Wall clock time and date at job start Tue Mar 31 2020 12:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86794 * 119.99880 * 2 1 4 4 H 1.48506 * 109.47428 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47192 * 30.00386 * 3 2 1 6 6 H 1.48501 * 109.47340 * 150.00054 * 3 2 1 7 7 C 1.40022 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99738 * 163.16312 * 7 2 1 9 9 C 1.41548 * 120.00480 * 343.16057 * 7 2 1 10 10 C 1.41186 * 120.99124 * 336.10888 * 9 7 2 11 11 C 1.36554 * 119.14485 * 180.02562 * 10 9 7 12 12 N 1.32099 * 121.26993 * 359.71803 * 11 10 9 13 13 C 1.32533 * 122.21225 * 0.57580 * 12 11 10 14 14 N 1.39087 * 119.65581 * 179.70377 * 13 12 11 15 15 C 1.48534 * 110.99735 * 119.85162 * 14 13 12 16 16 C 1.54942 * 103.22443 * 159.72319 * 15 14 13 17 17 C 1.54601 * 102.92065 * 322.58593 * 16 15 14 18 18 C 1.52994 * 110.30913 * 263.04362 * 17 16 15 19 19 F 1.39904 * 109.47014 * 295.71609 * 18 17 16 20 20 C 1.53001 * 110.38883 * 140.91519 * 17 16 15 21 21 F 1.39898 * 109.47452 * 304.23525 * 20 17 16 22 22 F 1.39901 * 109.47063 * 64.23926 * 20 17 16 23 23 F 1.39904 * 109.46840 * 184.23560 * 20 17 16 24 24 C 1.47890 * 111.00080 * 237.25123 * 14 13 12 25 25 C 1.38739 * 120.68881 * 359.42631 * 13 12 11 26 26 H 0.97005 * 119.99986 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.42491 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.36532 * 179.97438 * 11 10 9 29 29 H 1.09003 * 110.66692 * 278.15410 * 15 14 13 30 30 H 1.08999 * 110.66571 * 41.28846 * 15 14 13 31 31 H 1.09001 * 110.72391 * 80.94340 * 16 15 14 32 32 H 1.09000 * 110.72564 * 204.22993 * 16 15 14 33 33 H 1.08998 * 109.47597 * 55.71587 * 18 17 16 34 34 H 1.09004 * 109.47031 * 175.72019 * 18 17 16 35 35 H 1.08997 * 109.92215 * 333.50876 * 24 14 13 36 36 H 1.09005 * 109.91951 * 94.80514 * 24 14 13 37 37 H 1.07997 * 120.67007 * 180.25363 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0529 -1.2326 -0.2715 9 6 1.3453 -2.4124 0.3540 10 6 0.1904 -2.3927 1.1659 11 6 -0.4182 -3.5727 1.4853 12 7 0.0499 -4.7268 1.0451 13 6 1.1327 -4.8063 0.2850 14 7 1.5827 -6.0506 -0.1439 15 6 1.5922 -6.1308 -1.6271 16 6 2.5720 -7.2966 -1.9127 17 6 3.6578 -7.1092 -0.8282 18 6 4.8541 -6.3464 -1.4007 19 9 5.4564 -7.1103 -2.4062 20 6 4.1062 -8.4665 -0.2826 21 9 2.9935 -9.1687 0.1928 22 9 4.7192 -9.2001 -1.3040 23 9 5.0159 -8.2716 0.7622 24 6 2.9796 -6.2846 0.2816 25 6 1.8189 -3.6609 -0.0920 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2061 -1.4566 1.5302 28 1 -1.3016 -3.5618 2.1064 29 1 0.5970 -6.3631 -2.0062 30 1 1.9629 -5.2018 -2.0602 31 1 2.0720 -8.2581 -1.7958 32 1 3.0026 -7.2031 -2.9097 33 1 4.5146 -5.3987 -1.8187 34 1 5.5768 -6.1555 -0.6073 35 1 3.4950 -5.3321 0.4040 36 1 2.9940 -6.8409 1.2189 37 1 2.6988 -3.7257 -0.7147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164265857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:14 Heat of formation + Delta-G solvation = -164.304582 kcal Electronic energy + Delta-G solvation = -27566.754049 eV Core-core repulsion = 23036.133497 eV Total energy + Delta-G solvation = -4530.620552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.15552 -47.90454 -47.60808 -47.43060 -39.88607 -37.80177 -34.40775 -33.20272 -30.84478 -29.97748 -28.19864 -26.39832 -26.03440 -25.07531 -22.73457 -21.46715 -20.52986 -20.40496 -18.45020 -18.24356 -17.83210 -17.65881 -16.23313 -15.95831 -15.67541 -15.46970 -15.04530 -14.55391 -14.54994 -14.41268 -14.25739 -14.20156 -13.97320 -13.72814 -13.67235 -13.41682 -13.31622 -12.86461 -12.61709 -12.13680 -11.97293 -11.88225 -11.83079 -11.49722 -11.39652 -11.35061 -11.07517 -10.93063 -10.81221 -10.48245 -10.08005 -9.56952 -8.73885 -8.19648 -7.70201 -7.67434 -6.98443 -4.76527 2.47980 2.61104 2.64935 2.92981 2.96268 3.10156 3.61462 3.64736 3.72951 3.74263 4.08803 4.35747 4.43257 4.51479 4.59765 4.78957 4.88688 5.15240 5.32134 5.37680 5.44946 5.61078 5.68149 5.75345 5.93152 5.98338 6.05110 6.50533 6.54141 6.74684 6.76418 6.97734 6.98565 7.24125 7.57812 7.76213 8.00546 8.30129 8.57800 8.59897 9.52976 9.91295 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.003810 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.534576 B = 7348.281505 C = 8119.071288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.135 3.865 10 C -0.207 4.207 11 C 0.091 3.909 12 N -0.550 5.550 13 C 0.288 3.712 14 N -0.464 5.464 15 C 0.049 3.951 16 C -0.111 4.111 17 C -0.151 4.151 18 C 0.072 3.928 19 F -0.204 7.204 20 C 0.465 3.535 21 F -0.171 7.171 22 F -0.175 7.175 23 F -0.183 7.183 24 C 0.062 3.938 25 C -0.302 4.302 26 H 0.285 0.715 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -8.286 -2.748 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.127 3.873 10 C -0.229 4.229 11 C -0.059 4.059 12 N -0.265 5.265 13 C 0.060 3.940 14 N -0.186 5.186 15 C -0.078 4.078 16 C -0.149 4.149 17 C -0.154 4.154 18 C 0.017 3.983 19 F -0.185 7.185 20 C 0.410 3.590 21 F -0.152 7.152 22 F -0.157 7.157 23 F -0.164 7.164 24 C -0.066 4.066 25 C -0.329 4.329 26 H 0.096 0.904 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.083 -9.334 -2.271 11.370 hybrid contribution 1.340 1.989 -0.491 2.448 sum 7.423 -7.345 -2.762 10.802 Atomic orbital electron populations 1.69760 1.07768 1.29861 1.33274 1.25979 0.94780 1.01654 0.91773 0.86248 0.80656 0.80102 0.79461 1.19260 1.19805 1.18277 1.19593 0.97831 0.90810 1.40330 0.90108 1.17701 0.90471 0.91884 0.87254 1.22038 1.00096 0.98460 1.02276 1.21656 0.98238 0.88009 0.98011 1.66912 1.14403 1.29125 1.16079 1.19028 0.92831 0.86507 0.95660 1.61502 1.17888 1.30289 1.08918 1.23292 1.00174 0.96862 0.87516 1.22662 0.94021 1.01346 0.96829 1.23432 0.99294 0.92324 1.00347 1.22110 0.92856 0.93749 0.89627 1.92821 1.84752 1.77972 1.62955 1.20162 0.75135 0.87821 0.75857 1.93214 1.52501 1.80818 1.88706 1.93211 1.83575 1.79597 1.59292 1.93174 1.68392 1.95235 1.59611 1.22850 0.88559 0.99390 0.95806 1.22020 1.05875 0.94025 1.10958 0.90367 0.85505 0.85829 0.89035 0.92183 0.89087 0.89046 0.88149 0.89141 0.90713 0.89157 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 10.92 55.55 0.61 -18.07 16 2 C 0.08 1.81 5.20 -17.35 -0.09 1.72 16 3 Si 0.91 17.15 29.59 -169.99 -5.03 12.12 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.45 -11.07 9.12 -37.65 -0.34 -11.41 16 8 H 0.08 1.87 7.90 -52.48 -0.41 1.46 16 9 C 0.14 3.35 5.60 -106.55 -0.60 2.75 16 10 C -0.21 -5.05 8.74 -39.07 -0.34 -5.39 16 11 C 0.09 2.12 11.10 -18.04 -0.20 1.92 16 12 N -0.55 -13.04 10.37 -12.82 -0.13 -13.17 16 13 C 0.29 6.30 5.86 -154.97 -0.91 5.39 16 14 N -0.46 -8.43 5.36 -169.30 -0.91 -9.34 16 15 C 0.05 0.74 6.41 -1.89 -0.01 0.73 16 16 C -0.11 -1.36 5.88 -24.86 -0.15 -1.51 16 17 C -0.15 -1.92 0.39 -153.15 -0.06 -1.98 16 18 C 0.07 0.80 5.98 37.15 0.22 1.02 16 19 F -0.20 -2.55 15.27 2.25 0.03 -2.51 16 20 C 0.46 6.12 2.07 37.16 0.08 6.20 16 21 F -0.17 -2.45 16.09 2.25 0.04 -2.41 16 22 F -0.18 -2.34 15.51 2.25 0.03 -2.30 16 23 F -0.18 -2.41 16.55 2.25 0.04 -2.37 16 24 C 0.06 0.94 5.46 -2.76 -0.02 0.93 16 25 C -0.30 -6.77 7.67 -38.44 -0.29 -7.06 16 26 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 27 H 0.13 3.15 6.20 -52.49 -0.33 2.82 16 28 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 0.93 6.77 -51.93 -0.35 0.58 16 31 H 0.09 1.12 7.25 -51.93 -0.38 0.74 16 32 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 35 H 0.07 1.15 6.04 -51.93 -0.31 0.83 16 36 H 0.09 1.41 7.34 -51.93 -0.38 1.02 16 37 H 0.10 1.97 7.05 -52.49 -0.37 1.60 16 LS Contribution 317.17 15.07 4.78 4.78 Total: -1.00 -27.06 317.17 -6.99 -34.05 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.74 Total: 5.93 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.71 Total: -6.70 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.43 Total: -40.58 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 0.14 Total: -9.59 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.06 -6.99 -34.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164265857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.254 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds