Wall clock time and date at job start Tue Mar 31 2020 12:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86794 * 119.99880 * 2 1 4 4 H 1.48506 * 109.47428 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47192 * 30.00386 * 3 2 1 6 6 H 1.48501 * 109.47340 * 150.00054 * 3 2 1 7 7 C 1.40022 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99738 * 163.16312 * 7 2 1 9 9 C 1.41548 * 120.00480 * 343.16057 * 7 2 1 10 10 C 1.41186 * 120.99124 * 336.10888 * 9 7 2 11 11 C 1.36554 * 119.14485 * 180.02562 * 10 9 7 12 12 N 1.32099 * 121.26993 * 359.71803 * 11 10 9 13 13 C 1.32533 * 122.21225 * 0.57580 * 12 11 10 14 14 N 1.39087 * 119.65581 * 179.70377 * 13 12 11 15 15 C 1.48534 * 110.99735 * 119.85162 * 14 13 12 16 16 C 1.54942 * 103.22443 * 159.72319 * 15 14 13 17 17 C 1.54601 * 102.92065 * 322.58593 * 16 15 14 18 18 C 1.52994 * 110.30913 * 263.04362 * 17 16 15 19 19 F 1.39904 * 109.47014 * 295.71609 * 18 17 16 20 20 C 1.53001 * 110.38883 * 140.91519 * 17 16 15 21 21 F 1.39898 * 109.47452 * 304.23525 * 20 17 16 22 22 F 1.39901 * 109.47063 * 64.23926 * 20 17 16 23 23 F 1.39904 * 109.46840 * 184.23560 * 20 17 16 24 24 C 1.47890 * 111.00080 * 237.25123 * 14 13 12 25 25 C 1.38739 * 120.68881 * 359.42631 * 13 12 11 26 26 H 0.97005 * 119.99986 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.42491 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.36532 * 179.97438 * 11 10 9 29 29 H 1.09003 * 110.66692 * 278.15410 * 15 14 13 30 30 H 1.08999 * 110.66571 * 41.28846 * 15 14 13 31 31 H 1.09001 * 110.72391 * 80.94340 * 16 15 14 32 32 H 1.09000 * 110.72564 * 204.22993 * 16 15 14 33 33 H 1.08998 * 109.47597 * 55.71587 * 18 17 16 34 34 H 1.09004 * 109.47031 * 175.72019 * 18 17 16 35 35 H 1.08997 * 109.92215 * 333.50876 * 24 14 13 36 36 H 1.09005 * 109.91951 * 94.80514 * 24 14 13 37 37 H 1.07997 * 120.67007 * 180.25363 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0529 -1.2326 -0.2715 9 6 1.3453 -2.4124 0.3540 10 6 0.1904 -2.3927 1.1659 11 6 -0.4182 -3.5727 1.4853 12 7 0.0499 -4.7268 1.0451 13 6 1.1327 -4.8063 0.2850 14 7 1.5827 -6.0506 -0.1439 15 6 1.5922 -6.1308 -1.6271 16 6 2.5720 -7.2966 -1.9127 17 6 3.6578 -7.1092 -0.8282 18 6 4.8541 -6.3464 -1.4007 19 9 5.4564 -7.1103 -2.4062 20 6 4.1062 -8.4665 -0.2826 21 9 2.9935 -9.1687 0.1928 22 9 4.7192 -9.2001 -1.3040 23 9 5.0159 -8.2716 0.7622 24 6 2.9796 -6.2846 0.2816 25 6 1.8189 -3.6609 -0.0920 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2061 -1.4566 1.5302 28 1 -1.3016 -3.5618 2.1064 29 1 0.5970 -6.3631 -2.0062 30 1 1.9629 -5.2018 -2.0602 31 1 2.0720 -8.2581 -1.7958 32 1 3.0026 -7.2031 -2.9097 33 1 4.5146 -5.3987 -1.8187 34 1 5.5768 -6.1555 -0.6073 35 1 3.4950 -5.3321 0.4040 36 1 2.9940 -6.8409 1.2189 37 1 2.6988 -3.7257 -0.7147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164265857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:13 Heat of formation + Delta-G solvation = -178.437376 kcal Electronic energy + Delta-G solvation = -27567.366893 eV Core-core repulsion = 23036.133497 eV Total energy + Delta-G solvation = -4531.233396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.21815 -48.88143 -48.66537 -48.46451 -41.32904 -39.35385 -36.10720 -34.58215 -32.64688 -31.21581 -29.74236 -27.87856 -27.31816 -26.30881 -24.14222 -23.17356 -22.08136 -21.49694 -19.55394 -19.45556 -19.23038 -18.79474 -17.75262 -17.05374 -16.95214 -16.62979 -16.57549 -16.15998 -15.84338 -15.58880 -15.46715 -15.35279 -15.05358 -14.92708 -14.83206 -14.77598 -14.64700 -14.28650 -14.24575 -13.41356 -13.25336 -13.16400 -13.04832 -12.98269 -12.94740 -12.72177 -12.50680 -12.03197 -11.90055 -11.85054 -11.83266 -11.27335 -10.34745 -10.01767 -9.43858 -9.30995 -8.71231 -6.60579 0.73250 0.92375 1.39515 1.50439 1.55374 1.58025 2.16220 2.53330 2.56438 2.63336 2.73576 2.81537 3.30046 3.43153 3.50735 3.63871 3.88201 3.98671 4.08304 4.20769 4.24058 4.33209 4.51379 4.56833 4.70760 4.76228 4.78369 4.85303 4.92479 4.98558 5.03561 5.19961 5.44291 5.68259 5.81077 5.97457 6.26980 6.51679 6.76189 6.81814 7.75502 8.20508 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.003810 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.534576 B = 7348.281505 C = 8119.071288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.481 4.481 8 H 0.086 0.914 9 C 0.108 3.892 10 C -0.229 4.229 11 C 0.090 3.910 12 N -0.574 5.574 13 C 0.294 3.706 14 N -0.479 5.479 15 C 0.048 3.952 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.072 3.928 19 F -0.209 7.209 20 C 0.466 3.534 21 F -0.179 7.179 22 F -0.174 7.174 23 F -0.182 7.182 24 C 0.064 3.936 25 C -0.306 4.306 26 H 0.293 0.707 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -8.134 -3.551 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.104 0.896 9 C 0.100 3.900 10 C -0.252 4.252 11 C -0.061 4.061 12 N -0.290 5.290 13 C 0.066 3.934 14 N -0.202 5.202 15 C -0.079 4.079 16 C -0.137 4.137 17 C -0.145 4.145 18 C 0.017 3.983 19 F -0.190 7.190 20 C 0.412 3.588 21 F -0.160 7.160 22 F -0.155 7.155 23 F -0.164 7.164 24 C -0.064 4.064 25 C -0.332 4.332 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.441 -9.209 -3.084 12.235 hybrid contribution 0.887 1.857 -0.242 2.072 sum 8.327 -7.353 -3.326 11.596 Atomic orbital electron populations 1.69807 1.09211 1.31256 1.33323 1.26829 0.95456 1.04734 0.90734 0.85157 0.79163 0.75559 0.79661 1.18533 1.19120 1.18030 1.19895 0.98280 0.91649 1.41347 0.89583 1.18104 0.91003 0.93182 0.87748 1.22007 1.01053 0.98438 1.03652 1.21963 0.98652 0.87655 0.97810 1.67012 1.15550 1.29210 1.17195 1.19343 0.91902 0.87867 0.94289 1.61553 1.19724 1.28080 1.10814 1.23338 1.00986 0.97995 0.85564 1.22634 0.93152 1.00136 0.97815 1.23354 0.99941 0.91804 0.99450 1.22212 0.92528 0.93588 0.89976 1.92813 1.84769 1.78207 1.63225 1.20190 0.74939 0.87849 0.75827 1.93202 1.52948 1.81055 1.88833 1.93215 1.83522 1.79594 1.59210 1.93176 1.68344 1.95218 1.59645 1.22787 0.87261 0.99778 0.96547 1.22177 1.06464 0.93483 1.11095 0.89561 0.86619 0.83789 0.89288 0.92349 0.88842 0.86785 0.86998 0.87587 0.90710 0.89722 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.01 10.92 21.84 0.24 -38.77 16 2 C 0.04 1.85 5.20 85.29 0.44 2.30 16 3 Si 0.98 34.44 29.59 68.60 2.03 36.47 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.27 -8.97 7.11 99.48 0.71 -8.27 16 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 7 C -0.48 -23.50 9.12 23.52 0.21 -23.28 16 8 H 0.09 3.96 7.90 -2.91 -0.02 3.94 16 9 C 0.11 5.42 5.60 -21.12 -0.12 5.30 16 10 C -0.23 -11.46 8.74 22.60 0.20 -11.26 16 11 C 0.09 4.21 11.10 84.26 0.94 5.15 16 12 N -0.57 -27.32 10.37 -194.47 -2.02 -29.34 16 13 C 0.29 12.81 5.86 132.90 0.78 13.59 16 14 N -0.48 -17.02 5.36 -689.55 -3.70 -20.72 16 15 C 0.05 1.38 6.41 86.65 0.56 1.94 16 16 C -0.10 -2.23 5.88 31.80 0.19 -2.04 16 17 C -0.14 -3.33 0.39 -51.30 -0.02 -3.35 16 18 C 0.07 1.41 5.98 71.98 0.43 1.84 16 19 F -0.21 -4.64 15.27 44.97 0.69 -3.95 16 20 C 0.47 11.41 2.07 71.98 0.15 11.56 16 21 F -0.18 -4.87 16.09 44.97 0.72 -4.14 16 22 F -0.17 -4.26 15.51 44.97 0.70 -3.56 16 23 F -0.18 -4.49 16.55 44.97 0.74 -3.74 16 24 C 0.06 1.87 5.46 86.45 0.47 2.34 16 25 C -0.31 -13.67 7.67 23.01 0.18 -13.50 16 26 H 0.29 12.68 8.29 -92.70 -0.77 11.91 16 27 H 0.12 5.94 6.20 -2.91 -0.02 5.92 16 28 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.06 1.72 6.77 -2.39 -0.02 1.70 16 31 H 0.09 2.09 7.25 -2.39 -0.02 2.07 16 32 H 0.11 2.09 7.56 -2.39 -0.02 2.07 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 1.78 7.96 -2.38 -0.02 1.76 16 35 H 0.07 2.20 6.04 -2.39 -0.01 2.18 16 36 H 0.08 2.56 7.34 -2.38 -0.02 2.55 16 37 H 0.11 4.55 7.05 -2.91 -0.02 4.53 16 Total: -1.00 -57.51 317.17 4.93 -52.58 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 1.13 Total: 24.61 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.40 Total: -9.43 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -5.48 Total: -88.83 kcal Atomic # 9 Polarization: -18.25 SS G_CDS: 2.85 Total: -15.40 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -57.51 4.93 -52.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164265857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.857 kcal (2) G-P(sol) polarization free energy of solvation -57.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds