Wall clock time and date at job start Tue Mar 31 2020 12:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47165 * 270.00092 * 3 2 1 5 5 H 1.48499 * 109.47213 * 29.99945 * 3 2 1 6 6 H 1.48493 * 109.47114 * 150.00029 * 3 2 1 7 7 C 1.37880 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46885 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.47061 * 60.00436 * 9 7 2 12 12 C 1.34229 * 117.00007 * 89.99947 * 11 9 7 13 13 O 1.20825 * 120.00318 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00071 * 180.02562 * 12 11 9 15 15 C 1.53002 * 109.47010 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47010 * 180.02562 * 15 14 12 17 17 C 1.38216 * 120.01518 * 99.99885 * 16 15 14 18 18 C 1.38215 * 120.02658 * 179.97438 * 17 16 15 19 19 C 1.38274 * 120.05499 * 0.02795 * 18 17 16 20 20 C 1.38183 * 120.02062 * 359.97438 * 19 18 17 21 21 C 1.38443 * 120.01162 * 279.72736 * 16 15 14 22 22 F 1.35097 * 120.02347 * 359.97438 * 21 16 15 23 23 C 1.50693 * 109.47217 * 300.00122 * 9 7 2 24 24 C 1.34512 * 125.79339 * 265.00062 * 23 9 7 25 25 C 1.41376 * 106.84688 * 179.79418 * 24 23 9 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78769 * 85.03221 * 23 9 7 28 28 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46980 * 299.99663 * 14 12 11 30 30 H 1.08995 * 109.47139 * 59.99937 * 14 12 11 31 31 H 1.08997 * 109.47348 * 299.99896 * 15 14 12 32 32 H 1.08995 * 109.46847 * 60.00216 * 15 14 12 33 33 H 1.07998 * 119.98368 * 0.02562 * 17 16 15 34 34 H 1.08003 * 119.97769 * 180.02562 * 18 17 16 35 35 H 1.07994 * 119.98896 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.00721 * 179.97438 * 20 19 18 37 37 H 1.08006 * 126.57585 * 0.04182 * 24 23 9 38 38 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 39 39 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4158 -2.5758 -1.1858 12 6 0.9621 -3.1258 -2.2817 13 8 2.1005 -3.5294 -2.2517 14 6 0.1558 -3.2388 -3.5498 15 6 1.0066 -3.8965 -4.6382 16 6 0.2006 -4.0090 -5.9065 17 6 0.3785 -3.0892 -6.9227 18 6 -0.3603 -3.1924 -8.0863 19 6 -1.2785 -4.2155 -8.2351 20 6 -1.4581 -5.1362 -7.2205 21 6 -0.7144 -5.0371 -6.0566 22 9 -0.8848 -5.9402 -5.0665 23 6 0.3850 -2.5792 1.2302 24 6 0.7172 -3.1774 2.3883 25 6 -0.3792 -3.0102 3.2650 26 6 -1.3193 -2.3271 2.5875 27 8 -0.8496 -2.0659 1.3565 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7301 -3.8461 -3.3642 30 1 -0.1474 -2.2445 -3.8775 31 1 1.8923 -3.2889 -4.8237 32 1 1.3101 -4.8908 -4.3107 33 1 1.0957 -2.2899 -6.8077 34 1 -0.2203 -2.4734 -8.8800 35 1 -1.8555 -4.2949 -9.1445 36 1 -2.1757 -5.9349 -7.3368 37 1 1.6453 -3.6843 2.6077 38 1 -0.4496 -3.3650 4.2826 39 1 -2.2859 -2.0341 2.9699 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123371097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:35 Heat of formation + Delta-G solvation = -110.852480 kcal Electronic energy + Delta-G solvation = -25849.900454 eV Core-core repulsion = 21831.161748 eV Total energy + Delta-G solvation = -4018.738706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.88903 -43.05406 -41.11085 -39.95086 -37.47227 -35.15610 -34.92865 -33.57992 -31.85829 -31.48752 -30.68002 -28.41294 -26.36524 -24.83724 -23.68771 -22.59244 -22.20127 -21.30031 -21.16010 -19.06631 -18.53087 -18.27720 -18.09589 -17.54343 -17.09788 -16.84087 -16.60086 -16.47621 -16.29732 -16.25834 -15.17242 -15.03259 -14.80644 -14.40344 -14.14411 -14.02751 -13.81668 -13.52944 -13.42236 -13.34890 -13.06487 -12.96115 -12.84327 -12.81468 -12.60620 -12.22276 -12.08523 -11.87486 -11.84022 -11.34381 -11.00535 -10.79968 -10.50728 -9.89676 -9.59278 -9.09248 -8.23121 -6.54520 0.19641 0.28630 1.17312 1.36853 1.38215 1.46999 1.50156 1.89943 2.19834 2.32879 2.58107 2.68623 3.07222 3.34052 3.62283 3.77246 3.90703 4.02419 4.09707 4.22378 4.33021 4.39135 4.40929 4.43521 4.46865 4.50163 4.70495 4.78857 4.94237 5.05359 5.12182 5.15800 5.22228 5.26979 5.42601 5.44953 5.51128 5.55691 5.78208 5.88266 5.97246 5.99669 6.50019 6.69904 7.10500 7.25038 8.74874 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.003556 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.083234 B = 7872.174251 C = 8981.197120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.043 3.957 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.578 4.578 8 H 0.061 0.939 9 C 0.277 3.723 10 H 0.057 0.943 11 O -0.351 6.351 12 C 0.451 3.549 13 O -0.555 6.555 14 C -0.097 4.097 15 C -0.058 4.058 16 C -0.127 4.127 17 C -0.095 4.095 18 C -0.124 4.124 19 C -0.090 4.090 20 C -0.157 4.157 21 C 0.073 3.927 22 F -0.153 7.153 23 C 0.040 3.960 24 C -0.266 4.266 25 C -0.219 4.219 26 C -0.082 4.082 27 O -0.146 6.146 28 H 0.269 0.731 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.171 0.829 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 -5.359 -13.103 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.166 4.166 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.614 4.614 8 H 0.079 0.921 9 C 0.224 3.776 10 H 0.074 0.926 11 O -0.266 6.266 12 C 0.296 3.704 13 O -0.448 6.448 14 C -0.134 4.134 15 C -0.096 4.096 16 C -0.128 4.128 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.175 4.175 21 C 0.054 3.946 22 F -0.131 7.131 23 C -0.012 4.012 24 C -0.285 4.285 25 C -0.238 4.238 26 C -0.150 4.150 27 O -0.039 6.039 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.800 -5.238 -13.217 15.355 hybrid contribution 0.801 0.469 0.949 1.327 sum -4.999 -4.770 -12.269 14.081 Atomic orbital electron populations 1.70164 1.06716 1.27968 1.43103 1.25813 0.95817 1.02447 0.92521 0.85575 0.78887 0.78675 0.78739 1.19476 1.19813 1.19409 1.21392 0.93079 0.90774 1.56139 0.92104 1.18636 0.85279 0.97153 0.76496 0.92558 1.86705 1.47691 1.71033 1.21206 1.24129 0.86442 0.72933 0.86883 1.90510 1.20721 1.48261 1.85342 1.21319 0.98788 1.04784 0.88555 1.20188 0.97195 1.01829 0.90369 1.19898 0.98731 0.96670 0.97514 1.21272 0.99729 0.97649 0.92595 1.21603 0.95690 0.99110 0.97781 1.21442 0.97470 0.92986 0.98890 1.21436 1.00992 1.02585 0.92503 1.17967 0.99625 0.89616 0.87346 1.91461 1.94592 1.66049 1.61043 1.22749 0.84637 0.95675 0.98161 1.21554 1.02588 1.10013 0.94333 1.21907 0.93878 1.06114 1.01860 1.24735 1.02010 1.03903 0.84368 1.84349 1.27800 1.59833 1.31949 0.92158 0.87748 0.86999 0.89687 0.91293 0.83860 0.82348 0.81761 0.83134 0.83748 0.81170 0.75813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.32 10.64 21.45 0.23 -47.09 16 2 C 0.04 2.33 5.24 84.66 0.44 2.78 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.58 -33.11 8.91 25.60 0.23 -32.88 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.28 15.19 2.57 29.10 0.07 15.26 16 10 H 0.06 3.10 7.16 -2.39 -0.02 3.09 16 11 O -0.35 -18.67 9.25 -48.73 -0.45 -19.12 16 12 C 0.45 21.00 7.92 71.24 0.56 21.56 16 13 O -0.56 -28.00 15.20 21.97 0.33 -27.67 16 14 C -0.10 -3.38 5.79 29.85 0.17 -3.21 16 15 C -0.06 -1.78 4.36 29.85 0.13 -1.65 16 16 C -0.13 -3.21 5.14 -19.82 -0.10 -3.31 16 17 C -0.09 -1.88 9.67 22.26 0.22 -1.66 16 18 C -0.12 -1.82 10.04 22.27 0.22 -1.60 16 19 C -0.09 -1.25 10.05 22.26 0.22 -1.02 16 20 C -0.16 -2.87 10.03 22.31 0.22 -2.65 16 21 C 0.07 1.83 7.24 22.38 0.16 2.00 16 22 F -0.15 -4.42 16.66 44.97 0.75 -3.68 16 23 C 0.04 2.09 5.58 24.83 0.14 2.23 16 24 C -0.27 -11.95 10.81 22.19 0.24 -11.71 16 25 C -0.22 -8.33 10.91 22.19 0.24 -8.09 16 26 C -0.08 -3.24 12.09 66.97 0.81 -2.43 16 27 O -0.15 -7.39 8.89 0.95 0.01 -7.39 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.08 2.57 7.96 -2.39 -0.02 2.55 16 32 H 0.07 2.26 7.90 -2.39 -0.02 2.24 16 33 H 0.14 2.49 8.04 -2.91 -0.02 2.47 16 34 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.14 5.94 8.06 -2.91 -0.02 5.91 16 38 H 0.17 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.23 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -71.39 349.65 7.96 -63.43 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.07 Total: 22.93 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.99 Total: -26.38 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.23 Total: -47.09 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.75 Total: -3.68 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.39 7.96 -63.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123371097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.423 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds