Wall clock time and date at job start Tue Mar 31 2020 12:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47218 * 2 1 4 4 C 1.34650 * 116.99883 * 179.97438 * 3 2 1 5 5 O 1.21397 * 119.99941 * 359.97438 * 4 3 2 6 6 C 1.48368 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.30690 * 126.41096 * 359.97438 * 6 4 3 8 8 O 1.21288 * 110.10187 * 180.02562 * 7 6 4 9 9 C 1.33696 * 110.02434 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.44528 * 180.02562 * 9 8 7 11 11 N 1.46498 * 109.46984 * 270.02204 * 10 9 8 12 12 C 1.39078 * 120.00304 * 179.72084 * 11 10 9 13 13 C 1.38749 * 119.65130 * 359.73404 * 12 11 10 14 14 C 1.40783 * 118.66429 * 179.75830 * 13 12 11 15 15 C 1.41549 * 120.99082 * 180.25844 * 14 13 12 16 16 H 1.08005 * 119.99722 * 203.52541 * 15 14 13 17 17 C 1.40021 * 120.00523 * 23.52841 * 15 14 13 18 18 N 1.30751 * 120.00018 * 17.00239 * 17 15 14 19 19 Si 1.86798 * 120.00495 * 197.00982 * 17 15 14 20 20 H 1.48496 * 109.47552 * 89.99511 * 19 17 15 21 21 H 1.48498 * 109.47479 * 209.99835 * 19 17 15 22 22 H 1.48502 * 109.46969 * 329.99536 * 19 17 15 23 23 C 1.41181 * 118.01466 * 0.49724 * 14 13 12 24 24 C 1.36564 * 119.14903 * 359.75887 * 23 14 13 25 25 N 1.32098 * 121.26182 * 359.97438 * 24 23 14 26 26 N 1.30936 * 107.11319 * 0.26033 * 9 8 7 27 27 H 1.08997 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46838 * 300.00521 * 1 2 3 29 29 H 1.09005 * 109.46619 * 60.00361 * 1 2 3 30 30 H 1.08994 * 109.47567 * 239.99335 * 2 1 3 31 31 H 1.09007 * 109.46934 * 119.99208 * 2 1 3 32 32 H 1.08996 * 109.47111 * 150.02624 * 10 9 8 33 33 H 1.09004 * 109.46980 * 30.02408 * 10 9 8 34 34 H 0.97000 * 119.99911 * 0.02562 * 11 10 9 35 35 H 1.07996 * 120.66889 * 0.02562 * 13 12 11 36 36 H 0.96994 * 120.00247 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.42782 * 179.77755 * 23 14 13 38 38 H 1.07999 * 119.36911 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0884 0.5826 0.0015 6 6 3.9160 2.9164 0.0000 7 7 3.2405 4.0352 -0.0015 8 8 4.0002 4.9808 -0.0020 9 6 5.2661 4.5509 -0.0004 10 6 6.5036 5.4110 0.0001 11 7 6.9056 5.6890 -1.3809 12 6 8.0252 6.4740 -1.6347 13 6 8.7530 6.9949 -0.5744 14 6 9.8856 7.7825 -0.8551 15 6 10.6668 8.3339 0.1887 16 1 11.2719 9.2095 0.0055 17 6 10.6552 7.7440 1.4585 18 7 10.2083 6.5245 1.6088 19 14 11.2779 8.6994 2.9380 20 1 10.1537 9.4521 3.5502 21 1 11.8425 7.7550 3.9353 22 1 12.3327 9.6507 2.5047 23 6 10.2161 8.0103 -2.2087 24 6 9.4362 7.4601 -3.1854 25 7 8.3829 6.7211 -2.8866 26 7 5.2287 3.2421 -0.0044 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 7.3095 4.8879 0.5148 33 1 6.2936 6.3495 0.5133 34 1 6.3884 5.3291 -2.1184 35 1 8.4591 6.7966 0.4456 36 1 10.1999 6.1160 2.4885 37 1 11.0748 8.6118 -2.4684 38 1 9.6860 7.6317 -4.2220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160064031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:16 Heat of formation + Delta-G solvation = 8.905115 kcal Electronic energy + Delta-G solvation = -24938.890588 eV Core-core repulsion = 20977.557673 eV Total energy + Delta-G solvation = -3961.332914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -47.21936 -41.81274 -40.32222 -38.25867 -37.54357 -36.81878 -35.84847 -34.15484 -32.72662 -32.37022 -30.44258 -27.95157 -27.78679 -27.65944 -24.79629 -24.14789 -23.40145 -22.61331 -22.29013 -19.99944 -19.70986 -19.34455 -18.92035 -17.89883 -17.80372 -17.51586 -17.44219 -16.41816 -16.01070 -15.77011 -15.40111 -15.37297 -15.12480 -15.01892 -14.42829 -14.26699 -14.01777 -13.77402 -13.65809 -13.43636 -13.13090 -13.08723 -12.82902 -12.73014 -12.64604 -12.57869 -12.38508 -11.92548 -11.86097 -11.74374 -11.62930 -11.22609 -10.78711 -9.87384 -9.77343 -8.64560 -8.29635 -6.47066 -0.77017 -0.03407 0.62200 1.09108 1.14941 1.16723 1.31072 1.46083 1.57472 1.64828 2.25108 2.25987 2.45707 2.64620 2.86931 3.41654 3.80114 3.86642 3.90546 3.90681 4.12545 4.22955 4.28336 4.41450 4.49219 4.58089 4.84651 4.89516 4.89743 4.93894 5.11200 5.21709 5.22644 5.37330 5.65972 6.00576 6.05196 6.05572 6.28561 6.50282 6.57745 6.88975 6.94856 6.99621 7.87730 8.33475 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002604 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.603225 B =10749.404264 C =11702.942568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.339 6.339 4 C 0.571 3.429 5 O -0.486 6.486 6 C 0.130 3.870 7 N -0.316 5.316 8 O 0.130 5.870 9 C 0.207 3.793 10 C 0.240 3.760 11 N -0.732 5.732 12 C 0.388 3.612 13 C -0.297 4.297 14 C 0.121 3.879 15 C -0.485 4.485 16 H 0.078 0.922 17 C 0.044 3.956 18 N -0.806 5.806 19 Si 0.980 3.020 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.318 4.318 24 C 0.132 3.868 25 N -0.633 5.633 26 N -0.443 5.443 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.399 0.601 35 H 0.128 0.872 36 H 0.291 0.709 37 H 0.107 0.893 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -7.683 2.493 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.255 6.255 4 C 0.410 3.590 5 O -0.370 6.370 6 C -0.141 4.141 7 N -0.016 5.016 8 O 0.054 5.946 9 C -0.014 4.014 10 C 0.114 3.886 11 N -0.371 5.371 12 C 0.159 3.841 13 C -0.323 4.323 14 C 0.113 3.887 15 C -0.515 4.515 16 H 0.096 0.904 17 C -0.174 4.174 18 N -0.431 5.431 19 Si 0.801 3.199 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.343 4.343 24 C -0.020 4.020 25 N -0.356 5.356 26 N -0.177 5.177 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.234 0.766 35 H 0.146 0.854 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.146 -9.134 2.176 19.548 hybrid contribution 1.031 0.443 0.857 1.412 sum -16.115 -8.691 3.033 18.558 Atomic orbital electron populations 1.21874 0.89593 1.04981 1.03915 1.23672 0.97511 0.76969 1.03928 1.86586 1.19970 1.35933 1.82963 1.18601 0.82104 0.84595 0.73656 1.90905 1.61217 1.40435 1.44424 1.24301 0.87010 0.94301 1.08453 1.75073 1.16761 0.95408 1.14359 1.85402 1.15475 1.30828 1.62898 1.28862 0.88533 0.88881 0.95099 1.19645 0.85772 0.97371 0.85822 1.43713 1.30062 1.57954 1.05406 1.18057 0.86731 0.89526 0.89799 1.21515 1.00313 1.12430 0.98062 1.18017 0.89960 0.88240 0.92503 1.19844 1.24461 1.12345 0.94857 0.90359 1.26698 0.93277 0.94803 1.02589 1.69815 1.34526 1.12286 1.26497 0.85229 0.79378 0.78805 0.76502 1.18361 1.19453 1.18599 1.21703 1.05428 1.13125 0.94017 1.21727 0.89463 0.91879 0.98942 1.66803 1.22395 1.26286 1.20124 1.72123 1.16601 1.11245 1.17723 0.87134 0.91154 0.91234 0.90030 0.89909 0.87394 0.86206 0.76608 0.85399 0.89799 0.87451 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.76 6.19 71.98 0.45 1.21 16 3 O -0.34 -7.57 10.23 -55.59 -0.57 -8.14 16 4 C 0.57 15.80 7.99 70.52 0.56 16.37 16 5 O -0.49 -15.39 16.89 20.17 0.34 -15.05 16 6 C 0.13 3.80 8.04 137.29 1.10 4.90 16 7 N -0.32 -8.54 12.20 -59.35 -0.72 -9.27 16 8 O 0.13 3.27 11.29 74.36 0.84 4.11 16 9 C 0.21 5.63 7.86 88.36 0.69 6.33 16 10 C 0.24 6.97 5.51 85.63 0.47 7.45 16 11 N -0.73 -25.84 5.72 -348.98 -2.00 -27.84 16 12 C 0.39 17.25 7.65 132.91 1.02 18.27 16 13 C -0.30 -14.32 8.02 23.01 0.18 -14.14 16 14 C 0.12 6.22 5.61 -21.12 -0.12 6.10 16 15 C -0.48 -24.47 9.12 23.52 0.21 -24.25 16 16 H 0.08 3.84 7.90 -2.91 -0.02 3.81 16 17 C 0.04 2.05 5.20 85.29 0.44 2.49 16 18 N -0.81 -38.13 10.91 21.84 0.24 -37.89 16 19 Si 0.98 35.20 29.59 68.60 2.03 37.23 16 20 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 21 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 23 C -0.32 -15.10 9.85 22.60 0.22 -14.88 16 24 C 0.13 5.82 11.10 84.26 0.94 6.76 16 25 N -0.63 -28.97 10.36 -194.47 -2.02 -30.99 16 26 N -0.44 -13.80 11.57 -302.78 -3.50 -17.30 16 27 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.11 3.41 7.95 -2.39 -0.02 3.39 16 33 H 0.12 3.07 7.90 -2.39 -0.02 3.05 16 34 H 0.40 13.24 8.59 -92.71 -0.80 12.44 16 35 H 0.13 6.03 4.84 -2.91 -0.01 6.02 16 36 H 0.29 12.35 8.29 -92.71 -0.77 11.58 16 37 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -62.04 344.83 1.90 -60.14 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.34 Total: 28.93 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.92 Total: 16.05 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -8.00 Total: -123.28 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.61 Total: -19.08 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Total: -62.04 1.90 -60.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160064031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.050 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds