Wall clock time and date at job start Tue Mar 31 2020 12:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46943 * 2 1 4 4 C 1.50698 * 109.47587 * 239.99545 * 2 1 3 5 5 O 1.20823 * 120.00362 * 240.00605 * 4 2 1 6 6 O 1.34233 * 120.00086 * 59.99809 * 4 2 1 7 7 C 1.45196 * 117.00227 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.47113 * 30.00328 * 7 6 4 9 9 C 1.50705 * 109.46940 * 149.99944 * 7 6 4 10 10 H 1.07996 * 119.99927 * 95.08388 * 9 7 6 11 11 C 1.37873 * 120.00145 * 275.08250 * 9 7 6 12 12 N 1.31511 * 120.00302 * 185.19311 * 11 9 7 13 13 Si 1.86805 * 120.00123 * 5.19224 * 11 9 7 14 14 H 1.48500 * 109.46905 * 84.98665 * 13 11 9 15 15 H 1.48502 * 109.47146 * 204.99036 * 13 11 9 16 16 H 1.48500 * 109.46938 * 324.98913 * 13 11 9 17 17 C 1.50693 * 109.47219 * 270.00035 * 7 6 4 18 18 C 1.34513 * 125.78941 * 143.25401 * 17 7 6 19 19 C 1.41376 * 106.84407 * 180.02562 * 18 17 7 20 20 C 1.34514 * 106.83958 * 359.97438 * 19 18 17 21 21 O 1.34299 * 125.79160 * 323.27943 * 17 7 6 22 22 C 1.50703 * 109.47008 * 119.99558 * 2 1 3 23 23 C 1.38218 * 120.01234 * 60.00166 * 22 2 1 24 24 C 1.38223 * 120.02277 * 179.97438 * 23 22 2 25 25 C 1.38267 * 120.05203 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02988 * 0.02562 * 25 24 23 27 27 C 1.38437 * 120.00985 * 239.72694 * 22 2 1 28 28 F 1.35100 * 120.02841 * 359.97438 * 27 22 2 29 29 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47313 * 300.00673 * 1 2 3 31 31 H 1.08999 * 109.46813 * 60.00975 * 1 2 3 32 32 H 0.96993 * 120.00723 * 179.97438 * 12 11 9 33 33 H 1.08009 * 126.58079 * 359.97438 * 18 17 7 34 34 H 1.08003 * 126.58413 * 180.02562 * 19 18 17 35 35 H 1.08003 * 125.79262 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.98741 * 359.97438 * 23 22 2 37 37 H 1.08004 * 119.97069 * 179.97438 * 24 23 22 38 38 H 1.07999 * 119.98327 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.01801 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1194 6 8 1.7082 -0.2520 -2.4496 7 6 2.2270 -0.9866 -3.5895 8 1 2.3404 -2.0375 -3.3235 9 6 1.2686 -0.8618 -4.7459 10 1 1.4231 -0.0997 -5.4954 11 6 0.1947 -1.7204 -4.8470 12 7 -0.5827 -1.6793 -5.9069 13 14 -0.1563 -2.9424 -3.4783 14 1 -0.9646 -2.2831 -2.4213 15 1 -0.9086 -4.0987 -4.0280 16 1 1.1255 -3.4168 -2.8976 17 6 3.5668 -0.4208 -3.9842 18 6 4.6185 -1.1293 -4.4330 19 6 5.6593 -0.2051 -4.6805 20 6 5.1813 1.0129 -4.3687 21 8 3.9135 0.8761 -3.9470 22 6 2.0323 -0.7103 1.2306 23 6 1.6986 -2.0336 1.4496 24 6 2.1596 -2.6855 2.5779 25 6 2.9546 -2.0147 3.4889 26 6 3.2887 -0.6915 3.2726 27 6 2.8329 -0.0393 2.1390 28 9 3.1647 1.2523 1.9229 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -1.3381 -2.2836 -5.9782 33 1 4.6601 -2.1990 -4.5761 34 1 6.6483 -0.4331 -5.0500 35 1 5.7248 1.9432 -4.4443 36 1 1.0774 -2.5584 0.7390 37 1 1.8980 -3.7194 2.7485 38 1 3.3138 -2.5250 4.3703 39 1 3.9092 -0.1676 3.9844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123464389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:44 Heat of formation + Delta-G solvation = -108.909699 kcal Electronic energy + Delta-G solvation = -26828.327737 eV Core-core repulsion = 22809.673276 eV Total energy + Delta-G solvation = -4018.654461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.99417 -43.46202 -41.64405 -39.92372 -37.62206 -35.54291 -35.11492 -33.94168 -32.33683 -31.52589 -30.49006 -28.95119 -26.26688 -24.95643 -23.86901 -23.36117 -22.65028 -21.53641 -20.98600 -19.56295 -18.92505 -18.57252 -18.28826 -17.80147 -17.32490 -16.96383 -16.73464 -16.64017 -16.44203 -16.21429 -15.32191 -15.16026 -14.81554 -14.74889 -14.37969 -14.15789 -14.01977 -13.72185 -13.67111 -13.46709 -13.32865 -13.18894 -13.05170 -12.97636 -12.86397 -12.26726 -12.02965 -11.98423 -11.81136 -11.63133 -11.41486 -11.04414 -10.82710 -9.96739 -9.69007 -9.37553 -8.63025 -6.78975 0.09096 0.22755 0.81374 1.16157 1.18354 1.21980 1.30540 1.66701 1.87054 2.08313 2.21194 2.62199 2.89665 3.21709 3.29123 3.63132 3.77258 3.93537 4.00553 4.06776 4.13039 4.14462 4.21912 4.34783 4.36494 4.37422 4.69305 4.72367 4.86784 4.88457 4.98600 5.02136 5.03566 5.09305 5.17062 5.18487 5.35317 5.44132 5.57697 5.67382 5.90774 5.96366 6.26440 6.33312 6.83548 6.90473 8.50393 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.005465 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.082168 B = 5122.532985 C = 6501.088302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 H 0.119 0.881 4 C 0.447 3.553 5 O -0.536 6.536 6 O -0.362 6.362 7 C 0.256 3.744 8 H 0.076 0.924 9 C -0.521 4.521 10 H 0.049 0.951 11 C 0.053 3.947 12 N -0.898 5.898 13 Si 0.914 3.086 14 H -0.248 1.248 15 H -0.259 1.259 16 H -0.257 1.257 17 C -0.019 4.019 18 C -0.229 4.229 19 C -0.214 4.214 20 C -0.058 4.058 21 O -0.192 6.192 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.128 4.128 25 C -0.080 4.080 26 C -0.153 4.153 27 C 0.085 3.915 28 F -0.147 7.147 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.283 0.717 33 H 0.148 0.852 34 H 0.181 0.819 35 H 0.245 0.755 36 H 0.116 0.884 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 0.312 18.423 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 H 0.137 0.863 4 C 0.291 3.709 5 O -0.426 6.426 6 O -0.279 6.279 7 C 0.205 3.795 8 H 0.093 0.907 9 C -0.557 4.557 10 H 0.067 0.933 11 C -0.152 4.152 12 N -0.534 5.534 13 Si 0.736 3.264 14 H -0.171 1.171 15 H -0.184 1.184 16 H -0.181 1.181 17 C -0.070 4.070 18 C -0.249 4.249 19 C -0.233 4.233 20 C -0.125 4.125 21 O -0.089 6.089 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.146 4.146 25 C -0.098 4.098 26 C -0.172 4.172 27 C 0.066 3.934 28 F -0.125 7.125 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.166 0.834 34 H 0.199 0.801 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.173 0.827 38 H 0.189 0.811 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.456 0.235 18.364 19.467 hybrid contribution -0.102 -0.306 -0.600 0.681 sum 6.353 -0.071 17.764 18.866 Atomic orbital electron populations 1.21804 0.89544 1.03364 1.04668 1.19990 0.99848 1.00323 0.86603 0.86284 1.24224 0.77093 0.82960 0.86641 1.90558 1.36923 1.27216 1.87930 1.87029 1.68863 1.57262 1.14748 1.19414 0.86070 0.91858 0.82202 0.90690 1.20793 1.11456 1.18492 1.04964 0.93301 1.25749 0.94144 0.97985 0.97339 1.69934 1.16635 1.38269 1.28603 0.86227 0.80118 0.79628 0.80453 1.17145 1.18364 1.18119 1.23046 0.97497 0.81502 1.04918 1.21771 0.93594 1.01541 1.07959 1.22106 1.01544 0.91968 1.07648 1.24955 0.82389 1.02033 1.03088 1.84031 1.30183 1.27684 1.66979 1.19435 1.01345 0.96137 0.95421 1.20961 0.98705 0.92486 0.97582 1.21533 0.98058 1.01546 0.93457 1.21462 0.95539 0.92879 0.99908 1.21442 1.02571 0.96625 0.96527 1.17772 0.99278 0.79124 0.97224 1.91451 1.91014 1.35109 1.94968 0.92266 0.88084 0.91167 0.90722 0.83403 0.80117 0.73900 0.86635 0.82692 0.81065 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.94 71.98 0.64 -3.35 16 2 C -0.05 -1.64 2.99 -12.29 -0.04 -1.68 16 3 H 0.12 3.85 7.13 -2.39 -0.02 3.84 16 4 C 0.45 19.47 7.09 71.24 0.51 19.98 16 5 O -0.54 -25.14 14.33 21.97 0.31 -24.82 16 6 O -0.36 -17.92 9.37 -49.01 -0.46 -18.38 16 7 C 0.26 13.48 1.74 29.10 0.05 13.53 16 8 H 0.08 4.04 4.75 -2.39 -0.01 4.02 16 9 C -0.52 -30.66 9.23 25.60 0.24 -30.42 16 10 H 0.05 3.18 8.05 -2.91 -0.02 3.16 16 11 C 0.05 3.04 5.47 84.65 0.46 3.50 16 12 N -0.90 -52.99 13.96 21.45 0.30 -52.69 16 13 Si 0.91 42.84 27.35 68.60 1.88 44.72 16 14 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.26 -12.15 6.13 99.48 0.61 -11.54 16 17 C -0.02 -0.94 6.16 24.83 0.15 -0.78 16 18 C -0.23 -9.85 10.81 22.19 0.24 -9.61 16 19 C -0.21 -7.32 10.91 22.19 0.24 -7.07 16 20 C -0.06 -1.98 12.09 66.97 0.81 -1.17 16 21 O -0.19 -8.72 10.64 0.21 0.00 -8.72 16 22 C -0.12 -3.71 4.40 -19.82 -0.09 -3.80 16 23 C -0.08 -2.21 7.93 22.26 0.18 -2.03 16 24 C -0.13 -2.61 10.04 22.27 0.22 -2.39 16 25 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 26 C -0.15 -3.06 10.03 22.31 0.22 -2.84 16 27 C 0.09 2.31 7.25 22.38 0.16 2.47 16 28 F -0.15 -4.21 16.19 44.97 0.73 -3.48 16 29 H 0.06 1.73 7.39 -2.39 -0.02 1.72 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.20 8.11 -2.39 -0.02 2.19 16 32 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.15 5.96 8.06 -2.91 -0.02 5.94 16 34 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.25 5.34 8.06 -2.91 -0.02 5.31 16 36 H 0.12 3.45 7.52 -2.91 -0.02 3.42 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.65 345.06 7.97 -65.68 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.98 Total: 24.45 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.23 Total: -26.77 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.30 Total: -52.69 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.14 Total: -51.92 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.73 Total: -3.48 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -73.65 7.97 -65.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.228 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds