Wall clock time and date at job start Tue Mar 31 2020 11:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00486 * 2 1 4 4 C 1.50705 * 109.46815 * 269.99710 * 3 2 1 5 5 H 1.08003 * 119.99621 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00057 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99917 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00162 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46871 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47032 * 119.99910 * 8 6 4 11 11 H 1.48496 * 109.47349 * 240.00260 * 8 6 4 12 12 C 1.34785 * 120.00013 * 179.97438 * 2 1 3 13 13 O 1.21353 * 120.00054 * 174.34077 * 12 2 1 14 14 C 1.49354 * 119.99723 * 354.34266 * 12 2 1 15 15 O 1.21380 * 120.00006 * 359.70145 * 14 12 2 16 16 N 1.34776 * 119.99848 * 179.69594 * 14 12 2 17 17 C 1.39756 * 119.99833 * 185.17898 * 16 14 12 18 18 C 1.39192 * 120.10885 * 326.54995 * 17 16 14 19 19 C 1.38216 * 120.13197 * 179.97438 * 18 17 16 20 20 C 1.38034 * 120.41242 * 0.02562 * 19 18 17 21 21 C 1.39627 * 119.95877 * 0.02562 * 20 19 18 22 22 C 1.38213 * 120.10067 * 146.56484 * 17 16 14 23 23 C 1.50778 * 133.38915 * 0.02562 * 22 17 16 24 24 O 1.45396 * 106.45362 * 179.97438 * 23 22 17 25 25 C 1.34462 * 108.93270 * 0.04678 * 24 23 22 26 26 O 1.21464 * 124.88099 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47068 * 264.06910 * 1 2 3 28 28 H 1.09002 * 109.46704 * 24.06850 * 1 2 3 29 29 H 1.08997 * 109.47275 * 144.06828 * 1 2 3 30 30 H 1.08997 * 109.46879 * 29.99532 * 3 2 1 31 31 H 1.08994 * 109.47605 * 149.99665 * 3 2 1 32 32 H 0.97002 * 119.99517 * 180.02562 * 7 6 4 33 33 H 0.96993 * 120.00060 * 5.19078 * 16 14 12 34 34 H 1.08002 * 119.93439 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.79308 * 180.02562 * 19 18 17 36 36 H 1.08007 * 120.02049 * 179.97438 * 20 19 18 37 37 H 1.08997 * 110.07318 * 299.23475 * 23 22 17 38 38 H 1.09001 * 110.07113 * 60.70856 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0959 -2.2417 6 6 3.1262 2.8777 -1.6729 7 7 3.5536 3.6178 -0.6733 8 14 3.4383 3.4164 -3.4341 9 1 2.8611 2.4159 -4.3675 10 1 2.8003 4.7368 -3.6683 11 1 4.9008 3.5252 -3.6668 12 6 2.1389 -1.1673 0.0005 13 8 3.3480 -1.1699 -0.1031 14 6 1.3975 -2.4575 0.1286 15 8 0.1886 -2.4545 0.2377 16 7 2.0708 -3.6250 0.1230 17 6 1.3715 -4.8350 0.1336 18 6 0.1602 -4.9354 0.8119 19 6 -0.5320 -6.1317 0.8223 20 6 -0.0300 -7.2353 0.1625 21 6 1.1847 -7.1466 -0.5203 22 6 1.8808 -5.9357 -0.5291 23 6 3.1304 -6.1702 -1.3396 24 8 3.0866 -7.5577 -1.7719 25 6 1.9624 -8.1260 -1.3014 26 8 1.6355 -9.2802 -1.4915 27 1 -0.3633 -0.1062 1.0222 28 1 -0.3633 0.9384 -0.4191 29 1 -0.3634 -0.8321 -0.6030 30 1 1.6085 2.0283 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0298 4.4441 -0.8507 33 1 3.0407 -3.6254 0.1117 34 1 -0.2395 -4.0769 1.3311 35 1 -1.4716 -6.2033 1.3500 36 1 -0.5760 -8.1671 0.1751 37 1 3.1440 -5.5088 -2.2058 38 1 4.0133 -5.9980 -0.7240 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117517485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:55 Heat of formation + Delta-G solvation = -90.664183 kcal Electronic energy + Delta-G solvation = -25788.111882 eV Core-core repulsion = 21790.168568 eV Total energy + Delta-G solvation = -3997.943314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02735 -40.82559 -38.98748 -37.90475 -37.57884 -35.82338 -34.61709 -32.69041 -32.26652 -30.41427 -28.21147 -27.58899 -26.40031 -25.13020 -24.22824 -22.70127 -22.44038 -20.63933 -19.84197 -18.33664 -17.81129 -17.20360 -17.01808 -16.76608 -16.53725 -16.23557 -15.84173 -15.54473 -15.21895 -14.81309 -14.48819 -14.32974 -14.01552 -13.76482 -13.71591 -13.30731 -13.18001 -12.70318 -12.51175 -12.22893 -12.05039 -11.97888 -11.41938 -11.29917 -11.06275 -11.00896 -10.84400 -10.70428 -10.62672 -10.29257 -9.76962 -9.44923 -9.01662 -8.65139 -8.57188 -7.95463 -6.18533 -4.24196 0.18533 0.62762 1.62042 2.14440 2.38021 2.69793 3.21512 3.22481 3.29394 3.30472 3.34180 3.51294 3.69537 3.78414 4.32753 4.42871 4.52652 4.68209 4.73366 4.81440 4.92108 5.02144 5.16500 5.16923 5.55934 5.65750 5.78332 5.86647 5.93045 5.98654 6.22091 6.31540 6.43151 6.63820 6.87864 7.09387 7.13419 7.22394 7.58030 7.76951 8.01103 8.03614 8.44285 8.80014 9.41431 10.89763 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002947 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.550964 B = 9499.414904 C =10354.333156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.559 5.559 3 C 0.242 3.758 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.519 6.519 14 C 0.512 3.488 15 O -0.498 6.498 16 N -0.654 5.654 17 C 0.175 3.825 18 C -0.082 4.082 19 C -0.106 4.106 20 C -0.050 4.050 21 C -0.176 4.176 22 C -0.133 4.133 23 C 0.094 3.906 24 O -0.316 6.316 25 C 0.525 3.475 26 O -0.453 6.453 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.425 0.575 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -17.406 4.134 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.124 3.876 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.274 3.726 13 O -0.397 6.397 14 C 0.296 3.704 15 O -0.372 6.372 16 N -0.301 5.301 17 C 0.080 3.920 18 C -0.102 4.102 19 C -0.124 4.124 20 C -0.069 4.069 21 C -0.178 4.178 22 C -0.136 4.136 23 C 0.019 3.981 24 O -0.231 6.231 25 C 0.367 3.633 26 O -0.338 6.338 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.263 0.737 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.545 -17.720 3.955 19.299 hybrid contribution 0.566 0.580 -0.898 1.210 sum -5.978 -17.140 3.057 18.408 Atomic orbital electron populations 1.22064 0.79386 1.03478 1.01655 1.48158 1.07679 1.06733 1.66485 1.19558 0.92621 0.77196 0.98245 1.21391 1.37052 1.06630 0.91856 0.92158 1.24932 0.95113 0.96208 0.97714 1.69933 1.38077 1.14312 1.30808 0.86392 0.78147 0.78425 0.84183 1.19727 1.20839 1.20747 1.19424 0.87550 0.84215 0.81451 1.90761 1.13248 1.86338 1.49332 1.21113 0.87730 0.85615 0.75953 1.90674 1.13945 1.86991 1.45591 1.43285 1.11667 1.03178 1.71978 1.16830 0.94147 0.83919 0.97057 1.21749 0.93186 0.99154 0.96149 1.21146 1.00437 0.91592 0.99243 1.20886 0.92759 0.99422 0.93846 1.20584 0.98347 0.94592 1.04320 1.20490 0.98690 0.94611 0.99805 1.22388 0.96347 0.79697 0.99620 1.87292 1.40874 1.25831 1.69104 1.20495 0.79441 0.86616 0.76763 1.90885 1.69569 1.16450 1.56941 0.92994 0.90885 0.90046 0.94000 0.93454 0.92551 0.73666 0.82416 0.83964 0.84424 0.86119 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 9.26 59.85 0.55 1.81 16 2 N -0.56 -11.22 2.86 -183.51 -0.52 -11.74 16 3 C 0.24 5.91 5.09 -5.19 -0.03 5.88 16 4 C -0.53 -14.25 9.39 -34.44 -0.32 -14.58 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.26 13.29 55.43 0.74 -24.53 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.49 9.28 7.72 -11.63 -0.09 9.19 16 13 O -0.52 -11.11 16.12 5.49 0.09 -11.02 16 14 C 0.51 7.48 7.62 -11.63 -0.09 7.39 16 15 O -0.50 -7.32 10.59 5.47 0.06 -7.26 16 16 N -0.65 -7.49 5.32 -10.39 -0.06 -7.54 16 17 C 0.18 1.83 6.31 -83.90 -0.53 1.30 16 18 C -0.08 -0.81 8.72 -39.24 -0.34 -1.15 16 19 C -0.11 -0.84 10.01 -39.66 -0.40 -1.24 16 20 C -0.05 -0.44 10.10 -39.14 -0.40 -0.83 16 21 C -0.18 -1.81 6.27 -105.09 -0.66 -2.47 16 22 C -0.13 -1.27 6.30 -104.06 -0.66 -1.93 16 23 C 0.09 0.74 7.92 36.04 0.29 1.03 16 24 O -0.32 -3.45 11.14 -39.50 -0.44 -3.89 16 25 C 0.52 6.35 8.59 34.48 0.30 6.64 16 26 O -0.45 -6.71 18.04 -18.91 -0.34 -7.05 16 27 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 29 H 0.08 1.26 5.85 -51.93 -0.30 0.96 16 30 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.42 4.27 8.29 -40.82 -0.34 3.93 16 34 H 0.16 1.65 6.08 -52.49 -0.32 1.33 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -32.43 337.45 -6.73 -39.16 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.85 Total: 0.20 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -2.47 Total: 12.66 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.16 Total: -43.81 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.63 Total: -29.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.43 -6.73 -39.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117517485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.504 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds