Wall clock time and date at job start Tue Mar 31 2020 12:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29954 * 126.28641 * 2 1 4 4 O 1.21296 * 110.24846 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81433 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.55151 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47206 * 270.02833 * 6 5 4 8 8 C 1.35502 * 117.00407 * 179.97438 * 7 6 5 9 9 C 1.39157 * 119.51738 * 179.97438 * 8 7 6 10 10 C 1.36952 * 119.40283 * 180.02562 * 9 8 7 11 11 C 1.40318 * 118.46426 * 359.97438 * 10 9 8 12 12 C 1.47519 * 120.49871 * 179.97438 * 11 10 9 13 13 O 1.21619 * 119.99546 * 139.13811 * 12 11 10 14 14 N 1.34771 * 119.99926 * 319.13575 * 12 11 10 15 15 C 1.46500 * 119.99706 * 4.66510 * 14 12 11 16 16 C 1.36908 * 119.99892 * 184.65533 * 14 12 11 17 17 H 1.07996 * 119.99898 * 21.54160 * 16 14 12 18 18 C 1.39027 * 119.99648 * 201.53466 * 16 14 12 19 19 N 1.31371 * 120.00300 * 13.48809 * 18 16 14 20 20 Si 1.86807 * 119.99338 * 193.48668 * 18 16 14 21 21 H 1.48500 * 109.47090 * 60.00496 * 20 18 16 22 22 H 1.48497 * 109.46546 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47176 * 300.00190 * 20 18 16 24 24 C 1.39606 * 119.00443 * 0.02562 * 11 10 9 25 25 N 1.31704 * 120.48694 * 359.72271 * 24 11 10 26 26 N 1.31126 * 106.89667 * 0.23141 * 5 4 3 27 27 H 1.08993 * 109.47387 * 89.96780 * 1 2 3 28 28 H 1.09000 * 109.47014 * 209.97065 * 1 2 3 29 29 H 1.09004 * 109.46941 * 329.96832 * 1 2 3 30 30 H 1.09000 * 109.46942 * 150.02853 * 6 5 4 31 31 H 1.09000 * 109.46963 * 30.03201 * 6 5 4 32 32 H 1.07997 * 120.29544 * 359.97438 * 9 8 7 33 33 H 1.07996 * 120.77085 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.47415 * 84.73937 * 15 14 12 35 35 H 1.09011 * 109.46620 * 204.72981 * 15 14 12 36 36 H 1.08995 * 109.47084 * 324.72699 * 15 14 12 37 37 H 0.97002 * 120.00295 * 179.97438 * 19 18 16 38 38 H 1.08005 * 119.75984 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6211 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 8 5.1966 -1.6945 -1.3489 8 6 6.3262 -2.4212 -1.5274 9 6 6.7631 -2.7034 -2.8181 10 6 7.9049 -3.4385 -2.9958 11 6 8.5977 -3.8831 -1.8595 12 6 9.8322 -4.6785 -1.9989 13 8 10.7780 -4.4670 -1.2642 14 7 9.9118 -5.6396 -2.9403 15 6 8.8131 -5.8263 -3.8912 16 6 11.0195 -6.4414 -3.0080 17 1 11.6552 -6.5583 -2.1428 18 6 11.3259 -7.1051 -4.1906 19 7 10.7232 -6.7681 -5.3082 20 14 12.5946 -8.4763 -4.1902 21 1 12.1528 -9.5592 -3.2751 22 1 12.7385 -9.0177 -5.5654 23 1 13.9012 -7.9415 -3.7300 24 6 8.1006 -3.5622 -0.5950 25 7 7.0009 -2.8482 -0.4708 26 7 2.3030 -1.0840 -0.0047 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.6210 -2.3820 0.5124 31 1 5.5845 -0.8855 0.5121 32 1 6.2063 -2.3466 -3.6719 33 1 8.2642 -3.6700 -3.9876 34 1 8.9352 -5.1376 -4.7273 35 1 8.8229 -6.8517 -4.2609 36 1 7.8640 -5.6287 -3.3931 37 1 10.9373 -7.2309 -6.1333 38 1 8.6244 -3.8977 0.2879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118816756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:09 Heat of formation + Delta-G solvation = 36.807168 kcal Electronic energy + Delta-G solvation = -25096.584021 eV Core-core repulsion = 21136.461031 eV Total energy + Delta-G solvation = -3960.122990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.80492 -41.94703 -40.42760 -38.86230 -37.26381 -36.75336 -34.62171 -34.21391 -33.23283 -31.80158 -30.29571 -29.14043 -28.32552 -26.79106 -25.02689 -24.74092 -24.30021 -22.61049 -21.38979 -19.98442 -19.14650 -19.02472 -18.81729 -18.20381 -17.79755 -17.25846 -16.93639 -16.34142 -16.04399 -15.89982 -15.39981 -15.14809 -15.06942 -14.55829 -14.51425 -14.40982 -14.27758 -13.80121 -13.64158 -13.35830 -13.33308 -13.17378 -13.15215 -12.60137 -12.57162 -12.51250 -12.33617 -12.18106 -12.12302 -11.23840 -11.04270 -10.92214 -10.89526 -10.42682 -9.77533 -9.57975 -8.38907 -5.98971 -0.26164 -0.16857 0.17124 0.90549 1.35263 1.41697 1.43913 1.53851 1.99388 2.07450 2.26556 2.55007 2.70273 2.92569 2.98433 3.11199 3.17698 3.70670 3.82986 3.89367 4.02011 4.07845 4.09721 4.23795 4.39739 4.56517 4.58984 4.61947 4.65431 4.75846 4.84157 4.97950 5.05445 5.15079 5.20618 5.35917 5.42931 5.93656 6.05823 6.43172 6.62879 6.93117 7.11214 7.38625 7.95843 8.63514 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.002205 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892036 B =12693.914763 C =13029.644382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.166 3.834 3 N -0.399 5.399 4 O 0.081 5.919 5 C 0.187 3.813 6 C 0.167 3.833 7 O -0.302 6.302 8 C 0.327 3.673 9 C -0.173 4.173 10 C -0.018 4.018 11 C -0.198 4.198 12 C 0.476 3.524 13 O -0.632 6.632 14 N -0.445 5.445 15 C 0.115 3.885 16 C -0.344 4.344 17 H 0.076 0.924 18 C 0.000 4.000 19 N -0.888 5.888 20 Si 0.991 3.009 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.276 1.276 24 C 0.182 3.818 25 N -0.538 5.538 26 N -0.478 5.478 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.174 0.826 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.277 0.723 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.189 9.573 5.308 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.108 5.108 4 O 0.023 5.977 5 C -0.034 4.034 6 C 0.090 3.910 7 O -0.208 6.208 8 C 0.148 3.852 9 C -0.194 4.194 10 C -0.044 4.044 11 C -0.204 4.204 12 C 0.266 3.734 13 O -0.521 6.521 14 N -0.161 5.161 15 C -0.028 4.028 16 C -0.472 4.472 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.526 5.526 20 Si 0.815 3.185 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.202 1.202 24 C 0.025 3.975 25 N -0.261 5.261 26 N -0.215 5.215 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.192 0.808 33 H 0.175 0.825 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -19.872 10.415 6.032 23.233 hybrid contribution 1.450 -0.872 -0.789 1.867 sum -18.423 9.543 5.243 21.400 Atomic orbital electron populations 1.20414 0.79860 1.06134 1.05781 1.26743 1.02336 0.82594 0.98996 1.74674 0.89536 1.24615 1.22016 1.85302 1.22520 1.24700 1.65134 1.28355 0.96336 0.82109 0.96641 1.20787 0.87866 0.99234 0.83071 1.86145 1.38276 1.67556 1.28826 1.19927 0.85396 0.89334 0.90585 1.20904 0.98735 1.03499 0.96215 1.21746 0.91877 0.91297 0.99431 1.20817 0.98066 1.05106 0.96373 1.18310 0.87981 0.82086 0.85071 1.90584 1.40934 1.71201 1.49371 1.43742 1.16868 1.27659 1.27803 1.21780 0.86791 1.03041 0.91197 1.19640 1.05327 1.23725 0.98500 0.90568 1.26110 0.99971 1.00587 0.93592 1.70018 1.43047 1.40365 0.99146 0.85024 0.77851 0.77810 0.77865 1.19125 1.19389 1.20181 1.22465 0.89012 0.89687 0.96286 1.67361 1.10164 1.16087 1.32527 1.71959 1.00101 1.30190 1.19200 0.87757 0.87600 0.87942 0.85508 0.85569 0.80811 0.82530 0.92651 0.91724 0.92073 0.91305 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.23 0.75 0.11 16 2 C 0.17 3.21 8.22 138.46 1.14 4.35 16 3 N -0.40 -8.88 12.16 -60.32 -0.73 -9.61 16 4 O 0.08 1.76 11.31 74.83 0.85 2.61 16 5 C 0.19 3.78 8.14 88.38 0.72 4.50 16 6 C 0.17 2.97 5.92 71.24 0.42 3.39 16 7 O -0.30 -6.72 10.09 -88.04 -0.89 -7.60 16 8 C 0.33 8.29 7.49 84.82 0.64 8.93 16 9 C -0.17 -4.25 9.97 22.19 0.22 -4.03 16 10 C -0.02 -0.54 7.67 22.47 0.17 -0.37 16 11 C -0.20 -7.34 5.18 -19.99 -0.10 -7.44 16 12 C 0.48 23.21 7.29 86.69 0.63 23.84 16 13 O -0.63 -35.80 16.66 -4.09 -0.07 -35.87 16 14 N -0.44 -22.40 3.01 -662.54 -2.00 -24.39 16 15 C 0.11 4.80 7.22 127.77 0.92 5.72 16 16 C -0.34 -19.00 9.27 84.09 0.78 -18.22 16 17 H 0.08 4.49 7.44 -2.91 -0.02 4.46 16 18 C 0.00 0.02 5.04 84.95 0.43 0.44 16 19 N -0.89 -44.78 10.70 21.68 0.23 -44.55 16 20 Si 0.99 40.84 29.57 68.60 2.03 42.87 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.18 5.90 10.82 85.04 0.92 6.82 16 25 N -0.54 -14.85 9.19 -307.69 -2.83 -17.68 16 26 N -0.48 -10.41 11.55 -303.19 -3.50 -13.91 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.13 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.13 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.16 4.66 5.55 -2.91 -0.02 4.64 16 34 H 0.06 2.27 6.65 -2.39 -0.02 2.26 16 35 H 0.06 2.91 6.53 -2.38 -0.02 2.89 16 36 H 0.06 2.14 5.96 -2.39 -0.01 2.13 16 37 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 38 H 0.17 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -69.20 335.49 1.85 -67.35 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.12 Total: 12.74 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 7.64 Total: 28.04 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -8.83 Total: -110.14 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.11 Total: -40.87 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -69.20 1.85 -67.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118816756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.160 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds