Wall clock time and date at job start Tue Mar 31 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47033 * 269.99649 * 3 2 1 5 5 H 1.48506 * 109.47196 * 29.99474 * 3 2 1 6 6 H 1.48496 * 109.47398 * 150.00011 * 3 2 1 7 7 C 1.38815 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00055 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99707 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00027 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.30159 * 35.71910 * 10 9 7 12 12 C 1.54385 * 110.33968 * 273.54645 * 10 9 7 13 13 N 1.48145 * 104.61534 * 264.99271 * 12 10 9 14 14 C 1.34784 * 127.83745 * 140.39879 * 13 12 10 15 15 O 1.21575 * 119.99928 * 180.02562 * 14 13 12 16 16 C 1.47708 * 119.99646 * 0.02562 * 14 13 12 17 17 C 1.41504 * 126.51275 * 179.71393 * 16 14 13 18 18 C 1.35374 * 105.50181 * 179.84608 * 17 16 14 19 19 N 1.35032 * 107.22199 * 0.41692 * 18 17 16 20 20 H 0.97000 * 124.87700 * 179.72532 * 19 18 17 21 21 N 1.28464 * 110.23864 * 359.72166 * 19 18 17 22 22 C 1.48143 * 104.32650 * 320.41442 * 13 12 10 23 23 C 1.54280 * 110.34572 * 158.00462 * 10 9 7 24 24 H 1.09002 * 110.34073 * 0.02562 * 23 10 9 25 25 C 1.52992 * 110.34740 * 237.74265 * 23 10 9 26 26 F 1.39902 * 109.47104 * 60.00154 * 25 23 10 27 27 F 1.39899 * 109.47596 * 180.02562 * 25 23 10 28 28 F 1.39901 * 109.46837 * 300.00234 * 25 23 10 29 29 H 0.96990 * 120.00519 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00417 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.40998 * 23.78119 * 12 10 9 32 32 H 1.08997 * 110.40698 * 146.09320 * 12 10 9 33 33 H 1.08000 * 127.25151 * 0.02562 * 17 16 14 34 34 H 1.07997 * 126.38496 * 180.13977 * 18 17 16 35 35 H 1.09002 * 110.41192 * 158.36992 * 22 13 12 36 36 H 1.09004 * 110.40972 * 280.68729 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5828 -3.2133 -0.5961 12 6 4.3024 -2.9806 1.4458 13 7 5.6438 -2.4916 1.8412 14 6 6.0248 -1.9981 3.0362 15 8 7.1724 -1.6345 3.2057 16 6 5.0479 -1.8991 4.1397 17 6 5.2979 -1.4110 5.4442 18 6 4.1169 -1.5073 6.0989 19 7 3.2219 -2.0314 5.2343 20 1 2.2919 -2.2137 5.4412 21 7 3.7791 -2.2538 4.0983 22 6 6.4713 -2.6677 0.6252 23 6 5.5422 -2.2645 -0.5401 24 1 5.6997 -1.2191 -0.8055 25 6 5.7874 -3.1654 -1.7521 26 9 4.8687 -2.8520 -2.7596 27 9 7.0878 -2.9644 -2.2272 28 9 5.6300 -4.5041 -1.3775 29 1 -0.4850 0.8399 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5374 -2.5628 2.1002 32 1 4.2702 -4.0698 1.4719 33 1 6.2330 -1.0374 5.8343 34 1 3.9273 -1.2226 7.1233 35 1 7.3427 -2.0138 0.6603 36 1 6.7815 -3.7078 0.5238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099216414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:57 Heat of formation + Delta-G solvation = -77.281403 kcal Electronic energy + Delta-G solvation = -27800.573034 eV Core-core repulsion = 23293.646051 eV Total energy + Delta-G solvation = -4506.926982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.95394 -47.46211 -47.36911 -42.55334 -39.63675 -37.55289 -34.16726 -32.43008 -31.57907 -30.96834 -30.44369 -27.93165 -26.19534 -24.30471 -23.18932 -21.90626 -21.58229 -20.44803 -19.35324 -18.39348 -18.33867 -18.07964 -17.92677 -16.99868 -16.68365 -15.70029 -15.47353 -14.98831 -14.67043 -14.43399 -14.26051 -13.99110 -13.84774 -13.79208 -13.67498 -13.54887 -13.50237 -13.18134 -13.02596 -12.86016 -12.36702 -12.11023 -11.85793 -11.48752 -11.06973 -10.98123 -10.91490 -10.43917 -10.26500 -10.01901 -9.70667 -9.39194 -9.20040 -9.16794 -8.57021 -7.42798 -5.88496 -3.26494 1.69811 2.15970 2.69637 2.91762 3.22534 3.30911 3.34226 3.39063 3.54979 3.92286 4.03019 4.15147 4.47889 4.49354 4.77663 4.84113 4.86650 5.15355 5.19235 5.21920 5.42109 5.52762 5.61032 5.64702 5.73983 5.82135 5.98721 6.08920 6.31839 6.37036 6.69564 7.05718 7.63926 7.82609 7.89162 8.28367 8.31906 9.03990 9.76923 9.93643 11.28801 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009041 B = 0.007063 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.297738 B = 3963.457088 C = 6118.977648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.014 3.986 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.095 0.905 9 N -0.734 5.734 10 C 0.183 3.817 11 H 0.085 0.915 12 C 0.067 3.933 13 N -0.603 5.603 14 C 0.627 3.373 15 O -0.544 6.544 16 C -0.012 4.012 17 C -0.182 4.182 18 C -0.019 4.019 19 N -0.380 5.380 20 H 0.447 0.553 21 N -0.235 5.235 22 C 0.118 3.882 23 C -0.170 4.170 24 H 0.126 0.874 25 C 0.465 3.535 26 F -0.172 7.172 27 F -0.187 7.187 28 F -0.181 7.181 29 H 0.261 0.739 30 H 0.364 0.636 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.095 0.905 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.072 -6.630 7.464 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.113 0.887 9 N -0.376 5.376 10 C 0.071 3.929 11 H 0.102 0.898 12 C -0.059 4.059 13 N -0.335 5.335 14 C 0.415 3.585 15 O -0.420 6.420 16 C -0.172 4.172 17 C -0.210 4.210 18 C -0.163 4.163 19 N -0.095 5.095 20 H 0.292 0.708 21 N -0.072 5.072 22 C -0.005 4.005 23 C -0.191 4.191 24 H 0.144 0.856 25 C 0.410 3.590 26 F -0.153 7.153 27 F -0.168 7.168 28 F -0.163 7.163 29 H 0.071 0.929 30 H 0.197 0.803 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.178 0.822 34 H 0.200 0.800 35 H 0.113 0.887 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.685 -6.894 6.909 13.750 hybrid contribution 0.572 1.453 0.439 1.622 sum 10.257 -5.441 7.348 13.740 Atomic orbital electron populations 1.69685 1.05036 1.25950 1.56755 1.24609 0.95142 0.97051 1.01459 0.86660 0.79378 0.85193 0.77978 1.20819 1.21661 1.20318 1.18994 0.79897 0.94929 1.43883 0.88741 1.42761 1.04272 1.01002 1.89532 1.21049 0.87164 0.91105 0.93565 0.89770 1.23843 0.84351 0.98418 0.99240 1.48598 1.13355 1.61589 1.09944 1.16439 0.85766 0.76532 0.79732 1.90769 1.18855 1.50496 1.81886 1.21768 0.91451 1.08149 0.95859 1.21735 0.99432 1.07060 0.92822 1.22913 0.90070 1.04959 0.98401 1.43513 1.13015 1.45471 1.07453 0.70796 1.73730 1.08637 1.19132 1.05689 1.22147 0.93843 1.02351 0.82189 1.23889 1.01591 1.01194 0.92439 0.85613 1.20224 0.73758 0.79740 0.85234 1.93242 1.66463 1.92642 1.62978 1.93172 1.38754 1.94913 1.89967 1.93164 1.95297 1.36554 1.91275 0.92934 0.80281 0.85744 0.91473 0.82185 0.79973 0.88667 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 2 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 3 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.25 -6.51 10.45 -15.06 -0.16 -6.67 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.73 -16.19 4.94 -52.07 -0.26 -16.44 16 10 C 0.18 3.26 2.99 -66.53 -0.20 3.06 16 11 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 12 C 0.07 1.12 6.40 -2.41 -0.02 1.10 16 13 N -0.60 -9.93 3.32 -170.47 -0.57 -10.49 16 14 C 0.63 11.16 7.92 -12.39 -0.10 11.06 16 15 O -0.54 -10.57 17.19 5.30 0.09 -10.48 16 16 C -0.01 -0.19 7.01 -82.77 -0.58 -0.77 16 17 C -0.18 -2.40 10.81 -39.36 -0.43 -2.82 16 18 C -0.02 -0.19 12.02 -17.17 -0.21 -0.40 16 19 N -0.38 -4.36 6.83 30.47 0.21 -4.15 16 20 H 0.45 3.60 8.96 -190.44 -1.71 1.89 16 21 N -0.24 -3.66 9.30 33.42 0.31 -3.35 16 22 C 0.12 1.67 6.38 -2.41 -0.02 1.66 16 23 C -0.17 -2.53 2.84 -89.22 -0.25 -2.79 16 24 H 0.13 1.88 7.64 -51.93 -0.40 1.48 16 25 C 0.47 6.62 2.53 37.15 0.09 6.71 16 26 F -0.17 -2.78 16.93 2.25 0.04 -2.74 16 27 F -0.19 -2.51 17.17 2.25 0.04 -2.48 16 28 F -0.18 -2.51 16.05 2.25 0.04 -2.47 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.36 8.13 5.36 -40.82 -0.22 7.91 16 31 H 0.12 2.36 5.44 -51.93 -0.28 2.07 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.09 1.31 7.88 -51.93 -0.41 0.90 16 36 H 0.08 1.04 7.22 -51.93 -0.37 0.66 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -33.28 319.51 -5.81 -39.09 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.63 Total: 8.48 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.95 Total: 10.44 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.47 Total: -61.51 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.11 Total: -7.69 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -5.81 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099216414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.190 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds