Wall clock time and date at job start Tue Mar 31 2020 11:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39670 * 120.00024 * 2 1 4 4 C 1.38917 * 120.07550 * 179.97438 * 3 2 1 5 5 C 1.38095 * 119.92661 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.07465 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.92646 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47313 * 89.99580 * 7 6 5 9 9 C 1.38533 * 120.00029 * 180.02562 * 8 7 6 10 10 C 1.40038 * 120.45381 * 359.97438 * 9 8 7 11 11 C 1.38798 * 118.59453 * 180.02562 * 10 9 8 12 12 Cl 1.73605 * 120.33625 * 179.97438 * 11 10 9 13 13 N 1.32196 * 119.32752 * 0.02562 * 11 10 9 14 14 C 1.33418 * 120.86071 * 359.97438 * 13 11 10 15 15 C 1.41581 * 119.24178 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00196 * 179.97438 * 15 14 13 17 17 C 1.40054 * 119.99173 * 0.02562 * 15 14 13 18 18 N 1.30690 * 120.00424 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99371 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47543 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47290 * 119.99843 * 19 17 15 22 22 H 1.48503 * 109.47129 * 239.99200 * 19 17 15 23 23 N 1.32574 * 120.44652 * 180.02562 * 9 8 7 24 24 C 1.38285 * 120.15363 * 0.27404 * 6 5 4 25 25 C 1.38111 * 120.06636 * 359.44898 * 24 6 5 26 26 H 1.08999 * 109.47167 * 59.99625 * 1 2 3 27 27 H 1.09002 * 109.47477 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47215 * 299.99641 * 1 2 3 29 29 H 0.96999 * 119.99939 * 180.02562 * 2 1 3 30 30 H 1.08000 * 120.03330 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.96298 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46990 * 330.00228 * 7 6 5 33 33 H 1.08996 * 109.47337 * 210.00124 * 7 6 5 34 34 H 0.96998 * 119.99458 * 0.02562 * 8 7 6 35 35 H 1.08005 * 120.69892 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99931 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.96685 * 179.70471 * 24 6 5 38 38 H 1.08002 * 120.03419 * 180.27115 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 3.5525 1.2114 0.0005 5 6 4.2398 2.4091 0.0011 6 6 3.5469 3.6058 0.0016 7 6 4.3004 4.9109 0.0016 8 7 4.5441 5.3342 -1.3797 9 6 5.2255 6.5135 -1.6328 10 6 5.6850 7.3086 -0.5756 11 6 6.3628 8.4827 -0.8733 12 17 6.9515 9.5029 0.4021 13 7 6.5545 8.8168 -2.1379 14 6 6.1061 8.0409 -3.1263 15 6 6.3310 8.4314 -4.4685 16 1 5.9737 7.8124 -5.2781 17 6 7.0177 9.6201 -4.7461 18 7 7.4505 10.3689 -3.7663 19 14 7.3138 10.1358 -6.5169 20 1 6.7283 9.1233 -7.4319 21 1 6.6748 11.4536 -6.7622 22 1 8.7744 10.2403 -6.7644 23 7 5.4505 6.9051 -2.8792 24 6 2.1640 3.6077 0.0073 25 6 1.4704 2.4135 0.0010 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 4.0942 0.2771 0.0005 31 1 5.3198 2.4112 0.0019 32 1 5.2530 4.7805 0.5150 33 1 3.7116 5.6705 0.5158 34 1 4.2284 4.7886 -2.1169 35 1 5.5156 7.0144 0.4497 36 1 7.9258 11.1923 -3.9586 37 1 1.6259 4.5441 0.0126 38 1 0.3904 2.4156 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164149327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:42 Heat of formation + Delta-G solvation = 52.182037 kcal Electronic energy + Delta-G solvation = -22463.645862 eV Core-core repulsion = 18944.898740 eV Total energy + Delta-G solvation = -3518.747121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94843 -40.40751 -37.71049 -37.32314 -36.17801 -35.17157 -33.21737 -32.03290 -31.77524 -30.27854 -28.31307 -27.49397 -25.52936 -23.96611 -23.51095 -23.12258 -21.71604 -19.78431 -18.55296 -18.24671 -17.89588 -16.98360 -16.58469 -16.13382 -15.79741 -15.65077 -15.47967 -15.14589 -15.08206 -15.03348 -14.61627 -14.40046 -14.21515 -13.89148 -13.36436 -13.13639 -13.08023 -12.87242 -12.74686 -12.74631 -12.24956 -12.00229 -11.88435 -11.85287 -11.57351 -11.00955 -10.91824 -10.84633 -10.09659 -9.82644 -9.39791 -8.76868 -8.42406 -8.30723 -6.77280 0.54190 0.55501 0.66276 1.16074 1.16808 1.43537 1.54254 1.61089 2.22364 2.48188 2.61211 2.77000 3.08552 3.88513 3.89311 3.96838 4.14677 4.27387 4.36123 4.45527 4.49528 4.55538 4.66704 4.68231 4.74461 4.81987 4.91125 4.95546 5.00391 5.14530 5.17997 5.35457 5.39012 5.47647 5.81786 5.90669 6.04737 6.20027 6.42103 6.51992 6.72105 6.78911 6.86028 7.25735 8.22677 8.39238 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.002711 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.703341 B =10327.447837 C =11588.680013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.750 5.750 3 C 0.214 3.786 4 C -0.204 4.204 5 C -0.057 4.057 6 C -0.171 4.171 7 C 0.185 3.815 8 N -0.710 5.710 9 C 0.449 3.551 10 C -0.399 4.399 11 C 0.246 3.754 12 Cl -0.058 7.058 13 N -0.563 5.563 14 C 0.408 3.592 15 C -0.428 4.428 16 H 0.094 0.906 17 C 0.024 3.976 18 N -0.740 5.740 19 Si 1.001 2.999 20 H -0.254 1.254 21 H -0.262 1.262 22 H -0.263 1.263 23 N -0.667 5.667 24 C -0.057 4.057 25 C -0.208 4.208 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.408 0.592 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.139 0.861 36 H 0.284 0.716 37 H 0.125 0.875 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -16.908 7.676 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.109 3.891 4 C -0.226 4.226 5 C -0.077 4.077 6 C -0.174 4.174 7 C 0.062 3.938 8 N -0.346 5.346 9 C 0.201 3.799 10 C -0.432 4.432 11 C 0.068 3.932 12 Cl -0.030 7.030 13 N -0.286 5.286 14 C 0.171 3.829 15 C -0.463 4.463 16 H 0.112 0.888 17 C -0.200 4.200 18 N -0.361 5.361 19 Si 0.820 3.180 20 H -0.177 1.177 21 H -0.187 1.187 22 H -0.187 1.187 23 N -0.399 5.399 24 C -0.076 4.076 25 C -0.231 4.231 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.228 -16.327 7.102 20.534 hybrid contribution 0.235 -0.145 0.295 0.404 sum -9.994 -16.472 7.397 20.638 Atomic orbital electron populations 1.21679 0.79068 1.03853 1.01067 1.44566 1.06545 1.04925 1.81927 1.18031 0.91395 0.87087 0.92597 1.20764 0.92253 0.98857 1.10746 1.20960 1.00026 0.91425 0.95239 1.19504 0.93940 0.93823 1.10123 1.20085 0.98873 0.93107 0.81777 1.44387 1.60936 1.21034 1.08195 1.18512 0.86319 0.86229 0.88829 1.21184 1.21101 1.01120 0.99773 1.21891 0.92038 0.88963 0.90346 1.98281 1.87590 1.69623 1.47483 1.68577 1.27902 1.34574 0.97547 1.19896 0.86224 0.83290 0.93474 1.19703 1.30822 1.05777 0.90024 0.88813 1.27090 0.93314 0.95135 1.04500 1.70238 1.21253 1.09334 1.35292 0.84890 0.79029 0.78954 0.75171 1.17741 1.18700 1.18707 1.68278 1.29431 1.21481 1.20677 1.20968 0.93266 0.98181 0.95216 1.20775 1.00285 0.90926 1.11079 0.93218 0.88597 0.92859 0.75632 0.84442 0.85537 0.91607 0.91661 0.76479 0.84368 0.90472 0.85678 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 9.94 127.77 1.27 2.04 16 2 N -0.75 -9.53 5.89 -360.83 -2.12 -11.65 16 3 C 0.21 3.94 6.65 38.21 0.25 4.20 16 4 C -0.20 -3.88 9.90 22.40 0.22 -3.66 16 5 C -0.06 -1.27 9.69 22.25 0.22 -1.05 16 6 C -0.17 -4.15 5.25 -19.84 -0.10 -4.26 16 7 C 0.18 5.23 5.04 85.63 0.43 5.66 16 8 N -0.71 -25.74 5.70 -348.27 -1.99 -27.72 16 9 C 0.45 21.02 7.71 133.39 1.03 22.05 16 10 C -0.40 -18.36 9.23 22.84 0.21 -18.15 16 11 C 0.25 12.60 7.33 84.77 0.62 13.22 16 12 Cl -0.06 -2.48 29.15 -2.72 -0.08 -2.56 16 13 N -0.56 -32.74 7.86 -185.03 -1.45 -34.19 16 14 C 0.41 24.03 7.37 135.16 1.00 25.03 16 15 C -0.43 -24.13 9.37 23.54 0.22 -23.91 16 16 H 0.09 5.09 7.85 -2.91 -0.02 5.06 16 17 C 0.02 1.23 5.50 85.30 0.47 1.70 16 18 N -0.74 -40.11 11.42 21.84 0.25 -39.86 16 19 Si 1.00 38.22 29.56 68.60 2.03 40.25 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 N -0.67 -36.33 10.39 -191.54 -1.99 -38.32 16 24 C -0.06 -1.28 9.69 22.25 0.22 -1.07 16 25 C -0.21 -4.11 9.31 22.40 0.21 -3.90 16 26 H 0.05 0.48 7.95 -2.39 -0.02 0.47 16 27 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.47 7.95 -2.39 -0.02 0.46 16 29 H 0.41 3.67 8.84 -92.71 -0.82 2.85 16 30 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.07 1.83 7.91 -2.39 -0.02 1.81 16 33 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 34 H 0.40 14.16 8.59 -92.71 -0.80 13.37 16 35 H 0.14 5.43 6.85 -2.91 -0.02 5.41 16 36 H 0.28 13.77 8.29 -92.71 -0.77 13.01 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.13 2.17 6.73 -2.91 -0.02 2.15 16 Total: -1.00 -68.99 344.46 0.41 -68.58 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.49 Total: 27.59 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.26 Total: 17.89 kcal Atomic # 7 Polarization: -144.44 SS G_CDS: -7.31 Total: -151.75 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.08 Total: -2.56 kcal Total: -68.99 0.41 -68.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164149327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.766 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds