Wall clock time and date at job start Tue Mar 31 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47033 * 269.99649 * 3 2 1 5 5 H 1.48506 * 109.47196 * 29.99474 * 3 2 1 6 6 H 1.48496 * 109.47398 * 150.00011 * 3 2 1 7 7 C 1.38815 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00055 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99707 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00027 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.30159 * 35.71910 * 10 9 7 12 12 C 1.54385 * 110.33968 * 273.54645 * 10 9 7 13 13 N 1.48145 * 104.61534 * 264.99271 * 12 10 9 14 14 C 1.34784 * 127.83745 * 140.39879 * 13 12 10 15 15 O 1.21575 * 119.99928 * 180.02562 * 14 13 12 16 16 C 1.47708 * 119.99646 * 0.02562 * 14 13 12 17 17 C 1.41504 * 126.51275 * 179.71393 * 16 14 13 18 18 C 1.35374 * 105.50181 * 179.84608 * 17 16 14 19 19 N 1.35032 * 107.22199 * 0.41692 * 18 17 16 20 20 H 0.97000 * 124.87700 * 179.72532 * 19 18 17 21 21 N 1.28464 * 110.23864 * 359.72166 * 19 18 17 22 22 C 1.48143 * 104.32650 * 320.41442 * 13 12 10 23 23 C 1.54280 * 110.34572 * 158.00462 * 10 9 7 24 24 H 1.09002 * 110.34073 * 0.02562 * 23 10 9 25 25 C 1.52992 * 110.34740 * 237.74265 * 23 10 9 26 26 F 1.39902 * 109.47104 * 60.00154 * 25 23 10 27 27 F 1.39899 * 109.47596 * 180.02562 * 25 23 10 28 28 F 1.39901 * 109.46837 * 300.00234 * 25 23 10 29 29 H 0.96990 * 120.00519 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00417 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.40998 * 23.78119 * 12 10 9 32 32 H 1.08997 * 110.40698 * 146.09320 * 12 10 9 33 33 H 1.08000 * 127.25151 * 0.02562 * 17 16 14 34 34 H 1.07997 * 126.38496 * 180.13977 * 18 17 16 35 35 H 1.09002 * 110.41192 * 158.36992 * 22 13 12 36 36 H 1.09004 * 110.40972 * 280.68729 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5828 -3.2133 -0.5961 12 6 4.3024 -2.9806 1.4458 13 7 5.6438 -2.4916 1.8412 14 6 6.0248 -1.9981 3.0362 15 8 7.1724 -1.6345 3.2057 16 6 5.0479 -1.8991 4.1397 17 6 5.2979 -1.4110 5.4442 18 6 4.1169 -1.5073 6.0989 19 7 3.2219 -2.0314 5.2343 20 1 2.2919 -2.2137 5.4412 21 7 3.7791 -2.2538 4.0983 22 6 6.4713 -2.6677 0.6252 23 6 5.5422 -2.2645 -0.5401 24 1 5.6997 -1.2191 -0.8055 25 6 5.7874 -3.1654 -1.7521 26 9 4.8687 -2.8520 -2.7596 27 9 7.0878 -2.9644 -2.2272 28 9 5.6300 -4.5041 -1.3775 29 1 -0.4850 0.8399 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5374 -2.5628 2.1002 32 1 4.2702 -4.0698 1.4719 33 1 6.2330 -1.0374 5.8343 34 1 3.9273 -1.2226 7.1233 35 1 7.3427 -2.0138 0.6603 36 1 6.7815 -3.7078 0.5238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099216414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:56 Heat of formation + Delta-G solvation = -101.080045 kcal Electronic energy + Delta-G solvation = -27801.605020 eV Core-core repulsion = 23293.646051 eV Total energy + Delta-G solvation = -4507.958969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.12640 -48.59434 -48.58237 -43.54464 -40.95591 -38.95482 -35.94031 -33.85196 -33.02379 -32.32432 -31.51180 -29.45784 -27.38689 -25.93164 -24.56857 -23.22403 -22.59635 -21.85881 -20.58153 -19.81828 -19.53843 -19.34187 -19.13259 -18.42819 -17.89805 -16.89502 -16.84055 -16.51291 -16.13650 -15.78324 -15.46257 -15.44634 -15.01929 -14.95061 -14.82286 -14.74366 -14.67004 -14.60567 -14.53971 -14.10832 -13.92130 -13.48873 -13.19439 -13.03103 -12.73161 -12.53982 -12.38626 -12.07676 -11.82656 -11.61837 -11.38741 -11.07730 -10.46366 -10.12973 -9.96646 -9.32242 -8.02929 -5.37365 0.52896 1.26686 1.35898 1.36209 1.42017 1.51242 1.83092 2.22473 2.32043 2.45102 2.70918 2.79119 2.93495 3.27844 3.36042 3.51426 3.64308 3.70515 3.93563 4.01703 4.19392 4.21261 4.42419 4.50874 4.67729 4.73996 4.78310 4.80829 5.00427 5.21273 5.47542 5.75597 6.18598 6.21273 6.34378 6.80979 7.02275 7.08626 7.75230 7.93078 9.17545 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009041 B = 0.007063 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.297738 B = 3963.457088 C = 6118.977648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.049 4.049 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.220 4.220 8 H 0.070 0.930 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.083 0.917 12 C 0.076 3.924 13 N -0.604 5.604 14 C 0.620 3.380 15 O -0.569 6.569 16 C -0.044 4.044 17 C -0.206 4.206 18 C 0.013 3.987 19 N -0.372 5.372 20 H 0.461 0.539 21 N -0.269 5.269 22 C 0.119 3.881 23 C -0.161 4.161 24 H 0.129 0.871 25 C 0.474 3.526 26 F -0.184 7.184 27 F -0.178 7.178 28 F -0.177 7.177 29 H 0.257 0.743 30 H 0.364 0.636 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.235 0.765 35 H 0.102 0.898 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.433 -6.723 8.553 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.241 4.241 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.351 4.351 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.067 3.933 11 H 0.100 0.900 12 C -0.049 4.049 13 N -0.336 5.336 14 C 0.409 3.591 15 O -0.448 6.448 16 C -0.204 4.204 17 C -0.234 4.234 18 C -0.132 4.132 19 N -0.088 5.088 20 H 0.308 0.692 21 N -0.106 5.106 22 C -0.004 4.004 23 C -0.182 4.182 24 H 0.147 0.853 25 C 0.419 3.581 26 F -0.165 7.165 27 F -0.159 7.159 28 F -0.158 7.158 29 H 0.066 0.934 30 H 0.197 0.803 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.251 0.749 35 H 0.121 0.879 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.087 -7.033 7.984 15.367 hybrid contribution 0.143 1.358 0.161 1.375 sum 11.230 -5.676 8.145 14.989 Atomic orbital electron populations 1.69834 1.06700 1.26382 1.59617 1.25241 0.95796 1.00247 1.02807 0.85670 0.78470 0.81176 0.77949 1.20497 1.22516 1.18918 1.18943 0.81672 0.93718 1.40774 0.91173 1.42723 1.02894 1.02669 1.89653 1.21190 0.88408 0.89224 0.94491 0.89951 1.23609 0.84281 0.99417 0.97565 1.48644 1.13371 1.61239 1.10336 1.16771 0.85868 0.76091 0.80327 1.90734 1.19861 1.51724 1.82450 1.21842 0.91747 1.10049 0.96722 1.22030 1.01151 1.08107 0.92110 1.23617 0.88245 1.01680 0.99621 1.43647 1.13914 1.44454 1.06762 0.69154 1.73643 1.08701 1.20577 1.07706 1.22302 0.93462 1.03816 0.80808 1.23745 0.99621 1.01767 0.93047 0.85289 1.19992 0.73821 0.79703 0.84556 1.93225 1.67039 1.92772 1.63472 1.93194 1.38033 1.94884 1.89810 1.93178 1.95289 1.36159 1.91176 0.93414 0.80277 0.87642 0.89383 0.81407 0.74896 0.87943 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.79 13.97 21.65 0.30 -59.49 16 2 C -0.05 -2.74 5.50 84.86 0.47 -2.28 16 3 Si 0.94 44.73 27.74 68.60 1.90 46.64 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 7 C -0.22 -11.66 10.45 84.04 0.88 -10.79 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.74 -32.02 4.94 -318.66 -1.57 -33.59 16 10 C 0.18 6.11 2.99 45.89 0.14 6.25 16 11 H 0.08 2.90 7.37 -2.39 -0.02 2.88 16 12 C 0.08 2.49 6.40 86.53 0.55 3.04 16 13 N -0.60 -19.21 3.32 -811.49 -2.69 -21.90 16 14 C 0.62 21.71 7.92 86.75 0.69 22.40 16 15 O -0.57 -21.88 17.19 -3.95 -0.07 -21.95 16 16 C -0.04 -1.41 7.01 42.46 0.30 -1.11 16 17 C -0.21 -5.07 10.81 22.41 0.24 -4.83 16 18 C 0.01 0.22 12.02 83.54 1.00 1.22 16 19 N -0.37 -7.77 6.83 -57.51 -0.39 -8.17 16 20 H 0.46 6.47 8.96 -219.99 -1.97 4.50 16 21 N -0.27 -8.14 9.30 -48.18 -0.45 -8.59 16 22 C 0.12 3.13 6.38 86.54 0.55 3.68 16 23 C -0.16 -4.51 2.84 -9.89 -0.03 -4.53 16 24 H 0.13 3.60 7.64 -2.39 -0.02 3.58 16 25 C 0.47 12.54 2.53 71.98 0.18 12.72 16 26 F -0.18 -5.68 16.93 44.97 0.76 -4.92 16 27 F -0.18 -4.36 17.17 44.97 0.77 -3.59 16 28 F -0.18 -4.49 16.05 44.97 0.72 -3.76 16 29 H 0.26 15.16 8.31 -92.72 -0.77 14.39 16 30 H 0.36 15.80 5.36 -92.71 -0.50 15.30 16 31 H 0.11 3.96 5.44 -2.39 -0.01 3.95 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.23 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.10 2.61 7.88 -2.39 -0.02 2.59 16 36 H 0.10 2.32 7.22 -2.38 -0.02 2.30 16 Total: -1.00 -72.81 319.51 2.91 -69.90 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -1.35 Total: 23.64 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 4.97 Total: 25.77 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -4.80 Total: -131.73 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 2.26 Total: -12.27 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.64 kcal Total: -72.81 2.91 -69.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099216414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.177 kcal (2) G-P(sol) polarization free energy of solvation -72.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds