Wall clock time and date at job start Tue Mar 31 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29954 * 126.28641 * 2 1 4 4 O 1.21296 * 110.24846 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81433 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.55151 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47206 * 270.02833 * 6 5 4 8 8 C 1.35502 * 117.00407 * 179.97438 * 7 6 5 9 9 C 1.39157 * 119.51738 * 179.97438 * 8 7 6 10 10 C 1.36952 * 119.40283 * 180.02562 * 9 8 7 11 11 C 1.40318 * 118.46426 * 359.97438 * 10 9 8 12 12 C 1.47519 * 120.49871 * 179.97438 * 11 10 9 13 13 O 1.21619 * 119.99546 * 139.13811 * 12 11 10 14 14 N 1.34771 * 119.99926 * 319.13575 * 12 11 10 15 15 C 1.46500 * 119.99706 * 4.66510 * 14 12 11 16 16 C 1.36908 * 119.99892 * 184.65533 * 14 12 11 17 17 H 1.07996 * 119.99898 * 21.54160 * 16 14 12 18 18 C 1.39027 * 119.99648 * 201.53466 * 16 14 12 19 19 N 1.31371 * 120.00300 * 13.48809 * 18 16 14 20 20 Si 1.86807 * 119.99338 * 193.48668 * 18 16 14 21 21 H 1.48500 * 109.47090 * 60.00496 * 20 18 16 22 22 H 1.48497 * 109.46546 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47176 * 300.00190 * 20 18 16 24 24 C 1.39606 * 119.00443 * 0.02562 * 11 10 9 25 25 N 1.31704 * 120.48694 * 359.72271 * 24 11 10 26 26 N 1.31126 * 106.89667 * 0.23141 * 5 4 3 27 27 H 1.08993 * 109.47387 * 89.96780 * 1 2 3 28 28 H 1.09000 * 109.47014 * 209.97065 * 1 2 3 29 29 H 1.09004 * 109.46941 * 329.96832 * 1 2 3 30 30 H 1.09000 * 109.46942 * 150.02853 * 6 5 4 31 31 H 1.09000 * 109.46963 * 30.03201 * 6 5 4 32 32 H 1.07997 * 120.29544 * 359.97438 * 9 8 7 33 33 H 1.07996 * 120.77085 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.47415 * 84.73937 * 15 14 12 35 35 H 1.09011 * 109.46620 * 204.72981 * 15 14 12 36 36 H 1.08995 * 109.47084 * 324.72699 * 15 14 12 37 37 H 0.97002 * 120.00295 * 179.97438 * 19 18 16 38 38 H 1.08005 * 119.75984 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6211 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 8 5.1966 -1.6945 -1.3489 8 6 6.3262 -2.4212 -1.5274 9 6 6.7631 -2.7034 -2.8181 10 6 7.9049 -3.4385 -2.9958 11 6 8.5977 -3.8831 -1.8595 12 6 9.8322 -4.6785 -1.9989 13 8 10.7780 -4.4670 -1.2642 14 7 9.9118 -5.6396 -2.9403 15 6 8.8131 -5.8263 -3.8912 16 6 11.0195 -6.4414 -3.0080 17 1 11.6552 -6.5583 -2.1428 18 6 11.3259 -7.1051 -4.1906 19 7 10.7232 -6.7681 -5.3082 20 14 12.5946 -8.4763 -4.1902 21 1 12.1528 -9.5592 -3.2751 22 1 12.7385 -9.0177 -5.5654 23 1 13.9012 -7.9415 -3.7300 24 6 8.1006 -3.5622 -0.5950 25 7 7.0009 -2.8482 -0.4708 26 7 2.3030 -1.0840 -0.0047 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.6210 -2.3820 0.5124 31 1 5.5845 -0.8855 0.5121 32 1 6.2063 -2.3466 -3.6719 33 1 8.2642 -3.6700 -3.9876 34 1 8.9352 -5.1376 -4.7273 35 1 8.8229 -6.8517 -4.2609 36 1 7.8640 -5.6287 -3.3931 37 1 10.9373 -7.2309 -6.1333 38 1 8.6244 -3.8977 0.2879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118816756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:10 Heat of formation + Delta-G solvation = 60.199338 kcal Electronic energy + Delta-G solvation = -25095.569661 eV Core-core repulsion = 21136.461031 eV Total energy + Delta-G solvation = -3959.108630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.97111 -40.70117 -38.91447 -37.49483 -36.44676 -34.85459 -33.77049 -32.73319 -31.58371 -30.53572 -29.63433 -28.19407 -26.54975 -25.07905 -24.09890 -23.39588 -23.09763 -21.77085 -19.73519 -18.96945 -18.14414 -17.96479 -17.23270 -16.85889 -16.40797 -16.12760 -15.31501 -15.11136 -14.54808 -14.40936 -14.23061 -13.99589 -13.97535 -13.62111 -13.44906 -13.28524 -12.92609 -12.87618 -12.61158 -12.13670 -11.82032 -11.71010 -11.52191 -11.45389 -11.40258 -11.25934 -10.88267 -10.50803 -10.44862 -10.40405 -9.66449 -9.64369 -9.11985 -8.65030 -8.29119 -7.85146 -6.48763 -3.98906 0.59974 1.13265 1.40212 1.72921 2.21132 2.99702 3.11610 3.18049 3.21534 3.35794 3.59083 3.65367 4.01031 4.16451 4.31074 4.48328 4.70178 4.76298 4.94936 4.97365 4.99446 5.04435 5.17260 5.19482 5.22359 5.29176 5.47418 5.55063 5.59880 5.87479 6.10244 6.20996 6.42081 6.45056 6.68428 7.05865 7.09874 7.42382 7.75595 7.83910 7.99414 8.33556 9.03145 9.24716 9.82431 10.55152 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.002205 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892036 B =12693.914763 C =13029.644382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.379 5.379 4 O 0.090 5.910 5 C 0.185 3.815 6 C 0.168 3.832 7 O -0.302 6.302 8 C 0.314 3.686 9 C -0.185 4.185 10 C -0.024 4.024 11 C -0.170 4.170 12 C 0.478 3.522 13 O -0.586 6.586 14 N -0.428 5.428 15 C 0.102 3.898 16 C -0.304 4.304 17 H 0.103 0.897 18 C 0.031 3.969 19 N -0.875 5.875 20 Si 0.931 3.069 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.175 3.825 25 N -0.543 5.543 26 N -0.460 5.460 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.271 0.729 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 9.099 5.731 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.086 5.086 4 O 0.029 5.971 5 C -0.037 4.037 6 C 0.091 3.909 7 O -0.209 6.209 8 C 0.135 3.865 9 C -0.205 4.205 10 C -0.050 4.050 11 C -0.176 4.176 12 C 0.267 3.733 13 O -0.472 6.472 14 N -0.144 5.144 15 C -0.041 4.041 16 C -0.432 4.432 17 H 0.120 0.880 18 C -0.173 4.173 19 N -0.513 5.513 20 Si 0.757 3.243 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.019 3.981 25 N -0.267 5.267 26 N -0.195 5.195 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.700 9.930 6.474 21.302 hybrid contribution 0.959 -0.868 -0.973 1.619 sum -16.740 9.062 5.501 19.815 Atomic orbital electron populations 1.20169 0.82598 1.04811 1.04531 1.25985 1.00766 0.83307 1.00542 1.74671 0.89339 1.23900 1.20736 1.85323 1.22374 1.24536 1.64830 1.28245 0.96190 0.82144 0.97076 1.20550 0.87623 0.98510 0.84231 1.86150 1.39258 1.68296 1.27181 1.19724 0.85589 0.90588 0.90550 1.20669 0.99750 1.04902 0.95199 1.21775 0.91593 0.91319 1.00299 1.21200 0.98725 1.03304 0.94388 1.17591 0.86879 0.82490 0.86377 1.90639 1.38684 1.69873 1.47957 1.43521 1.16484 1.27575 1.26852 1.21833 0.86529 1.04184 0.91561 1.19691 1.03730 1.21284 0.98445 0.87961 1.25400 0.98426 0.99213 0.94288 1.69965 1.42527 1.39944 0.98914 0.85918 0.80581 0.80490 0.77322 1.19716 1.20829 1.19585 1.22503 0.88680 0.89953 0.96965 1.67300 1.10824 1.16274 1.32253 1.71930 0.99625 1.29471 1.18523 0.89124 0.88822 0.89371 0.86509 0.87364 0.84008 0.82748 0.92738 0.89960 0.95060 0.91831 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.00 0.38 -0.01 16 2 C 0.17 1.77 8.22 -156.37 -1.28 0.48 16 3 N -0.38 -4.49 12.16 30.90 0.38 -4.11 16 4 O 0.09 1.04 11.31 18.10 0.20 1.24 16 5 C 0.18 2.04 8.14 -13.06 -0.11 1.94 16 6 C 0.17 1.71 5.92 36.01 0.21 1.92 16 7 O -0.30 -3.83 10.09 -18.20 -0.18 -4.02 16 8 C 0.31 4.46 7.49 -16.95 -0.13 4.33 16 9 C -0.18 -2.56 9.97 -39.71 -0.40 -2.95 16 10 C -0.02 -0.38 7.67 -39.27 -0.30 -0.69 16 11 C -0.17 -3.19 5.18 -104.82 -0.54 -3.73 16 12 C 0.48 11.34 7.29 -12.48 -0.09 11.24 16 13 O -0.59 -15.87 16.66 5.26 0.09 -15.78 16 14 N -0.43 -10.49 3.01 -123.39 -0.37 -10.87 16 15 C 0.10 2.14 7.22 59.85 0.43 2.58 16 16 C -0.30 -8.08 9.27 -14.99 -0.14 -8.22 16 17 H 0.10 2.84 7.44 -52.49 -0.39 2.45 16 18 C 0.03 0.78 5.04 -17.46 -0.09 0.69 16 19 N -0.88 -22.04 10.70 55.50 0.59 -21.45 16 20 Si 0.93 19.78 29.57 -169.99 -5.03 14.76 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C 0.18 2.91 10.82 -17.10 -0.19 2.73 16 25 N -0.54 -8.09 9.19 -12.93 -0.12 -8.21 16 26 N -0.46 -5.44 11.55 -9.87 -0.11 -5.55 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.12 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.16 2.41 5.55 -52.49 -0.29 2.12 16 34 H 0.05 1.13 6.65 -51.93 -0.35 0.78 16 35 H 0.08 1.84 6.53 -51.92 -0.34 1.50 16 36 H 0.03 0.56 5.96 -51.93 -0.31 0.25 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.17 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -31.37 335.49 -5.50 -36.87 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.77 Total: 1.75 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -2.24 Total: 10.30 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.36 Total: -50.18 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.11 Total: -18.55 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.37 -5.50 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118816756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.069 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds