Wall clock time and date at job start Tue Mar 31 2020 12:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46830 * 2 1 4 4 C 1.50699 * 109.47379 * 119.99673 * 2 1 3 5 5 O 1.20820 * 119.99850 * 119.99920 * 4 2 1 6 6 O 1.34234 * 120.00163 * 300.00184 * 4 2 1 7 7 C 1.45192 * 117.00264 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.46848 * 29.99914 * 7 6 4 9 9 C 1.50701 * 109.47267 * 270.00218 * 7 6 4 10 10 H 1.08001 * 120.00118 * 125.09069 * 9 7 6 11 11 C 1.37872 * 119.99735 * 305.09023 * 9 7 6 12 12 N 1.31514 * 120.00192 * 7.24893 * 11 9 7 13 13 Si 1.86802 * 119.99940 * 187.25378 * 11 9 7 14 14 H 1.48501 * 109.47196 * 84.99113 * 13 11 9 15 15 H 1.48498 * 109.47008 * 204.98600 * 13 11 9 16 16 H 1.48495 * 109.47283 * 324.99106 * 13 11 9 17 17 C 1.50699 * 109.47304 * 149.99551 * 7 6 4 18 18 C 1.34508 * 125.79171 * 213.48635 * 17 7 6 19 19 C 1.41388 * 106.83963 * 180.02562 * 18 17 7 20 20 C 1.34508 * 106.84161 * 0.02562 * 19 18 17 21 21 O 1.34309 * 108.42263 * 359.73479 * 20 19 18 22 22 C 1.50700 * 109.47132 * 239.99907 * 2 1 3 23 23 C 1.38212 * 120.01146 * 299.72312 * 22 2 1 24 24 C 1.38225 * 120.02474 * 179.72293 * 23 22 2 25 25 C 1.38263 * 120.05053 * 0.54899 * 24 23 22 26 26 C 1.38180 * 120.02655 * 359.72876 * 25 24 23 27 27 C 1.38437 * 120.01435 * 119.99560 * 22 2 1 28 28 F 1.35103 * 120.02505 * 0.02864 * 27 22 2 29 29 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46698 * 299.99992 * 1 2 3 31 31 H 1.08999 * 109.47404 * 60.00065 * 1 2 3 32 32 H 0.97002 * 120.00156 * 180.02562 * 12 11 9 33 33 H 1.08000 * 126.58034 * 0.03916 * 18 17 7 34 34 H 1.07998 * 126.57644 * 179.97438 * 19 18 17 35 35 H 1.08004 * 125.79088 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.99025 * 0.02562 * 23 22 2 37 37 H 1.08006 * 119.97367 * 180.27807 * 24 23 22 38 38 H 1.08002 * 119.98881 * 179.74899 * 25 24 23 39 39 H 1.08001 * 120.01174 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6926 1.1196 6 8 1.7082 -0.2517 2.4497 7 6 2.2269 -0.9861 3.5897 8 1 3.1797 -1.4440 3.3239 9 6 1.2460 -2.0601 3.9839 10 1 1.5688 -3.0887 4.0493 11 6 -0.0635 -1.7296 4.2611 12 7 -0.4927 -0.5054 4.0449 13 14 -1.2282 -3.0207 4.9438 14 1 -1.0819 -3.0883 6.4200 15 1 -2.6265 -2.6566 4.6012 16 1 -0.9021 -4.3435 4.3530 17 6 2.4290 -0.0413 4.7462 18 6 3.3984 -0.1302 5.6744 19 6 3.2139 0.9529 6.5644 20 6 2.1425 1.6385 6.1270 21 8 1.6744 1.0349 5.0222 22 6 2.0324 -0.7104 -1.2304 23 6 1.7033 -2.0353 -1.4465 24 6 2.1592 -2.6856 -2.5779 25 6 2.9541 -2.0149 -3.4889 26 6 3.2891 -0.6920 -3.2722 27 6 2.8282 -0.0379 -2.1420 28 9 3.1555 1.2554 -1.9287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -1.4139 -0.2728 4.2403 33 1 4.1698 -0.8841 5.7293 34 1 3.8169 1.1846 7.4298 35 1 1.7313 2.5266 6.5838 36 1 1.0858 -2.5614 -0.7336 37 1 1.8979 -3.7196 -2.7481 38 1 3.3131 -2.5251 -4.3706 39 1 3.9097 -0.1682 -3.9842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123464388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:41 Heat of formation + Delta-G solvation = -104.123337 kcal Electronic energy + Delta-G solvation = -26758.983129 eV Core-core repulsion = 22740.536221 eV Total energy + Delta-G solvation = -4018.446908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.94896 -43.12017 -41.37451 -39.79594 -37.33762 -35.37353 -34.82740 -33.63546 -31.77367 -31.46249 -30.39311 -28.41371 -26.19534 -25.09831 -23.77798 -23.22768 -22.35239 -21.27116 -20.94100 -18.95957 -18.71526 -18.28332 -18.19402 -17.25337 -17.06448 -16.97615 -16.58224 -16.38558 -16.24226 -16.22432 -15.18897 -14.95452 -14.83568 -14.55987 -14.13854 -13.83193 -13.66449 -13.51452 -13.43387 -13.17830 -13.06991 -13.03577 -12.94711 -12.84742 -12.81745 -12.21063 -12.17449 -11.90704 -11.81229 -11.21232 -10.98513 -10.72315 -10.56044 -9.90117 -9.63566 -9.12807 -8.21705 -6.50435 0.15315 0.28592 1.12425 1.36901 1.37546 1.46321 1.49732 1.87546 2.16781 2.33367 2.51281 2.72112 3.08925 3.27273 3.39979 3.72152 3.92650 4.04034 4.14263 4.20251 4.29286 4.36098 4.40431 4.44076 4.47800 4.59496 4.80232 4.82868 4.93803 5.08948 5.10238 5.16076 5.20049 5.27174 5.40828 5.42093 5.50432 5.56347 5.77913 5.85834 5.94075 5.99026 6.50575 6.63766 7.12565 7.27757 8.76766 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.004529 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.790145 B = 6181.202058 C = 7231.579513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.041 4.041 3 H 0.112 0.888 4 C 0.457 3.543 5 O -0.547 6.547 6 O -0.334 6.334 7 C 0.279 3.721 8 H 0.054 0.946 9 C -0.578 4.578 10 H 0.060 0.940 11 C 0.047 3.953 12 N -0.840 5.840 13 Si 0.951 3.049 14 H -0.273 1.273 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.035 3.965 18 C -0.262 4.262 19 C -0.215 4.215 20 C -0.081 4.081 21 O -0.159 6.159 22 C -0.119 4.119 23 C -0.075 4.075 24 C -0.129 4.129 25 C -0.081 4.081 26 C -0.154 4.154 27 C 0.083 3.917 28 F -0.147 7.147 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.268 0.732 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 1.913 -10.900 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.060 4.060 3 H 0.130 0.870 4 C 0.301 3.699 5 O -0.440 6.440 6 O -0.249 6.249 7 C 0.226 3.774 8 H 0.072 0.928 9 C -0.613 4.613 10 H 0.078 0.922 11 C -0.162 4.162 12 N -0.472 5.472 13 Si 0.775 3.225 14 H -0.199 1.199 15 H -0.197 1.197 16 H -0.195 1.195 17 C -0.017 4.017 18 C -0.281 4.281 19 C -0.234 4.234 20 C -0.148 4.148 21 O -0.053 6.053 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.147 4.147 25 C -0.099 4.099 26 C -0.172 4.172 27 C 0.064 3.936 28 F -0.126 7.126 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.244 0.756 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.792 1.938 -11.030 11.542 hybrid contribution -0.322 -0.533 1.190 1.343 sum 2.471 1.405 -9.840 10.242 Atomic orbital electron populations 1.21614 0.89895 1.02824 1.03637 1.19844 0.99517 0.99831 0.86843 0.86970 1.23780 0.76832 0.82900 0.86356 1.90512 1.38059 1.27432 1.87964 1.86707 1.68235 1.55615 1.14310 1.18633 0.94802 0.86194 0.77744 0.92845 1.21312 0.95483 0.93208 1.51336 0.92190 1.25712 0.99207 0.97464 0.93789 1.70199 1.16698 1.18921 1.41380 0.85697 0.78240 0.79594 0.78990 1.19861 1.19676 1.19548 1.22902 0.90797 0.88190 0.99826 1.21571 1.03129 1.04035 0.99354 1.21937 1.01098 0.97140 1.03246 1.24753 0.98265 1.01785 0.90016 1.84285 1.48607 1.33784 1.38641 1.19454 1.01164 0.96035 0.95373 1.20941 0.98496 0.92520 0.97367 1.21522 0.98235 1.01503 0.93473 1.21448 0.95622 0.92933 0.99899 1.21425 1.02615 0.96584 0.96587 1.17771 0.99470 0.79029 0.97306 1.91445 1.91138 1.34976 1.95033 0.92756 0.91811 0.88987 0.92277 0.83619 0.80988 0.75574 0.86913 0.82853 0.81039 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.94 71.98 0.64 -3.55 16 2 C -0.04 -1.54 2.99 -12.29 -0.04 -1.58 16 3 H 0.11 4.02 7.13 -2.39 -0.02 4.00 16 4 C 0.46 21.67 7.09 71.24 0.50 22.18 16 5 O -0.55 -27.85 14.31 21.98 0.31 -27.53 16 6 O -0.33 -17.64 8.66 -48.57 -0.42 -18.07 16 7 C 0.28 15.11 2.58 29.10 0.08 15.19 16 8 H 0.05 2.93 7.16 -2.38 -0.02 2.92 16 9 C -0.58 -32.61 8.87 25.60 0.23 -32.38 16 10 H 0.06 3.42 7.82 -2.91 -0.02 3.39 16 11 C 0.05 2.56 5.23 84.65 0.44 3.01 16 12 N -0.84 -46.02 11.21 21.45 0.24 -45.78 16 13 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.04 1.78 5.74 24.83 0.14 1.92 16 18 C -0.26 -11.49 10.81 22.19 0.24 -11.25 16 19 C -0.22 -7.94 10.91 22.19 0.24 -7.70 16 20 C -0.08 -3.08 12.09 66.97 0.81 -2.27 16 21 O -0.16 -7.87 9.65 1.77 0.02 -7.85 16 22 C -0.12 -3.97 4.41 -19.82 -0.09 -4.06 16 23 C -0.08 -2.34 7.93 22.26 0.18 -2.16 16 24 C -0.13 -2.97 10.04 22.27 0.22 -2.75 16 25 C -0.08 -1.52 10.04 22.26 0.22 -1.30 16 26 C -0.15 -3.36 10.03 22.31 0.22 -3.14 16 27 C 0.08 2.45 7.25 22.37 0.16 2.61 16 28 F -0.15 -4.51 16.19 44.97 0.73 -3.78 16 29 H 0.05 1.90 7.41 -2.39 -0.02 1.88 16 30 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.15 5.85 8.06 -2.91 -0.02 5.83 16 34 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.23 6.29 8.06 -2.91 -0.02 6.27 16 36 H 0.11 3.87 7.52 -2.91 -0.02 3.85 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.53 345.76 8.19 -61.33 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 1.07 Total: 24.30 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 4.21 Total: -27.24 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.24 Total: -45.78 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.09 Total: -53.45 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.73 Total: -3.78 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -69.53 8.19 -61.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.791 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds