Wall clock time and date at job start Tue Mar 31 2020 12:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46943 * 2 1 4 4 C 1.50698 * 109.47587 * 239.99545 * 2 1 3 5 5 O 1.20823 * 120.00362 * 240.00605 * 4 2 1 6 6 O 1.34233 * 120.00086 * 59.99809 * 4 2 1 7 7 C 1.45196 * 117.00227 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.47113 * 30.00328 * 7 6 4 9 9 C 1.50705 * 109.46940 * 149.99944 * 7 6 4 10 10 H 1.07996 * 119.99927 * 95.08388 * 9 7 6 11 11 C 1.37873 * 120.00145 * 275.08250 * 9 7 6 12 12 N 1.31511 * 120.00302 * 185.19311 * 11 9 7 13 13 Si 1.86805 * 120.00123 * 5.19224 * 11 9 7 14 14 H 1.48500 * 109.46905 * 84.98665 * 13 11 9 15 15 H 1.48502 * 109.47146 * 204.99036 * 13 11 9 16 16 H 1.48500 * 109.46938 * 324.98913 * 13 11 9 17 17 C 1.50693 * 109.47219 * 270.00035 * 7 6 4 18 18 C 1.34513 * 125.78941 * 143.25401 * 17 7 6 19 19 C 1.41376 * 106.84407 * 180.02562 * 18 17 7 20 20 C 1.34514 * 106.83958 * 359.97438 * 19 18 17 21 21 O 1.34299 * 125.79160 * 323.27943 * 17 7 6 22 22 C 1.50703 * 109.47008 * 119.99558 * 2 1 3 23 23 C 1.38218 * 120.01234 * 60.00166 * 22 2 1 24 24 C 1.38223 * 120.02277 * 179.97438 * 23 22 2 25 25 C 1.38267 * 120.05203 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02988 * 0.02562 * 25 24 23 27 27 C 1.38437 * 120.00985 * 239.72694 * 22 2 1 28 28 F 1.35100 * 120.02841 * 359.97438 * 27 22 2 29 29 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47313 * 300.00673 * 1 2 3 31 31 H 1.08999 * 109.46813 * 60.00975 * 1 2 3 32 32 H 0.96993 * 120.00723 * 179.97438 * 12 11 9 33 33 H 1.08009 * 126.58079 * 359.97438 * 18 17 7 34 34 H 1.08003 * 126.58413 * 180.02562 * 19 18 17 35 35 H 1.08003 * 125.79262 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.98741 * 359.97438 * 23 22 2 37 37 H 1.08004 * 119.97069 * 179.97438 * 24 23 22 38 38 H 1.07999 * 119.98327 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.01801 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1194 6 8 1.7082 -0.2520 -2.4496 7 6 2.2270 -0.9866 -3.5895 8 1 2.3404 -2.0375 -3.3235 9 6 1.2686 -0.8618 -4.7459 10 1 1.4231 -0.0997 -5.4954 11 6 0.1947 -1.7204 -4.8470 12 7 -0.5827 -1.6793 -5.9069 13 14 -0.1563 -2.9424 -3.4783 14 1 -0.9646 -2.2831 -2.4213 15 1 -0.9086 -4.0987 -4.0280 16 1 1.1255 -3.4168 -2.8976 17 6 3.5668 -0.4208 -3.9842 18 6 4.6185 -1.1293 -4.4330 19 6 5.6593 -0.2051 -4.6805 20 6 5.1813 1.0129 -4.3687 21 8 3.9135 0.8761 -3.9470 22 6 2.0323 -0.7103 1.2306 23 6 1.6986 -2.0336 1.4496 24 6 2.1596 -2.6855 2.5779 25 6 2.9546 -2.0147 3.4889 26 6 3.2887 -0.6915 3.2726 27 6 2.8329 -0.0393 2.1390 28 9 3.1647 1.2523 1.9229 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -1.3381 -2.2836 -5.9782 33 1 4.6601 -2.1990 -4.5761 34 1 6.6483 -0.4331 -5.0500 35 1 5.7248 1.9432 -4.4443 36 1 1.0774 -2.5584 0.7390 37 1 1.8980 -3.7194 2.7485 38 1 3.3138 -2.5250 4.3703 39 1 3.9092 -0.1676 3.9844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123464389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:44 Heat of formation + Delta-G solvation = -91.979538 kcal Electronic energy + Delta-G solvation = -26827.593590 eV Core-core repulsion = 22809.673276 eV Total energy + Delta-G solvation = -4017.920314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.92236 -41.84165 -40.08226 -38.73544 -35.86916 -34.21996 -33.12062 -32.29741 -30.64974 -30.50688 -29.40326 -27.14746 -24.91838 -23.30411 -22.70209 -22.09831 -21.08259 -20.01957 -19.38120 -17.73406 -17.51387 -17.18537 -16.69415 -16.26814 -16.08205 -15.59419 -15.46622 -15.08733 -14.98752 -14.46963 -14.20846 -13.85222 -13.36908 -13.22506 -13.04296 -12.73522 -12.43474 -12.27865 -12.12932 -12.11775 -12.00963 -11.93276 -11.62845 -11.41096 -11.04885 -11.02780 -10.91334 -10.14076 -9.84452 -9.75155 -9.63838 -9.25024 -9.02893 -8.97087 -8.68990 -7.75173 -6.52957 -4.62266 1.08916 1.18958 2.42743 2.85956 3.05310 3.14217 3.19541 3.24405 3.41409 3.69471 3.79535 4.07344 4.22059 4.46034 4.67710 4.85343 4.92987 5.13401 5.22220 5.26988 5.33116 5.36438 5.54367 5.63535 5.74044 5.83731 5.92105 5.94800 6.01173 6.06287 6.22072 6.27675 6.35587 6.39715 6.43105 6.55779 6.73618 6.84258 7.06412 7.13146 7.40312 7.87837 8.03039 8.56670 8.59374 9.02930 10.55546 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.005465 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.082168 B = 5122.532985 C = 6501.088302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 H 0.115 0.885 4 C 0.452 3.548 5 O -0.517 6.517 6 O -0.350 6.350 7 C 0.245 3.755 8 H 0.087 0.913 9 C -0.503 4.503 10 H 0.091 0.909 11 C 0.094 3.906 12 N -0.857 5.857 13 Si 0.861 3.139 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.251 1.251 17 C 0.031 3.969 18 C -0.226 4.226 19 C -0.211 4.211 20 C -0.070 4.070 21 O -0.168 6.168 22 C -0.099 4.099 23 C -0.058 4.058 24 C -0.131 4.131 25 C -0.093 4.093 26 C -0.158 4.158 27 C 0.106 3.894 28 F -0.138 7.138 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.276 0.724 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.194 0.806 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 0.851 15.348 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 H 0.133 0.867 4 C 0.294 3.706 5 O -0.407 6.407 6 O -0.267 6.267 7 C 0.194 3.806 8 H 0.104 0.896 9 C -0.539 4.539 10 H 0.109 0.891 11 C -0.115 4.115 12 N -0.492 5.492 13 Si 0.686 3.314 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.176 1.176 17 C -0.020 4.020 18 C -0.246 4.246 19 C -0.230 4.230 20 C -0.138 4.138 21 O -0.063 6.063 22 C -0.100 4.100 23 C -0.076 4.076 24 C -0.149 4.149 25 C -0.111 4.111 26 C -0.177 4.177 27 C 0.086 3.914 28 F -0.117 7.117 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.210 0.790 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.871 0.769 15.285 16.061 hybrid contribution 0.221 -0.539 0.307 0.658 sum 5.092 0.230 15.592 16.404 Atomic orbital electron populations 1.21783 0.90966 1.03208 1.03745 1.19959 0.98669 1.00633 0.88211 0.86696 1.23373 0.77627 0.83029 0.86531 1.90592 1.36075 1.26200 1.87815 1.87151 1.68384 1.57406 1.13711 1.19885 0.85739 0.92143 0.82794 0.89554 1.20830 1.10044 1.18901 1.04076 0.89145 1.25071 0.94678 0.96461 0.95326 1.69851 1.15680 1.36797 1.26873 0.87049 0.80237 0.81249 0.82884 1.18736 1.20243 1.17574 1.23214 0.97129 0.80328 1.01334 1.21384 0.93084 1.00638 1.09448 1.21672 1.00602 0.92928 1.07819 1.23841 0.84121 0.99841 1.05985 1.84072 1.27879 1.28248 1.66129 1.19481 0.99580 0.95413 0.95560 1.20897 0.97736 0.92608 0.96335 1.21172 0.98848 1.00350 0.94540 1.20973 0.97324 0.93475 0.99348 1.21044 1.03252 0.96057 0.97336 1.17500 0.98581 0.79164 0.96122 1.91478 1.90873 1.34529 1.94781 0.92057 0.91285 0.89878 0.91395 0.83992 0.84183 0.78967 0.85270 0.85334 0.85175 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.06 -0.93 2.99 -92.92 -0.28 -1.21 16 3 H 0.12 1.83 7.13 -51.93 -0.37 1.46 16 4 C 0.45 9.61 7.09 36.00 0.26 9.86 16 5 O -0.52 -11.88 14.33 -18.75 -0.27 -12.15 16 6 O -0.35 -8.30 9.37 -41.82 -0.39 -8.70 16 7 C 0.25 6.16 1.74 -29.04 -0.05 6.11 16 8 H 0.09 2.22 4.75 -51.93 -0.25 1.97 16 9 C -0.50 -13.94 9.23 -34.44 -0.32 -14.25 16 10 H 0.09 2.72 8.05 -52.49 -0.42 2.30 16 11 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 12 N -0.86 -24.29 13.96 55.43 0.77 -23.51 16 13 Si 0.86 20.26 27.35 -169.99 -4.65 15.61 16 14 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.25 -5.93 6.13 56.52 0.35 -5.59 16 17 C 0.03 0.74 6.16 -35.63 -0.22 0.52 16 18 C -0.23 -4.83 10.81 -39.71 -0.43 -5.26 16 19 C -0.21 -3.82 10.91 -39.70 -0.43 -4.25 16 20 C -0.07 -1.26 12.09 29.42 0.36 -0.91 16 21 O -0.17 -3.75 10.64 2.93 0.03 -3.72 16 22 C -0.10 -1.54 4.40 -104.55 -0.46 -2.00 16 23 C -0.06 -0.84 7.93 -39.59 -0.31 -1.15 16 24 C -0.13 -1.53 10.04 -39.58 -0.40 -1.93 16 25 C -0.09 -0.98 10.04 -39.59 -0.40 -1.37 16 26 C -0.16 -1.85 10.03 -39.51 -0.40 -2.24 16 27 C 0.11 1.52 7.25 -39.42 -0.29 1.23 16 28 F -0.14 -2.04 16.19 2.25 0.04 -2.01 16 29 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.14 2.82 8.06 -52.48 -0.42 2.40 16 34 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.19 2.49 8.06 -52.48 -0.42 2.07 16 36 H 0.13 1.93 7.52 -52.49 -0.39 1.54 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -31.53 345.06 -6.79 -38.32 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.39 Total: 7.08 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.13 Total: -16.12 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.77 Total: -23.51 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.63 Total: -24.56 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.65 Total: 15.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.53 -6.79 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds