Wall clock time and date at job start Tue Mar 31 2020 12:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99620 * 3 2 1 5 5 H 1.48496 * 109.47178 * 29.99570 * 3 2 1 6 6 H 1.48498 * 109.47247 * 149.99566 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21473 * 120.00341 * 359.72050 * 14 13 12 16 16 C 1.48460 * 119.99746 * 179.72338 * 14 13 12 17 17 C 1.39534 * 120.54763 * 179.97438 * 16 14 13 18 18 C 1.38764 * 118.26008 * 180.02562 * 17 16 14 19 19 C 1.50696 * 120.42486 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.47058 * 90.00085 * 19 18 17 21 21 F 1.39901 * 109.47353 * 209.99956 * 19 18 17 22 22 F 1.39903 * 109.47086 * 330.00523 * 19 18 17 23 23 N 1.32201 * 119.14831 * 0.02562 * 18 17 16 24 24 C 1.31884 * 121.03867 * 359.97438 * 23 18 17 25 25 N 1.31584 * 121.91592 * 359.71965 * 24 23 18 26 26 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 29 29 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 30 30 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 31 31 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 35 35 H 1.07991 * 120.87208 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.04280 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5204 -8.7509 0.0072 16 6 0.3614 -9.6573 0.0129 17 6 0.8139 -10.9773 0.0189 18 6 -0.1292 -11.9951 0.0240 19 6 0.3054 -13.4381 0.0310 20 9 0.4399 -13.8781 1.3522 21 9 -0.6540 -14.2173 -0.6245 22 9 1.5336 -13.5585 -0.6279 23 7 -1.4137 -11.6828 0.0226 24 6 -1.8075 -10.4241 0.0169 25 7 -0.9492 -9.4267 0.0179 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 2.6847 -3.7145 0.8905 29 1 2.6848 -3.7145 -0.8895 30 1 0.4375 -4.7619 -0.8903 31 1 0.4368 -4.7621 0.8897 32 1 2.4549 -6.2024 0.8910 33 1 2.4561 -6.2025 -0.8890 34 1 -0.0768 -7.0810 0.0005 35 1 1.8705 -11.2008 0.0186 36 1 -2.8652 -10.2056 0.0163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162421862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:37 Heat of formation + Delta-G solvation = -145.236567 kcal Electronic energy + Delta-G solvation = -24895.822923 eV Core-core repulsion = 20385.949184 eV Total energy + Delta-G solvation = -4509.873739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.40545 -48.92941 -48.86250 -42.70549 -40.68117 -37.58278 -36.13143 -35.63117 -33.93721 -33.70252 -31.33910 -28.89723 -27.53602 -26.07826 -25.08034 -24.18273 -22.60418 -22.16113 -20.26497 -20.08808 -19.78212 -19.21549 -18.91550 -17.77845 -17.11921 -17.07918 -17.00050 -16.64357 -16.37270 -16.19490 -15.72915 -15.63501 -15.40215 -15.29574 -15.28126 -15.27140 -14.99897 -14.98503 -14.66480 -13.91787 -13.79760 -13.31332 -12.82215 -12.62369 -12.50203 -12.45116 -12.41436 -12.09028 -12.06051 -11.84708 -11.70171 -11.30087 -10.93605 -10.88583 -10.28085 -9.00725 -7.95893 -5.24810 -1.09073 -0.77401 1.00056 1.35211 1.48643 1.50101 1.58516 1.62866 2.17301 2.28416 2.48676 2.53358 2.59277 3.06392 3.08197 3.27487 3.38177 3.44741 3.73418 3.84255 4.08394 4.16456 4.28366 4.44261 4.70171 4.72768 4.75582 4.86807 5.11636 5.22234 5.32556 5.33810 5.50161 6.18574 6.27233 6.44367 6.84425 7.33488 8.08901 8.31769 9.27573 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.001829 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.363215 B =15303.881252 C =15786.814776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.748 5.748 10 C 0.152 3.848 11 C -0.121 4.121 12 C 0.130 3.870 13 N -0.689 5.689 14 C 0.567 3.433 15 O -0.548 6.548 16 C 0.142 3.858 17 C -0.124 4.124 18 C 0.088 3.912 19 C 0.532 3.468 20 F -0.165 7.165 21 F -0.161 7.161 22 F -0.161 7.161 23 N -0.475 5.475 24 C 0.313 3.687 25 N -0.473 5.473 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.422 0.578 35 H 0.181 0.819 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -29.831 0.039 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.025 3.975 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.340 5.340 14 C 0.350 3.650 15 O -0.425 6.425 16 C -0.008 4.008 17 C -0.147 4.147 18 C -0.062 4.062 19 C 0.477 3.523 20 F -0.146 7.146 21 F -0.142 7.142 22 F -0.142 7.142 23 N -0.189 5.189 24 C 0.027 3.973 25 N -0.189 5.189 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.199 0.801 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.206 -29.658 0.053 29.831 hybrid contribution 0.442 0.720 -0.005 0.845 sum -2.764 -28.939 0.048 29.071 Atomic orbital electron populations 1.69800 1.06548 1.26160 1.59405 1.25590 0.96479 1.01179 1.03654 0.85128 0.77711 0.79390 0.77460 1.21364 1.22132 1.19456 1.19648 0.91590 0.85384 1.41327 0.90601 1.42555 1.05766 1.01211 1.89553 1.20691 0.94033 0.84576 0.98226 1.21717 0.98584 0.92141 1.03431 1.21309 0.91387 0.83608 1.03083 1.45807 1.12295 1.04457 1.71487 1.17785 0.86732 0.82876 0.77559 1.90831 1.16105 1.84725 1.50876 1.21544 0.91303 0.93072 0.94877 1.22725 1.04060 0.91997 0.95941 1.21501 0.91475 0.93868 0.99364 1.17542 0.75307 0.84930 0.74566 1.93278 1.95627 1.90471 1.35242 1.93264 1.63543 1.76466 1.80942 1.93274 1.43766 1.96288 1.80900 1.68033 1.15923 1.24872 1.10105 1.26013 1.02215 0.80498 0.88599 1.68465 1.01964 1.38593 1.09894 0.93932 0.79248 0.95734 0.95738 0.90696 0.90710 0.90719 0.90690 0.74015 0.80124 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.62 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -37.01 5.60 -343.44 -1.92 -38.94 16 10 C 0.15 5.64 6.26 86.38 0.54 6.19 16 11 C -0.12 -3.28 5.44 30.59 0.17 -3.11 16 12 C 0.13 2.99 5.67 86.38 0.49 3.48 16 13 N -0.69 -13.82 5.55 -465.37 -2.58 -16.41 16 14 C 0.57 12.36 7.83 86.97 0.68 13.04 16 15 O -0.55 -15.09 16.43 -3.63 -0.06 -15.15 16 16 C 0.14 2.48 6.79 42.00 0.29 2.77 16 17 C -0.12 -1.96 9.07 22.71 0.21 -1.75 16 18 C 0.09 1.34 6.33 42.63 0.27 1.60 16 19 C 0.53 7.76 3.45 71.23 0.25 8.01 16 20 F -0.16 -2.53 17.30 44.97 0.78 -1.75 16 21 F -0.16 -2.55 17.07 44.97 0.77 -1.79 16 22 F -0.16 -2.29 16.54 44.97 0.74 -1.55 16 23 N -0.48 -6.83 10.08 -188.12 -1.90 -8.72 16 24 C 0.31 3.41 12.28 180.92 2.22 5.63 16 25 N -0.47 -6.87 9.70 -189.14 -1.84 -8.71 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.38 19.53 7.67 -92.71 -0.71 18.81 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.42 7.09 7.86 -92.71 -0.73 6.36 16 35 H 0.18 2.57 7.37 -2.92 -0.02 2.55 16 36 H 0.26 0.55 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -68.27 336.76 2.44 -65.83 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.27 Total: 18.60 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.41 Total: 19.10 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -7.96 Total: -130.94 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.06 Total: -15.15 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 2.29 Total: -5.08 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.27 2.44 -65.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162421862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.408 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds