9 7 31 31 H 1.08999 * 114.20511 * 220.34593 * 11 10 9 32 32 H 1.08991 * 114.38656 * 87.53162 * 11 10 9 33 33 H 1.09005 * 109.47468 * 45.49770 * 14 12 9 34 34 H 1.09007 * 109.47434 * 165.49795 * 14 12 9 35 35 H 0.96995 * 120.00335 * 0.02562 * 15 14 12 36 36 H 1.08003 * 126.38947 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3949 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0816 9 7 1.3294 -2.3857 -0.1052 10 6 -0.0820 -2.7987 -0.1095 11 6 0.3696 -4.1563 0.4463 12 6 1.6881 -3.8040 -0.2560 13 1 1.7286 -4.1335 -1.2942 14 6 2.9300 -4.2065 0.5419 15 7 4.1272 -3.6838 -0.1211 16 6 5.3455 -3.9167 0.4061 17 8 5.4509 -4.5603 1.4321 18 6 6.5527 -3.3902 -0.2628 19 7 6.5878 -2.6807 -1.3730 20 7 7.8028 -2.3895 -1.6720 21 1 8.0751 -1.8740 -2.4473 22 6 8.6463 -2.9043 -0.7518 23 6 7.8908 -3.5460 0.1701 24 6 8.3735 -4.2764 1.3967 25 9 9.7686 -4.1993 1.4665 26 9 7.8165 -3.6899 2.5381 27 9 7.9837 -5.6181 1.3242 28 1 -0.4849 0.8401 0.0004 29 1 -0.7026 -2.2306 0.5835 30 1 -0.5132 -2.8604 -1.1087 31 1 -0.1516 -5.0112 0.0156 32 1 0.4391 -4.1970 1.5332 33 1 2.8637 -3.7953 1.5493 34 1 2.9902 -5.2935 0.5965 35 1 4.0431 -3.1700 -0.9396 36 1 9.7227 -2.8161 -0.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038323346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:51 Heat of formation + Delta-G solvation = -73.841879 kcal Electronic energy + Delta-G solvation = -27089.398588 eV Core-core repulsion = 22582.620754 eV Total energy + Delta-G solvation = -4506.777833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.02004 -48.57139 -48.48748 -44.00470 -40.71451 -39.64026 -35.61054 -34.25640 -33.69466 -32.56365 -29.97423 -29.29812 -27.14308 -25.41692 -25.37053 -23.37357 -22.42232 -21.50638 -20.92461 -20.20294 -19.38772 -19.11813 -18.79188 -18.05606 -17.77614 -17.22096 -17.02990 -16.89774 -16.03494 -15.66974 -15.58258 -15.40675 -15.36119 -14.93883 -14.86711 -14.72749 -14.68136 -14.64372 -14.33602 -13.62998 -13.47739 -13.36388 -12.95211 -12.70252 -12.59871 -12.31802 -12.24752 -11.88903 -11.66171 -11.46066 -10.93768 -10.85586 -10.84494 -10.70923 -10.04545 -8.86817 -7.88628 -5.18842 0.22885 0.58872 1.41946 1.43250 1.49632 1.51605 1.84350 2.10826 2.21163 2.47040 2.73089 3.02267 3.31825 3.39079 3.49214 3.51684 3.78505 3.92454 3.98279 4.13903 4.35767 4.36214 4.60934 4.66050 4.71670 4.90023 5.07932 5.10823 5.33794 5.38340 5.59465 5.74993 5.85239 5.97440 6.33950 6.59317 6.94807 7.06052 7.64357 8.65084 9.29742 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.004179 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.765252 B = 6698.052900 C = 7681.366389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.205 4.205 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.146 3.854 11 C -0.133 4.133 12 C 0.132 3.868 13 H 0.069 0.931 14 C 0.129 3.871 15 N -0.695 5.695 16 C 0.584 3.416 17 O -0.557 6.557 18 C 0.015 3.985 19 N -0.256 5.256 20 N -0.350 5.350 21 H 0.476 0.524 22 C 0.097 3.903 23 C -0.291 4.291 24 C 0.551 3.449 25 F -0.169 7.169 26 F -0.185 7.185 27 F -0.180 7.180 28 H 0.246 0.754 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.532 -8.410 -5.328 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.334 4.334 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.021 3.979 11 C -0.171 4.171 12 C 0.025 3.975 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.344 5.344 16 C 0.368 3.632 17 O -0.434 6.434 18 C -0.147 4.147 19 N -0.091 5.091 20 N -0.066 5.066 21 H 0.328 0.672 22 C -0.051 4.051 23 C -0.304 4.304 24 C 0.495 3.505 25 F -0.151 7.151 26 F -0.166 7.166 27 F -0.161 7.161 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 18.918 -8.071 -5.373 21.258 hybrid contribution 0.576 1.294 0.118 1.421 sum 19.494 -6.777 -5.255 21.297 Atomic orbital electron populations 1.70020 1.06250 1.25231 1.58571 1.25522 0.96403 1.00397 1.03777 0.85242 0.77726 0.80260 0.77290 1.21182 1.22504 1.19961 1.19146 0.90798 0.82624 1.40812 0.90038 1.45964 1.03698 1.01278 1.84598 1.21990 0.87624 0.91497 0.96820 1.23492 0.95572 0.97584 1.00476 1.22583 0.92859 0.84634 0.97393 0.91385 1.21740 0.83035 0.98690 0.96085 1.45797 1.05207 1.54567 1.28868 1.17219 0.82502 0.79819 0.83684 1.90807 1.86613 1.41647 1.24320 1.21639 0.93776 1.03579 0.95731 1.73701 1.05315 1.15045 1.15066 1.43485 1.01850 1.38744 1.22503 0.67248 1.23370 1.00220 0.93990 0.87472 1.20379 0.94159 1.14128 1.01690 1.17048 0.74505 0.76735 0.82183 1.93171 1.28971 1.96184 1.96735 1.93206 1.85554 1.84086 1.53746 1.93198 1.90942 1.35601 1.96408 0.94529 0.94919 0.95869 0.88079 0.90034 0.93411 0.89566 0.75346 0.73085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 11.63 21.65 0.25 -57.26 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.21 -11.19 10.54 84.03 0.89 -10.30 16 8 H 0.08 4.32 7.61 -2.91 -0.02 4.30 16 9 N -0.63 -30.79 3.65 -714.04 -2.61 -33.40 16 10 C 0.15 6.72 7.31 83.17 0.61 7.32 16 11 C -0.13 -4.55 8.03 30.93 0.25 -4.30 16 12 C 0.13 4.90 4.10 41.78 0.17 5.07 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.13 4.62 5.52 86.38 0.48 5.10 16 15 N -0.69 -24.76 5.33 -466.07 -2.48 -27.25 16 16 C 0.58 21.27 7.83 86.75 0.68 21.95 16 17 O -0.56 -23.05 14.48 -3.96 -0.06 -23.11 16 18 C 0.01 0.44 7.13 42.46 0.30 0.75 16 19 N -0.26 -6.25 11.92 -48.18 -0.57 -6.82 16 20 N -0.35 -4.58 6.83 -57.51 -0.39 -4.98 16 21 H 0.48 1.68 8.96 -219.99 -1.97 -0.29 16 22 C 0.10 1.21 11.48 83.54 0.96 2.17 16 23 C -0.29 -7.00 5.66 -19.72 -0.11 -7.11 16 24 C 0.55 14.79 2.85 71.24 0.20 14.99 16 25 F -0.17 -3.48 16.87 44.97 0.76 -2.72 16 26 F -0.18 -6.05 16.42 44.97 0.74 -5.31 16 27 F -0.18 -5.52 16.40 44.97 0.74 -4.78 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.03 1.71 7.32 -2.39 -0.02 1.69 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.80 8.12 -2.39 -0.02 2.78 16 33 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.41 14.45 8.20 -92.71 -0.76 13.69 16 36 H 0.25 0.28 8.02 -2.91 -0.02 0.26 16 Total: -1.00 -78.25 327.61 1.73 -76.52 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -1.56 Total: 8.71 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 4.89 Total: 32.23 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.80 Total: -129.70 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 9 Polarization: -15.04 SS G_CDS: 2.24 Total: -12.81 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.25 1.73 -76.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038323346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.677 kcal (2) G-P(sol) polarization free energy of solvation -78.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds