Wall clock time and date at job start Tue Mar 31 2020 11:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3 5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1 6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1 7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2 8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2 9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4 10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4 11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4 12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3 13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1 14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2 16 16 N 1.46504 * 109.46842 * 179.97438 * 15 13 12 17 17 C 1.36833 * 125.06388 * 264.69633 * 16 15 13 18 18 C 1.34232 * 109.92997 * 179.87705 * 17 16 15 19 19 C 1.46489 * 106.99888 * 0.36984 * 18 17 16 20 20 C 1.39628 * 134.03009 * 179.81005 * 19 18 17 21 21 C 1.36626 * 119.76099 * 179.97438 * 20 19 18 22 22 N 1.48020 * 119.73643 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99935 * 0.02562 * 22 21 20 24 24 O 1.21799 * 120.00314 * 180.02562 * 22 21 20 25 25 C 1.38832 * 120.53141 * 0.02562 * 21 20 19 26 26 C 1.37748 * 120.66170 * 0.02562 * 25 21 20 27 27 C 1.37686 * 125.06521 * 84.99688 * 16 15 13 28 28 H 1.08999 * 109.47350 * 173.55599 * 1 2 3 29 29 H 1.09002 * 109.47000 * 293.56035 * 1 2 3 30 30 H 1.09003 * 109.47267 * 53.55672 * 1 2 3 31 31 H 0.96995 * 119.99950 * 355.18999 * 7 6 4 32 32 H 1.09001 * 109.46960 * 299.99017 * 15 13 12 33 33 H 1.08993 * 109.47469 * 59.99580 * 15 13 12 34 34 H 1.08003 * 125.03206 * 359.97438 * 17 16 15 35 35 H 1.08001 * 126.50072 * 180.14629 * 18 17 16 36 36 H 1.07995 * 120.11982 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.66983 * 180.02562 * 25 21 20 38 38 H 1.08002 * 120.10873 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5778 -1.6375 1.1338 6 6 1.7957 -0.1767 2.4795 7 7 1.9545 -0.9199 3.5529 8 14 1.2421 1.5995 2.6466 9 1 2.4318 2.4788 2.7761 10 1 0.4656 1.9913 1.4431 11 1 0.3887 1.7405 3.8538 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9974 1.2518 -2.2506 15 6 2.7181 -0.5772 -3.5496 16 7 2.8562 0.4436 -4.5913 17 6 1.9117 0.7333 -5.5381 18 6 2.3515 1.7187 -6.3365 19 6 3.6903 2.0844 -5.8677 20 6 4.6420 3.0185 -6.2818 21 6 5.8302 3.1173 -5.6148 22 7 6.8385 4.1081 -6.0539 23 8 6.6070 4.8315 -7.0061 24 8 7.8996 4.2000 -5.4630 25 6 6.0996 2.2959 -4.5284 26 6 5.1754 1.3670 -4.1038 27 6 3.9580 1.2504 -4.7671 28 1 -0.3634 -1.0211 -0.1153 29 1 -0.3633 0.4108 0.9420 30 1 -0.3634 0.6105 -0.8267 31 1 2.1699 -1.8614 3.4634 32 1 3.6870 -1.0408 -3.3641 33 1 2.0086 -1.3369 -3.8775 34 1 0.9537 0.2429 -5.6285 35 1 1.8205 2.1563 -7.1689 36 1 4.4395 3.6605 -7.1263 37 1 7.0433 2.3862 -4.0110 38 1 5.3941 0.7329 -3.2574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122407190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:30 Heat of formation + Delta-G solvation = -22.071279 kcal Electronic energy + Delta-G solvation = -25705.986129 eV Core-core repulsion = 21711.017227 eV Total energy + Delta-G solvation = -3994.968903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35074 -41.79166 -39.95326 -37.67488 -36.58037 -36.23204 -33.63421 -33.34976 -31.63906 -30.68001 -29.79194 -27.98427 -26.01752 -25.10009 -23.34252 -22.49430 -21.89443 -20.77755 -20.00001 -19.12333 -18.73987 -18.10529 -17.66773 -17.54045 -17.27155 -16.71216 -16.01244 -15.82287 -14.84888 -14.66540 -14.54561 -14.03429 -13.68545 -13.66341 -13.22928 -13.17541 -12.99624 -12.89520 -12.34750 -12.23340 -11.87022 -11.67922 -11.67841 -11.52125 -11.22480 -11.17353 -10.79967 -10.50890 -10.37141 -10.23414 -10.05668 -9.81667 -9.06868 -8.94002 -8.59591 -8.29366 -6.78870 -4.42812 -0.14593 0.56630 1.35509 1.37763 1.99781 2.28039 2.33973 3.10277 3.23308 3.26343 3.28791 3.40816 3.97934 4.17895 4.24374 4.29432 4.39312 4.61814 4.72509 4.80885 4.94486 4.96116 5.02544 5.05292 5.30989 5.45513 5.58726 5.63472 5.93858 5.97360 6.14229 6.21997 6.24893 6.32818 6.44347 6.56210 6.65848 6.90216 7.08349 7.56721 7.63137 8.01048 8.15261 8.62797 9.25422 10.62876 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.003185 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.612939 B = 8788.370802 C = 9718.894704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.198 3.802 3 H 0.040 0.960 4 C -0.612 4.612 5 H 0.070 0.930 6 C 0.043 3.957 7 N -0.890 5.890 8 Si 1.033 2.967 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.278 1.278 12 O -0.340 6.340 13 C 0.429 3.571 14 O -0.503 6.503 15 C 0.111 3.889 16 N -0.461 5.461 17 C 0.069 3.931 18 C -0.184 4.184 19 C -0.113 4.113 20 C 0.006 3.994 21 C -0.071 4.071 22 N 0.038 4.962 23 O -0.174 6.174 24 O -0.168 6.168 25 C -0.052 4.052 26 C -0.112 4.112 27 C 0.148 3.852 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.274 0.726 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.179 0.821 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 1.113 -20.225 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.145 3.855 3 H 0.058 0.942 4 C -0.649 4.649 5 H 0.088 0.912 6 C -0.164 4.164 7 N -0.522 5.522 8 Si 0.860 3.140 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.203 1.203 12 O -0.255 6.255 13 C 0.269 3.731 14 O -0.391 6.391 15 C -0.012 4.012 16 N -0.143 5.143 17 C -0.054 4.054 18 C -0.207 4.207 19 C -0.119 4.119 20 C -0.013 4.013 21 C -0.155 4.155 22 N 0.554 4.446 23 O -0.387 6.387 24 O -0.383 6.383 25 C -0.072 4.072 26 C -0.133 4.133 27 C 0.039 3.961 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.196 0.804 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.229 1.896 -18.585 18.683 hybrid contribution 0.476 -0.929 -0.969 1.425 sum 0.705 0.967 -19.555 19.591 Atomic orbital electron populations 1.22525 0.97880 1.00873 1.00834 1.21029 0.91010 0.94095 0.79407 0.94192 1.21907 1.41827 1.11804 0.89402 0.91210 1.25668 0.94045 1.05500 0.91149 1.70813 1.42485 1.08599 1.30292 0.84245 0.77905 0.75228 0.76644 1.20575 1.19517 1.20292 1.86543 1.75490 1.42880 1.20622 1.23580 0.76183 0.86600 0.86701 1.90688 1.47641 1.16468 1.84353 1.21325 1.06417 0.89336 0.84153 1.43685 1.13522 1.31494 1.25578 1.22019 0.94497 0.99107 0.89824 1.21688 0.94087 1.00979 1.03988 1.18918 0.96204 0.98622 0.98126 1.20032 0.89054 0.94792 0.97442 1.20404 0.92004 0.99307 1.03809 1.43550 1.01387 1.00282 0.99332 1.94513 1.84446 1.40730 1.19060 1.94525 1.12694 1.74965 1.56097 1.20514 1.00516 0.92539 0.93658 1.20023 0.90915 1.01064 1.01319 1.18460 0.89242 0.92268 0.96124 0.92606 0.91225 0.95097 0.91612 0.85207 0.84589 0.80396 0.82364 0.82939 0.82738 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.83 37.16 0.33 -3.15 16 2 C 0.20 4.65 2.11 -27.89 -0.06 4.59 16 3 H 0.04 0.99 5.79 -51.93 -0.30 0.69 16 4 C -0.61 -16.52 9.18 -34.44 -0.32 -16.83 16 5 H 0.07 2.02 8.06 -52.49 -0.42 1.59 16 6 C 0.04 1.19 5.33 -17.82 -0.09 1.10 16 7 N -0.89 -25.87 13.70 55.43 0.76 -25.11 16 8 Si 1.03 23.99 26.17 -169.99 -4.45 19.54 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -5.85 5.53 56.52 0.31 -5.54 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 O -0.34 -6.85 9.86 -39.25 -0.39 -7.24 16 13 C 0.43 7.12 8.00 36.01 0.29 7.41 16 14 O -0.50 -10.02 15.64 -18.75 -0.29 -10.31 16 15 C 0.11 1.13 6.59 -5.19 -0.03 1.09 16 16 N -0.46 -4.97 2.27 -115.71 -0.26 -5.23 16 17 C 0.07 0.61 11.27 -16.73 -0.19 0.42 16 18 C -0.18 -1.66 11.08 -37.67 -0.42 -2.08 16 19 C -0.11 -1.27 6.37 -105.14 -0.67 -1.94 16 20 C 0.01 0.07 9.55 -39.65 -0.38 -0.31 16 21 C -0.07 -0.87 6.81 -80.31 -0.55 -1.42 16 22 N 0.04 0.53 4.45 33.79 0.15 0.68 16 23 O -0.17 -2.49 18.40 -29.46 -0.54 -3.04 16 24 O -0.17 -2.46 18.42 -29.46 -0.54 -3.00 16 25 C -0.05 -0.59 9.52 -39.54 -0.38 -0.97 16 26 C -0.11 -1.27 10.00 -39.43 -0.39 -1.67 16 27 C 0.15 1.77 6.80 -83.99 -0.57 1.20 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.50 5.06 -51.93 -0.26 1.24 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 32 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.14 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.18 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.15 1.42 7.57 -52.49 -0.40 1.02 16 37 H 0.16 1.54 7.58 -52.49 -0.40 1.14 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -33.43 339.60 -7.86 -41.29 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.98 Total: -0.15 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.43 Total: -12.56 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.65 Total: -29.66 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.77 Total: -23.59 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.45 Total: 19.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.43 -7.86 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122407190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.221 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds