Wall clock time and date at job start Tue Mar 31 2020 11:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3 5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1 6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1 7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2 8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2 9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4 10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4 11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4 12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3 13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1 14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2 16 16 N 1.46504 * 109.46842 * 179.97438 * 15 13 12 17 17 C 1.36833 * 125.06388 * 264.69633 * 16 15 13 18 18 C 1.34232 * 109.92997 * 179.87705 * 17 16 15 19 19 C 1.46489 * 106.99888 * 0.36984 * 18 17 16 20 20 C 1.39628 * 134.03009 * 179.81005 * 19 18 17 21 21 C 1.36626 * 119.76099 * 179.97438 * 20 19 18 22 22 N 1.48020 * 119.73643 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99935 * 0.02562 * 22 21 20 24 24 O 1.21799 * 120.00314 * 180.02562 * 22 21 20 25 25 C 1.38832 * 120.53141 * 0.02562 * 21 20 19 26 26 C 1.37748 * 120.66170 * 0.02562 * 25 21 20 27 27 C 1.37686 * 125.06521 * 84.99688 * 16 15 13 28 28 H 1.08999 * 109.47350 * 173.55599 * 1 2 3 29 29 H 1.09002 * 109.47000 * 293.56035 * 1 2 3 30 30 H 1.09003 * 109.47267 * 53.55672 * 1 2 3 31 31 H 0.96995 * 119.99950 * 355.18999 * 7 6 4 32 32 H 1.09001 * 109.46960 * 299.99017 * 15 13 12 33 33 H 1.08993 * 109.47469 * 59.99580 * 15 13 12 34 34 H 1.08003 * 125.03206 * 359.97438 * 17 16 15 35 35 H 1.08001 * 126.50072 * 180.14629 * 18 17 16 36 36 H 1.07995 * 120.11982 * 359.97438 * 20 19 18 37 37 H 1.08002 * 119.66983 * 180.02562 * 25 21 20 38 38 H 1.08002 * 120.10873 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5778 -1.6375 1.1338 6 6 1.7957 -0.1767 2.4795 7 7 1.9545 -0.9199 3.5529 8 14 1.2421 1.5995 2.6466 9 1 2.4318 2.4788 2.7761 10 1 0.4656 1.9913 1.4431 11 1 0.3887 1.7405 3.8538 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9974 1.2518 -2.2506 15 6 2.7181 -0.5772 -3.5496 16 7 2.8562 0.4436 -4.5913 17 6 1.9117 0.7333 -5.5381 18 6 2.3515 1.7187 -6.3365 19 6 3.6903 2.0844 -5.8677 20 6 4.6420 3.0185 -6.2818 21 6 5.8302 3.1173 -5.6148 22 7 6.8385 4.1081 -6.0539 23 8 6.6070 4.8315 -7.0061 24 8 7.8996 4.2000 -5.4630 25 6 6.0996 2.2959 -4.5284 26 6 5.1754 1.3670 -4.1038 27 6 3.9580 1.2504 -4.7671 28 1 -0.3634 -1.0211 -0.1153 29 1 -0.3633 0.4108 0.9420 30 1 -0.3634 0.6105 -0.8267 31 1 2.1699 -1.8614 3.4634 32 1 3.6870 -1.0408 -3.3641 33 1 2.0086 -1.3369 -3.8775 34 1 0.9537 0.2429 -5.6285 35 1 1.8205 2.1563 -7.1689 36 1 4.4395 3.6605 -7.1263 37 1 7.0433 2.3862 -4.0110 38 1 5.3941 0.7329 -3.2574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122407190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:29 Heat of formation + Delta-G solvation = -40.270171 kcal Electronic energy + Delta-G solvation = -25706.775293 eV Core-core repulsion = 21711.017227 eV Total energy + Delta-G solvation = -3995.758066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32119 -42.69593 -41.34364 -38.59279 -37.72703 -37.65522 -35.45262 -34.35214 -32.72432 -32.30478 -30.63799 -28.89232 -27.12242 -26.91645 -24.25298 -23.78912 -22.89037 -21.89855 -21.29207 -20.07094 -19.99187 -19.76481 -18.95425 -18.59797 -18.43663 -17.54081 -17.35021 -17.09456 -15.92094 -15.73968 -15.45654 -15.42972 -14.97208 -14.75544 -14.66661 -14.34853 -14.21515 -13.89082 -13.78404 -13.45031 -13.23137 -13.09508 -12.72187 -12.61990 -12.40777 -12.29508 -12.26621 -12.20100 -11.87504 -11.69288 -11.54874 -11.11792 -11.05568 -10.68785 -9.79242 -9.06987 -8.95128 -6.60707 -1.14803 -0.25469 0.37036 0.39916 1.05889 1.13751 1.39632 1.41192 1.56706 1.60084 2.01264 2.32492 2.36134 2.86704 3.15992 3.43855 3.52095 3.61018 3.65407 3.82658 4.01944 4.08969 4.16828 4.21231 4.32942 4.47471 4.54712 4.55764 4.71406 4.76588 4.79035 4.86242 5.08229 5.23841 5.35876 5.38236 5.41987 5.74400 5.74903 5.89426 5.96110 6.33419 6.53213 6.72317 7.16031 8.45120 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.003185 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.612939 B = 8788.370802 C = 9718.894704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.199 3.801 3 H 0.028 0.972 4 C -0.617 4.617 5 H 0.036 0.964 6 C 0.000 4.000 7 N -0.920 5.920 8 Si 1.069 2.931 9 H -0.274 1.274 10 H -0.245 1.245 11 H -0.271 1.271 12 O -0.352 6.352 13 C 0.427 3.573 14 O -0.537 6.537 15 C 0.122 3.878 16 N -0.465 5.465 17 C 0.068 3.932 18 C -0.186 4.186 19 C -0.125 4.125 20 C 0.009 3.991 21 C -0.085 4.085 22 N 0.039 4.961 23 O -0.181 6.181 24 O -0.193 6.193 25 C -0.059 4.059 26 C -0.118 4.118 27 C 0.129 3.871 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.262 0.738 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.216 0.784 35 H 0.186 0.814 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 1.137 -22.257 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.144 3.856 3 H 0.046 0.954 4 C -0.654 4.654 5 H 0.055 0.945 6 C -0.201 4.201 7 N -0.554 5.554 8 Si 0.890 3.110 9 H -0.200 1.200 10 H -0.169 1.169 11 H -0.196 1.196 12 O -0.267 6.267 13 C 0.270 3.730 14 O -0.428 6.428 15 C -0.001 4.001 16 N -0.147 5.147 17 C -0.054 4.054 18 C -0.209 4.209 19 C -0.131 4.131 20 C -0.010 4.010 21 C -0.170 4.170 22 N 0.552 4.448 23 O -0.394 6.394 24 O -0.403 6.403 25 C -0.079 4.079 26 C -0.139 4.139 27 C 0.019 3.981 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.172 0.828 33 H 0.199 0.801 34 H 0.232 0.768 35 H 0.203 0.797 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.522 1.912 -20.646 20.790 hybrid contribution 1.020 -1.023 -0.444 1.512 sum -0.502 0.889 -21.090 21.115 Atomic orbital electron populations 1.22402 0.95923 1.01800 1.01401 1.20670 0.92330 0.92826 0.79756 0.95402 1.22052 1.41096 1.10682 0.91582 0.94519 1.26914 0.93638 1.08528 0.91029 1.70915 1.44873 1.08233 1.31341 0.83803 0.78250 0.71111 0.77883 1.20020 1.16912 1.19574 1.86509 1.76059 1.43201 1.20949 1.24814 0.74761 0.86257 0.87154 1.90673 1.49137 1.18094 1.84846 1.21600 1.08549 0.89149 0.80783 1.43870 1.13536 1.31530 1.25761 1.22728 0.95191 0.98807 0.88664 1.22109 0.93029 1.00927 1.04789 1.19253 0.97253 0.98360 0.98214 1.20239 0.88486 0.94808 0.97514 1.20558 0.92164 0.99535 1.04790 1.43789 1.01544 1.00392 0.99071 1.94485 1.84474 1.41173 1.19296 1.94514 1.13545 1.75690 1.56548 1.20641 1.01047 0.92613 0.93645 1.20173 0.90983 1.01125 1.01619 1.18730 0.89833 0.92930 0.96608 0.91896 0.91710 0.93081 0.92876 0.82848 0.80076 0.76768 0.79695 0.81450 0.82089 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.36 8.83 71.98 0.64 -5.73 16 2 C 0.20 9.11 2.11 29.84 0.06 9.17 16 3 H 0.03 1.36 5.79 -2.39 -0.01 1.34 16 4 C -0.62 -33.65 9.18 25.60 0.24 -33.42 16 5 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 6 C 0.00 0.00 5.33 84.66 0.45 0.45 16 7 N -0.92 -54.54 13.70 21.45 0.29 -54.25 16 8 Si 1.07 47.74 26.17 68.60 1.80 49.53 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.25 -9.90 5.53 99.48 0.55 -9.35 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 O -0.35 -13.60 9.86 -51.40 -0.51 -14.11 16 13 C 0.43 13.09 8.00 71.24 0.57 13.66 16 14 O -0.54 -20.28 15.64 21.97 0.34 -19.94 16 15 C 0.12 2.00 6.59 85.63 0.56 2.56 16 16 N -0.46 -8.36 2.27 -519.99 -1.18 -9.54 16 17 C 0.07 0.91 11.27 83.00 0.94 1.85 16 18 C -0.19 -2.69 11.08 23.51 0.26 -2.43 16 19 C -0.12 -2.53 6.37 -20.20 -0.13 -2.66 16 20 C 0.01 0.19 9.55 22.23 0.21 0.40 16 21 C -0.09 -2.08 6.81 36.14 0.25 -1.84 16 22 N 0.04 1.11 4.45 -47.02 -0.21 0.90 16 23 O -0.18 -5.15 18.40 18.88 0.35 -4.81 16 24 O -0.19 -5.78 18.42 18.89 0.35 -5.43 16 25 C -0.06 -1.33 9.52 22.30 0.21 -1.11 16 26 C -0.12 -2.55 10.00 22.37 0.22 -2.32 16 27 C 0.13 2.78 6.80 39.03 0.27 3.05 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.65 5.06 -2.39 -0.01 2.64 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 32 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.18 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.17 2.86 7.57 -2.91 -0.02 2.84 16 37 H 0.16 3.26 7.58 -2.91 -0.02 3.23 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -74.60 339.60 6.89 -67.71 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.91 Total: 8.28 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.75 Total: -18.35 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.10 Total: -62.89 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: 0.53 Total: -44.28 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.80 Total: 49.53 kcal Total: -74.60 6.89 -67.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122407190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.438 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds