Wall clock time and date at job start Tue Mar 31 2020 12:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47218 * 2 1 4 4 C 1.34650 * 116.99883 * 179.97438 * 3 2 1 5 5 O 1.21397 * 119.99941 * 359.97438 * 4 3 2 6 6 C 1.48368 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.30690 * 126.41096 * 359.97438 * 6 4 3 8 8 O 1.21288 * 110.10187 * 180.02562 * 7 6 4 9 9 C 1.33696 * 110.02434 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.44528 * 180.02562 * 9 8 7 11 11 N 1.46498 * 109.46984 * 270.02204 * 10 9 8 12 12 C 1.39078 * 120.00304 * 179.72084 * 11 10 9 13 13 C 1.38749 * 119.65130 * 359.73404 * 12 11 10 14 14 C 1.40783 * 118.66429 * 179.75830 * 13 12 11 15 15 C 1.41549 * 120.99082 * 180.25844 * 14 13 12 16 16 H 1.08005 * 119.99722 * 203.52541 * 15 14 13 17 17 C 1.40021 * 120.00523 * 23.52841 * 15 14 13 18 18 N 1.30751 * 120.00018 * 17.00239 * 17 15 14 19 19 Si 1.86798 * 120.00495 * 197.00982 * 17 15 14 20 20 H 1.48496 * 109.47552 * 89.99511 * 19 17 15 21 21 H 1.48498 * 109.47479 * 209.99835 * 19 17 15 22 22 H 1.48502 * 109.46969 * 329.99536 * 19 17 15 23 23 C 1.41181 * 118.01466 * 0.49724 * 14 13 12 24 24 C 1.36564 * 119.14903 * 359.75887 * 23 14 13 25 25 N 1.32098 * 121.26182 * 359.97438 * 24 23 14 26 26 N 1.30936 * 107.11319 * 0.26033 * 9 8 7 27 27 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46838 * 300.00521 * 1 2 3 29 29 H 1.09005 * 109.46619 * 60.00361 * 1 2 3 30 30 H 1.08994 * 109.47567 * 239.99335 * 2 1 3 31 31 H 1.09007 * 109.46934 * 119.99208 * 2 1 3 32 32 H 1.08996 * 109.47111 * 150.02624 * 10 9 8 33 33 H 1.09004 * 109.46980 * 30.02408 * 10 9 8 34 34 H 0.97000 * 119.99911 * 0.02562 * 11 10 9 35 35 H 1.07996 * 120.66889 * 0.02562 * 13 12 11 36 36 H 0.96994 * 120.00247 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.42782 * 179.77755 * 23 14 13 38 38 H 1.07999 * 119.36911 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0884 0.5826 0.0015 6 6 3.9160 2.9164 0.0000 7 7 3.2405 4.0352 -0.0015 8 8 4.0002 4.9808 -0.0020 9 6 5.2661 4.5509 -0.0004 10 6 6.5036 5.4110 0.0001 11 7 6.9056 5.6890 -1.3809 12 6 8.0252 6.4740 -1.6347 13 6 8.7530 6.9949 -0.5744 14 6 9.8856 7.7825 -0.8551 15 6 10.6668 8.3339 0.1887 16 1 11.2719 9.2095 0.0055 17 6 10.6552 7.7440 1.4585 18 7 10.2083 6.5245 1.6088 19 14 11.2779 8.6994 2.9380 20 1 10.1537 9.4521 3.5502 21 1 11.8425 7.7550 3.9353 22 1 12.3327 9.6507 2.5047 23 6 10.2161 8.0103 -2.2087 24 6 9.4362 7.4601 -3.1854 25 7 8.3829 6.7211 -2.8866 26 7 5.2287 3.2421 -0.0044 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 7.3095 4.8879 0.5148 33 1 6.2936 6.3495 0.5133 34 1 6.3884 5.3291 -2.1184 35 1 8.4591 6.7966 0.4456 36 1 10.1999 6.1160 2.4885 37 1 11.0748 8.6118 -2.4684 38 1 9.6860 7.6317 -4.2220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160064031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:17 Heat of formation + Delta-G solvation = 27.600441 kcal Electronic energy + Delta-G solvation = -24938.079898 eV Core-core repulsion = 20977.557673 eV Total energy + Delta-G solvation = -3960.522224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.05425 -40.79763 -38.60097 -37.24923 -36.26514 -35.45720 -34.10328 -32.91412 -32.03736 -30.60305 -28.86269 -26.74069 -26.37794 -25.94629 -23.75829 -23.22989 -21.88504 -21.32402 -20.68706 -18.72367 -18.53937 -17.87563 -17.75735 -16.98606 -16.74350 -15.98497 -15.72644 -14.85571 -14.60467 -14.50602 -14.26211 -14.07895 -13.79171 -13.58473 -13.26658 -12.98092 -12.61521 -12.56087 -12.51297 -12.16590 -12.10761 -12.08773 -11.52346 -11.43900 -11.29349 -11.20993 -11.03346 -10.89018 -10.59786 -10.25113 -9.97295 -9.53045 -9.15953 -8.06388 -7.95506 -6.90845 -6.62072 -4.61472 0.36516 1.13644 1.60116 2.35248 2.43914 2.77020 2.94205 3.02389 3.05215 3.27344 3.41450 3.58879 3.84725 3.99132 4.44973 4.46797 4.50978 4.64482 4.79649 4.98234 5.14362 5.31683 5.32379 5.48094 5.56731 5.67747 5.74953 5.81187 5.99803 6.59905 6.66304 6.87895 6.97876 7.07286 7.17203 7.45237 7.64230 7.72362 7.80195 7.98576 8.30770 8.61931 8.76769 8.79671 9.64359 10.05908 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002604 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.603225 B =10749.404264 C =11702.942568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.567 3.433 5 O -0.461 6.461 6 C 0.140 3.860 7 N -0.320 5.320 8 O 0.115 5.885 9 C 0.194 3.806 10 C 0.235 3.765 11 N -0.741 5.741 12 C 0.387 3.613 13 C -0.278 4.278 14 C 0.152 3.848 15 C -0.453 4.453 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.784 5.784 19 Si 0.909 3.091 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.297 4.297 24 C 0.133 3.867 25 N -0.619 5.619 26 N -0.420 5.420 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.393 0.607 35 H 0.128 0.872 36 H 0.282 0.718 37 H 0.099 0.901 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -7.578 1.813 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.255 6.255 4 C 0.405 3.595 5 O -0.343 6.343 6 C -0.132 4.132 7 N -0.022 5.022 8 O 0.041 5.959 9 C -0.027 4.027 10 C 0.108 3.892 11 N -0.381 5.381 12 C 0.160 3.840 13 C -0.305 4.305 14 C 0.144 3.856 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.140 4.140 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.322 4.322 24 C -0.019 4.019 25 N -0.342 5.342 26 N -0.154 5.154 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.227 0.773 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.002 -9.002 1.501 18.422 hybrid contribution 0.779 0.478 1.119 1.445 sum -15.224 -8.524 2.620 17.643 Atomic orbital electron populations 1.21829 0.91873 1.03332 1.03949 1.23252 0.95815 0.78602 1.03363 1.86570 1.21578 1.33644 1.83733 1.18629 0.81435 0.85214 0.74204 1.90924 1.60491 1.39893 1.42958 1.24114 0.87252 0.93641 1.08148 1.75083 1.16874 0.95508 1.14738 1.85398 1.15888 1.31212 1.63375 1.29245 0.88619 0.89480 0.95344 1.19654 0.85674 0.96459 0.87386 1.43732 1.31320 1.59144 1.03876 1.17887 0.86110 0.89804 0.90229 1.21487 0.99911 1.11442 0.97615 1.17578 0.89144 0.87441 0.91466 1.19610 1.23492 1.11778 0.93545 0.90090 1.25945 0.93366 0.94158 1.00538 1.69790 1.34427 1.11356 1.25308 0.86293 0.79918 0.80281 0.80172 1.19139 1.20241 1.18536 1.21518 1.04487 1.12103 0.94112 1.21232 0.90163 0.92977 0.97576 1.66656 1.21909 1.25746 1.19897 1.72137 1.15776 1.10448 1.17057 0.89682 0.91193 0.91169 0.90469 0.90482 0.86614 0.88152 0.77265 0.85419 0.90723 0.88278 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.34 -3.94 10.23 -40.36 -0.41 -4.36 16 4 C 0.57 7.97 7.99 34.90 0.28 8.25 16 5 O -0.46 -7.33 16.89 -19.19 -0.32 -7.66 16 6 C 0.14 2.08 8.04 -156.17 -1.26 0.83 16 7 N -0.32 -4.52 12.20 30.93 0.38 -4.14 16 8 O 0.11 1.53 11.29 17.97 0.20 1.74 16 9 C 0.19 2.74 7.86 -13.00 -0.10 2.64 16 10 C 0.24 3.51 5.51 -5.19 -0.03 3.48 16 11 N -0.74 -13.34 5.72 -61.66 -0.35 -13.70 16 12 C 0.39 8.66 7.65 -154.99 -1.19 7.48 16 13 C -0.28 -6.66 8.02 -38.43 -0.31 -6.97 16 14 C 0.15 3.85 5.61 -106.56 -0.60 3.25 16 15 C -0.45 -11.30 9.12 -37.65 -0.34 -11.64 16 16 H 0.08 1.95 7.90 -52.48 -0.41 1.53 16 17 C 0.08 1.86 5.20 -17.34 -0.09 1.76 16 18 N -0.78 -18.58 10.91 55.55 0.61 -17.97 16 19 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.30 -7.01 9.85 -39.07 -0.38 -7.40 16 24 C 0.13 2.97 11.10 -18.04 -0.20 2.77 16 25 N -0.62 -14.38 10.36 -12.82 -0.13 -14.51 16 26 N -0.42 -6.67 11.57 -9.94 -0.12 -6.78 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.12 1.84 7.95 -51.93 -0.41 1.43 16 33 H 0.10 1.35 7.90 -51.93 -0.41 0.94 16 34 H 0.39 6.72 8.59 -40.82 -0.35 6.37 16 35 H 0.13 2.99 4.84 -52.49 -0.25 2.73 16 36 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 37 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -29.17 344.83 -7.53 -36.69 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.94 Total: 8.33 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.60 Total: 4.75 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.38 Total: -57.10 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.53 Total: -10.28 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.17 -7.53 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160064031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.295 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds